bims-skolko Biomed News
on Scholarly communication
Issue of 2024–12–15
thirty-two papers selected by
Thomas Krichel, Open Library Society



  1. Nature. 2024 Dec;636(8042): 512
      
    Keywords:  Publishing; Research data; Technology
    DOI:  https://doi.org/10.1038/d41586-024-03996-w
  2. Curr Med Res Opin. 2024 Dec 13. 1-21
      Biomedical research cannot function without the trust of peers and society. The truthfulness of claims made by knowledge-producing agents, such as authors of research, is a prerequisite for their trustworthiness, and violations of truthfulness are rightly seen as a threat to the existence and validity of such research. While most reflection on the lack of truthfulness has focused on fake research, little attention has been paid to how sting operations and hoaxes arguably pose an equally great risk to the ethical integrity of publishing. This paper posits that sting operations, like fake research, are examples of breaches of truthfulness. We also argue that for both fake research, as well as stings and hoaxes, the lack of respect for the ethical criterion of truthfulness makes those researchers who engage in them untrustworthy. Sting operations are akin to fighting fire with fire, further undermining trust in biomedical research. From a deontological perspective, we also argue that the reliance on anonymity in sting operations makes them just as bad, if not worse, than fake research. We advocate for critical scholarship as an alternative to hoaxes and sting operations to expose fake research, in order to promote truthfulness rather than violate it. Finally, we argue that journalists reporting on sting operations should insist less on their entertainment and sensationalist value, and focus more on their unethical nature.
    Keywords:  biomedical research; deontology; editorial screening and standards; ethics; fake; hoax; morality; science journalism; transparency; trustworthiness; truthfulness
    DOI:  https://doi.org/10.1080/03007995.2024.2441340
  3. Nature. 2024 Dec;636(8043): 548-549
      
    Keywords:  Ethics; Publishing; Scientific community
    DOI:  https://doi.org/10.1038/d41586-024-03894-1
  4. Nature. 2024 Dec 11.
      
    Keywords:  Authorship; Publishing; Scientific community
    DOI:  https://doi.org/10.1038/d41586-024-03953-7
  5. Plast Surg (Oakv). 2024 Dec 09. 22925503241300336
      Introduction: As scientific publishing has transitioned online, open access and predatory publishers have surged. This study describes the frequency of publications in potentially predatory and open access journals among applicants to a Canadian plastic surgery residency program, and explores applicant characteristics associated with open access and predatory publishing. Methods: A retrospective review of plastic surgery resident applicants' curriculum vitae (CVs) from 2015 to 2018 was performed. Published articles listed in CVs were reviewed by 2 authors to identify publication availability, publication year, and publisher. Open access publications were identified using the Directory of Open Access Journals. Predatory publications were identified using Beall's list of potentially predatory publishers. Published applicants' characteristics were summarized. Applicant characteristics associated with open access and predatory publishing were explored using logistic regression. Results: Of the 186 applicants, 117 published 388 articles and were included in the final analysis. 156 (40.2%) articles were published in open access journals by 76 (40.8%) applicants. 14 (3.6%) articles were published in predatory journals by 14 (7.5%) applicants. Applicant characteristics associated with open access publishing included total number of publications (OR: 1.56, 1.18-1.93, P < .001) and presence of at least one post-baccalaureate degree (OR: 0.36, 0.13-0.95, P = .038). Only an applicant's total number of publications (OR: 1.25, 1.06-1.48, P = .010) was significantly associated with publishing in a predatory journal. Conclusion: These findings stress the importance of raising awareness within the plastic surgery community, including medical students, about the deceptive nature of predatory journals.
    Keywords:  medical student; open-access journal; plastic surgery; predatory journals; research integrity
    DOI:  https://doi.org/10.1177/22925503241300336
  6. J Pediatr Pharmacol Ther. 2024 Dec;29(6): 674-675
      
    Keywords:  expert reviewer; journals; peer review; publishing
    DOI:  https://doi.org/10.5863/1551-6776-29.6.674
  7. Account Res. 2024 Dec 13. 1-25
      Background: We consider a research model for manuscript evaluation using a two-stage process. In the first stage, the current submission reminds reviewers of previous reviewing experiences, and then, reviewers aggregate these past review experiences into a kind of norm for assessing the scientific contribution and clarity of writing required for a manuscript. In the second stage, the reviewer's norms are imposed on the manuscript under review, and the reviewer's attention is drawn to discrepancies between the norm retrieved from previous similar peer review experiences and the reality for this submission.Methods: Five research hypotheses were integrated into this research model. In our study, we tested these five research hypotheses for statistical differences among reviewers by gender, experience, and academic rank using an online survey. There were 573 respondents.Results: We did not find significant differences among reviewers in their basic behavioral patterns. The only exception was that the low-rank reviewers agreed with the first hypothesis "H1: Selective norm" to a greater extent than the high-rank reviewers.Conclusions: The interaction between a reviewer's past review experiences and the actual scientific contribution and writing clarity of the manuscript under review can explain the lack of consistency among different reviews for the same manuscript.
    Keywords:  Manuscript evaluation; academic rank; disciplinary variations; gender; review experience
    DOI:  https://doi.org/10.1080/08989621.2024.2440098
  8. Malays Fam Physician. 2024 ;19 65
      
    Keywords:  Research; Scientific committee; Scientific conference; Scientific poster
    DOI:  https://doi.org/10.51866/mol.711
  9. J Pediatr Pharmacol Ther. 2024 Dec;29(6): 570-577
      Peer review is an essential step in the publication process and dissemination for scientific information to improve patient care and future research in pediatric patients. It is a professional obligation to ensure high quality, reliable, and relevant information is published. Despite this, many journals face problems finding peer reviewers. Several journals and organizations have developed resources to aid in the training of peer reviewers. The purpose of this primer is to provide an overview of the steps of peer review and to emphasize key points on how to conduct a peer review.
    Keywords:  editor; manuscript review; pediatric; peer review; pharmacy; publishing peer review
    DOI:  https://doi.org/10.5863/1551-6776-29.6.570
  10. BJGP Open. 2024 Dec 10. pii: BJGPO.2024.0285. [Epub ahead of print]
      
    Keywords:  editorial; general practice; peer review; primary healthcare
    DOI:  https://doi.org/10.3399/BJGPO.2024.0285
  11. Account Res. 2024 Dec 10. 1-2
      
    Keywords:  AI co-authorship; academic integrity ; responsible AI integration
    DOI:  https://doi.org/10.1080/08989621.2024.2439443
  12. J Med Internet Res. 2024 Dec 09. 26 e57667
       BACKGROUND: In the realm of scientific research, peer review serves as a cornerstone for ensuring the quality and integrity of scholarly papers. Recent trends in promoting transparency and accountability has led some journals to publish peer-review reports alongside papers.
    OBJECTIVE: ChatGPT-4 (OpenAI) was used to quantitatively assess sentiment and politeness in peer-review reports from high-impact medical journals. The objective was to explore gender and geographical disparities to enhance inclusivity within the peer-review process.
    METHODS: All 9 general medical journals with an impact factor >2 that publish peer-review reports were identified. A total of 12 research papers per journal were randomly selected, all published in 2023. The names of the first and last authors along with the first author's country of affiliation were collected, and the gender of both the first and last authors was determined. For each review, ChatGPT-4 was asked to evaluate the "sentiment score," ranging from -100 (negative) to 0 (neutral) to +100 (positive), and the "politeness score," ranging from -100 (rude) to 0 (neutral) to +100 (polite). The measurements were repeated 5 times and the minimum and maximum values were removed. The mean sentiment and politeness scores for each review were computed and then summarized using the median and interquartile range. Statistical analyses included Wilcoxon rank-sum tests, Kruskal-Wallis rank tests, and negative binomial regressions.
    RESULTS: Analysis of 291 peer-review reports corresponding to 108 papers unveiled notable regional disparities. Papers from the Middle East, Latin America, or Africa exhibited lower sentiment and politeness scores compared to those from North America, Europe, or Pacific and Asia (sentiment scores: 27 vs 60 and 62 respectively; politeness scores: 43.5 vs 67 and 65 respectively, adjusted P=.02). No significant differences based on authors' gender were observed (all P>.05).
    CONCLUSIONS: Notable regional disparities were found, with papers from the Middle East, Latin America, and Africa demonstrating significantly lower scores, while no discernible differences were observed based on authors' gender. The absence of gender-based differences suggests that gender biases may not manifest as prominently as other forms of bias within the context of peer review. The study underscores the need for targeted interventions to address regional disparities in peer review and advocates for ongoing efforts to promote equity and inclusivity in scholarly communication.
    Keywords:  Africa; ChatGPT; artificial intelligence; assessment; communication; consultation; discrimination; disparity; gender; gender bias; geographic; global south; inequality; peer review; researcher; sentiment analysis; woman
    DOI:  https://doi.org/10.2196/57667
  13. J Yeungnam Med Sci. 2024 Dec 11.
       Background: Large language models (LLMs), the most recent advancements in artificial intelligence (AI), have profoundly affected academic publishing and raised important ethical and practical concerns. This study examined the prevalence and content of AI guidelines in Korean medical journals to assess the current landscape and inform future policy implementation.
    Methods: The top 100 Korean medical journals determined by Hirsh index were surveyed. Author guidelines were collected and screened by a human researcher and AI chatbot to identify AI-related content. The key components of LLM policies were extracted and compared across journals. The journal characteristics associated with the adoption of AI guidelines were also analyzed.
    Results: Only 18% of the surveyed journals had LLM guidelines, which is much lower than previously reported in international journals. However, the adoption rates increased over time, reaching 57.1% in the first quarter of 2024. High-impact journals were more likely to have AI guidelines. All journals with LLM guidelines required authors to declare LLM tool use and 94.4% prohibited AI authorship. The key policy components included emphasizing human responsibility (72.2%), discouraging AI-generated content (44.4%), and exempting basic AI tools (38.9%).
    Conclusion: While the adoption of LLM guidelines among Korean medical journals is lower than the global trend, there has been a clear increase in implementation over time. The key components of these guidelines align with international standards, but greater standardization and collaboration are needed to ensure the responsible and ethical use of LLMs in medical research and writing.
    Keywords:  Artificial intelligence; Medical writing; Research ethics; Scholarly communication; Scientific misconduct
    DOI:  https://doi.org/10.12701/jyms.2024.00794
  14. Ann Med Surg (Lond). 2024 Dec;86(12): 6976-6982
       Introduction and importance: The progression in research and studies made by each nation's scientific communities serves as one of the primary metrics for evaluating that nation's scientific development; in this study of medical students at Palestinian medical colleges, attention was given to individuals who had been involved in research activities during their undergraduate training.
    Materials and methods: The authors conducted an online survey among medical students in Palestinian medical institutions, focusing on those engaged in research processes throughout their undergraduate studies. The study started in March 2022 and ended in the final week of May 2022. Participants were instructed to respond to statements regarding research work in the online self-administered questionnaire.
    Results: In the authors' study, out of 425 participants, only 4.9% published an article. There were no significant gender disparities between males and females who published at least one article. There was a strong association between the year of study and publishing, with clinical students being more likely to publish (90.4%) than preclinical students (8.6%). The authors' study revealed that students published either to enhance their curriculum vitae (33.0%) or out of personal interest (19.0%).
    Conclusion: While participants in the authors' study demonstrate high levels of awareness and favorable attitudes toward research, active participation in the research community is still insufficient. More opportunity and mentorship are among the stated obstacles to participation in research. To overcome these obstacles, the authors suggest making long-term investments in research training, starting research clubs, and offering coaching and mentorship.
    Keywords:  Palestine; barriers to publishing; medical schools; medical students; publication practices
    DOI:  https://doi.org/10.1097/MS9.0000000000002372
  15. J Endod. 2024 Dec 04. pii: S0099-2399(24)00620-4. [Epub ahead of print]
       INTRODUCTION: Prospective registration of randomized clinical trials (RCTs) is highly recommended to ensure research transparency and prevent selective outcome reporting (SOR). This study aimed to evaluate the adherence to registration and the presence of SOR in RCTs published in endodontic journals over the past five years.
    METHODS: Electronic searches were conducted in PubMed and the libraries of the Journal of Endodontics, International Endodontic Journal, European Endodontic Journal, and Australian Endodontic Journal. Two reviewers were involved in the study selection and evaluation. Publications were assessed for key methodological aspects, including the presence and timing of trial registration. RCT registries were examined to identify discrepancies between publication and registered protocols and the presence of SOR. Logistic regression was used to explore the effect of study variables on registration practices and SOR.
    RESULTS: Of the 144 RCTs included, 104 (72.2%) were registered. Among those registered, only 19 (18.3%) adhered to prospective registration. Registration practice increased by 53% per year (OR 1.53; 95%CI:1.34-2.08; p<.01). Discrepancies between publication and protocol were identified in 55.8% of studies, primarily related to sample size (33.7%). SOR was identified in 41 trials (39.4%), mainly due to discrepancies in the outcome time frame (18.3%). Studies evaluating multiple outcomes had 4.95 times higher odds of exhibiting SOR (OR 4.95; 95%CI 1.63-12.95; p<.01). Furthermore, studies that were registered retrospectively or exhibited discrepancies between publication and protocol accounted for 6.10 times (OR 6.10; 95%CI 1.81-18.96; p=.03) and 5.61 times (OR 5.61; 95%CI 2.93-16.58; p<.01) higher odds of exhibiting SOR, respectively.
    CONCLUSIONS: RCTs published in endodontic journals over the past five years presented low adherence to prospective trial registration and a high prevalence of SOR.
    Keywords:  Endodontics; Randomized controlled trial; Selective outcome reporting; Trial registration
    DOI:  https://doi.org/10.1016/j.joen.2024.12.001
  16. Nature. 2024 Dec;636(8042): S18
      
    Keywords:  Materials science; Publishing; Research data; Research management; Scientific community
    DOI:  https://doi.org/10.1038/d41586-024-04004-x
  17. J Prof Nurs. 2024 Nov-Dec;55:pii: S8755-7223(24)00153-4. [Epub ahead of print]55 70-72
      Satisfactory scholarly writing is identified as a barrier to successful completion for students enrolled in graduate nursing programs. In this semester-long activity, students work collaboratively to develop and apply strategies including PICO(T) question development, appraisal of primary and secondary literature, and literature matrix development to enhance their professional writing. Students' demonstration of inquiry and scholarly writing improved throughout the semester. This innovative teaching approach to fostering scholarly writing development is an effective way to prepare students for dissemination.
    Keywords:  DNP; Dissemination; Doctor of nursing practice; Graduate; Literature review; Scaffolding; Scholarly writing; Writing
    DOI:  https://doi.org/10.1016/j.profnurs.2024.09.004
  18. Int J Obstet Anesth. 2024 Dec 05. pii: S0959-289X(24)00321-2. [Epub ahead of print] 104309
      
    Keywords:  Application; Artificial intelligence; ChatGPT; Residency; Writing
    DOI:  https://doi.org/10.1016/j.ijoa.2024.104309
  19. J Neurol. 2024 Dec 12. 272(1): 20
    “Digital Neurology, Artificial Intelligence” Study Group of the Italian Society of Neurology (SIN), in collaboration with the Italian Section of young Neurologists (SIgN)
       BACKGROUND AND OBJECTIVES: Editors of scientific journals play a key role in the health-related research process. Our study aims to characterize the demographics, work habits, decision-making processes, and ethical challenges faced by editors of neurological journals and to evaluate associations between editor or journal characteristics and editorial decisions, as well as sources of conflict of interest.
    METHODS: Cross-sectional study involving editors from neurological journals that fell above the 50th percentile in the Scimago rankings. Editors were invited to complete a 16-item anonymous online survey. Data on demographics, editorial processes, decision-making, and ethical issues were collected and analysed.
    RESULTS: 64 editors completed the survey (35.94% were aged 55-65 years, 68.75% had over 7 years of experience); journals' impact factors(IF) ranged from 1 to 10 (mean 3.412 ± 0.260). When reviewers were blinded to authors, editors relied more on reviewers' decisions (p = < 0.007). Editors with more years of experience relied less on reviewers' decisions (p = 0.009). Higher IF journals were associated with more frequent conflicts of interest between authors (p = 0.019) and reviewers (p = 0.033). Younger editors faced more ethical dilemmas related to scientific conduct and plagiarism (p = 0.008 and p = 0.016). Younger editors and those working for journals with higher IF were more likely to face ethical dilemmas related to editorial decisions (p = 0.016 and p = 0.042).
    DISCUSSION: The study highlights relevant aspects of the editorial process in neurological journals, emphasizing the influence of blinding procedures and the inconsistent handling of decision-making and ethical challenges. Addressing these issues through collaboration and standardized guidelines can promote the integrity of the process, ensuring high-quality and trustworthy scientific research.
    Keywords:  Conflict of interest; Editor; Editorial process; Ethics; Neurology
    DOI:  https://doi.org/10.1007/s00415-024-12780-9
  20. Lancet Psychiatry. 2024 Dec 10. pii: S2215-0366(24)00397-3. [Epub ahead of print]
      
    DOI:  https://doi.org/10.1016/S2215-0366(24)00397-3
  21. Food Chem Toxicol. 2024 Dec 10. pii: S0278-6915(24)00765-8. [Epub ahead of print] 115199
      
    DOI:  https://doi.org/10.1016/j.fct.2024.115199
  22. Eur J Radiol. 2024 Nov 28. pii: S0720-048X(24)00578-3. [Epub ahead of print]183 111862
      
    Keywords:  RadioComic; Radiology; Science; Social Media
    DOI:  https://doi.org/10.1016/j.ejrad.2024.111862
  23. Eur J Prosthodont Restor Dent. 2024 Nov 29. 32(4): 365
      I would like to greet you all as the incoming Editor-in-Chief of the European Journal of Prosthodontics and Restorative Dentistry (EJPRD) which has a history of over 60 years. Back in 1965, the journal was initially named 'Journal (Anglo-Continental Dental Society)' which was published semi-annually by the same society. In 1984, A.E. Morgan Publications started publishing the journal as 'Restorative Dentistry' associated with the British Society for Restorative Dentistry (inaugurated 1968). In 1992, the journal was renamed as "European Journal of Prosthodontics and Restorative Dentistry" and became a new peer-reviewed medical journal under the leadership of the founding Editorin- Chief, Prof. Paul S. Wright, published by Mosby-Year Book Europe Ltd., which was already then abstracted and indexed in MEDLINE/Pubmed. In 2012, and until now, the publisher became Stephen Hancocks Ltd. in association with Dennis Barber Ltd. Later in 2021, Editor-in chief, Prof. Will Palin, who served between 2015-2024, together with the publisher Dennis Barber Ltd., took the journal online and also helped the journal gain an impact factor.
    DOI:  https://doi.org/10.1922/EJPRD_Dec24Editorial01
  24. Toxicol Pathol. 2024 Dec 12. 1926233241303909
      
    Keywords:  benefits; digital pathology; peer review; primary read
    DOI:  https://doi.org/10.1177/01926233241303909