bims-skolko Biomed News
on Scholarly communication
Issue of 2025–11–02
23 papers selected by
Thomas Krichel, Open Library Society



  1. Science. 2025 Oct 30. 390(6772): 434
      Organizers aim to tune algorithms to reduce peer-review burdens and accelerate science.
    DOI:  https://doi.org/10.1126/science.aed4591
  2. J Biosci. 2025 ;pii: 81. [Epub ahead of print]50
      'Tortured phrases' (TPs) are a linguistic misrepresentation of established jargon or technical terms, and can thus be considered to be factual errors. By synonymizing jargon, TPs reduce the clarity of the scientific message. Given their unique nature, a growing literature on TPs is emerging, a summary of which is provided in this article. Supplementing this growing body of evidence, a curiously unique dataset is presented, namely, of 'sodium hypocrite', which is meant to represent sodium hypochlorite. Examples of TPs in the biological sciences are introduced. Papers that contain 'tortured phrases' should ideally be corrected to accurately represent the correct scientific terms they are currently misrepresenting. This responsibility falls on the shoulders of authors, editors and publishers.
  3. J Occup Environ Hyg. 2025 Oct 31. 1-9
      This article describes how Hermann J. Muller attempted to persuade the editor of the journal Science to obtain a review of his book on eugenics entitled: Out of the Night: A Biologist's View of the Future. Muller sent the editor of Science, James McKeen Cattell, a letter soliciting a review of his forthcoming eugenics book. Muller's letter is of historical significance for several reasons. It highlights how Muller characterized his own standing on the issue with respect to his geneticist colleagues, especially those in the United States. Of even greater importance is the striking lack of transparency that Muller employed in attempting to persuade the editor, not only to publish a review of his book, but also to select the reviewer(s) from a list of suggested geneticists/biologists he provided. The Muller letter is significant since it shows that Muller was deceptive in his communication with the editor. He failed to disclose his personal and professional relationships with each of the six proposed reviewers and their long histories of support and advocacy for eugenics-based societal policies. The present example of Muller's ethical improbity adds to a substantial listing of similar actions that are linked both to his propensity for inappropriate self-promotion and ideological advocacy as seen in activities dealing with eugenics, chemical and radiological risk assessment, hereditary and cancer risk assessment, health physics practices, and the development of secondary school biological curriculum. The current paper gives a rare glimpse into ethics and bias in the scientific community and raises a series of new challenges to the culture of science and its dependence on honesty and transparency. While Muller may be appreciated as a scientist of great talent and achievement, he also displayed personal failings that undercut the integrity of scientific research.
    Keywords:  Eugenics; history of science; mutation; peer review; precautionary principle; research ethics
    DOI:  https://doi.org/10.1080/15459624.2025.2569373
  4. PLoS Biol. 2025 Oct;23(10): e3003438
      Scientific progress relies on science's capacity for self-correction. If erroneous articles remain unchallenged in the publication record, they can mislead future research and undermine evidence-based decision-making. All articles included in a systematic review of animal studies on early brain injury after subarachnoid hemorrhage were analyzed for image-related issues. We included 608 articles, of which 243 articles were identified as problematic (40.0%). Of the 243 problematic articles, 55 (22.6%) have been corrected, 7 (2.9%) have received an expression of concern, 5 (2.1%) were marked with the Taylor & Francis under investigation pop-up, and 19 (7.8%) were retracted. In 9 of the 55 corrected articles (16.4%), new problems were found after correction or not all issues were resolved in the correction. Most (n = 213, 87.7%) problematic articles had a corresponding author affiliated to an institute from China. Our results show that the self-correcting mechanisms in science have stalled in this field of research. Our findings provide insight in the prevalence of image-related issues and can help publishers to take appropriate action. We can only uphold science's capacity for self-correction when problematic articles are actively identified by peers, and when publishers take swift and adequate action to repair the scientific record.
    DOI:  https://doi.org/10.1371/journal.pbio.3003438
  5. Radiologie (Heidelb). 2025 Oct 29.
       OBJECTIVE: We conducted a comprehensive analysis to address the limited knowledge regarding retracted articles in the field of radiology, nuclear medicine, and medical imaging within the Web of Science (WoS) database.
    MATERIALS AND METHODS: The category "Radiology, Nuclear Medicine, and Medical Imaging" was selected in the WoS search interface without specifying a time range and with document types limited to "retraction, retracted publication, withdrawn publication." A total of 113 retracted articles were retrieved and analytically categorized into subgroups for examination. Two independent researchers evaluated the reasons for retraction.
    RESULTS: Of the 113 articles identified as retracted, 106 were included in the study. The median publication duration prior to retraction was 183 days (range: 1-16,406 days). The highest retraction rate by country was found in China (55.66%), and by journal category, in the Science Citation Index (SCI) and SCI-Expanded (86.79%). The primary reasons for retraction were concerns and errors related to the data (37 articles), plagiarism (33 articles), and ethical issues (13 articles). In terms of sources, 66 retractions were initiated by the publisher/editor, 25 by the author, and 13 jointly by the author and editor.
    CONCLUSION: The findings of our study emphasize the need for increased transparency, ethical oversight, and data accuracy in academic publishing. Implementing such measures is essential to safeguarding the credibility and validity of scientific research and ensuring more reliable progress in the academic community moving forward.
    Keywords:  Bibliometric indicators; Publication ethics; Research integrity; Retraction analysis; Scientific publishing
    DOI:  https://doi.org/10.1007/s00117-025-01523-0
  6. Clin Dermatol. 2025 Oct 29. pii: S0738-081X(25)00287-1. [Epub ahead of print]
      We have analyzed dermatology retraction trends (2006-2024) by examining causes, geographic distribution, journal metrics, and citation patterns. Our purpose was to identify systemic issues and propose solutions to enhance research integrity and mitigate post-retraction citation risks in the field. A bibliometric analysis was conducted on 280 retracted dermatology contributions from the Retraction Database (2006-2024), supplemented by Scopus for publication and citation data. The annual number of retractions showed a highly significant increase over the period, peaking at 74 in 2023. Academic misconduct (data fabrication/tampering and plagiarism) was the leading cause, accounting for 45% of all retractions. While the USA had the highest absolute count (n=80), China exhibited the highest normalized retraction rate (357 per 10,000 publications), contrasting sharply with the USA rate (19.7 per 10,000). Post-retraction citation analysis (n=80 contributions) revealed a high rate of inappropriate citations (30%). The sharply increasing retraction trend, driven largely by misconduct and geographic disparities, requires urgent, multi-level interventions, including stricter oversight, ethical training, and improved peer review. Addressing post-retraction citations is critical to curbing misinformation.
    Keywords:  Bibliometric; Citations; Dermatology; Literature; Retractions
    DOI:  https://doi.org/10.1016/j.clindermatol.2025.10.008
  7. Health Aff Sch. 2025 Oct;3(10): qxaf191
      The National Institutes of Health (NIH) recently released a document titled "Leading in Gold Standard Science-An NIH Implementation Plan." We offer reflections on 4 of the 9 "tenets" of gold standard research and recommendations for improving scholarly publication.
    Keywords:  ethics; research integrity; scientific integrity
    DOI:  https://doi.org/10.1093/haschl/qxaf191
  8. Sci Eng Ethics. 2025 Oct 29. 31(6): 32
      
    Keywords:  AI ethics; Business ethics; Ethical agency; Ethics codes; Ethics guidelines; Moral agency; Writing ethics codes
    DOI:  https://doi.org/10.1007/s11948-025-00559-8
  9. Res Integr Peer Rev. 2025 Oct 27. 10(1): 23
       BACKGROUND: Gender and geographical disparities have been widely reported in the peer-review process of biomedical journals. Artificial Intelligence (AI) is increasingly transforming the publishing system; however, its potential to identify suitable reviewers, and whether it might reduce, replicate or reinforce existing biases in peer review has never been comprehensively investigated. This study sought to determine the usefulness of AI in identifying expert scientists in medicine taking into consideration gender and geographical diversity, equity and inclusion (DEI).
    METHODS: The title and abstract of 50 research articles published in high-impact biomedical journals between November 2023 and September 2024 were fed into a large language model software (GPT-4o), which was prompted to identify 20 distinguished scientists in the study's field. Two trials were randomly performed with and without a gender and geographical DEI prompt. Scientists were classified based on gender, geographical location, and country of affiliation income level. Furthermore, the number of peer-reviewed publications, Google Scholar-derived total citations and h-index were computed.
    RESULTS: Without a DEI prompt, GPT-4o primarily identified male scientists (68%) and those affiliated to high-income countries (95.3%). Conversely, when DEI was explicitly prompted, GPT-4o generated a gender-balanced (51% females) and geographically diverse list of scientists. Specifically, the proportion of scientists from high-income countries decreased to 42.3%, while representation from upper-middle (3.2% to 26.2%), lower-middle (1.2% to 26.1%), and low-income (0.2% to 5.4%) countries significantly increased. The number of publications (without vs. with DEI: 284 ± 237 vs. 281 ± 245, P = 0.77), citations (48,445 ± 60,270 vs. 53,792 ± 71,903, P = 0.13), and h-index (79 ± 43 vs. 76 ± 43, P = 0.15) did not differ between groups.
    CONCLUSIONS: When not prompted to consider DEI, GPT-4o successfully identified expert scientists, but primarily males and those from high-income countries. However, when DEI was explicitly prompted, GPT-4o generated a gender-balanced and geographically diverse list of scientists. The academic productivity was considerably high and comparable between groups, suggesting that GPT-4o identified potentially skilled scientists who could reasonably serve as reviewers for scientific journals. These findings provide evidence that AI can be an ally in combating gender and geographical gaps in peer review, though DEI should be explicitly prompted. Conversely, AI could perpetuate existing biases if not carefully managed.
    Keywords:  AI in medicine; ChatGPT; Diversity; Equity; Gender disparities; Geographical disparities; Inclusion; Scientific review
    DOI:  https://doi.org/10.1186/s41073-025-00182-y
  10. Turk J Ophthalmol. 2025 Oct 27. 55(5): 237-238
      
    Keywords:  Agentic artificial intelligence; artificial general intelligence; artificial narrow intelligence; peer review; scientific publishing
    DOI:  https://doi.org/10.4274/tjo.galenos.2025.46080
  11. Eur J Cardiothorac Surg. 2025 Oct 28. pii: ezaf375. [Epub ahead of print]
       OBJECTIVES: Peer review remains central to scientific publishing; yet, its reliability and true influence on scientific visibility remain debated, especially within subspecialized fields such as thoracic oncology. We aimed to evaluate reviewer agreement in manuscripts submitted to the European Journal of Cardio-Thoracic Surgery (EJCTS) and to examine whether review intensity predicts bibliometric outcomes.
    METHODS: A retrospective analysis of 144 thoracic oncology manuscripts submitted in 2021 was conducted. Each was assessed by 2-4 blinded reviewers. Reviewer recommendations were coded ordinally. Agreement was quantified using Fleiss' Kappa, Cohen's Kappa, and Krippendorff's Alpha, while reviewer heterogeneity was assessed through entropy metrics. Citation and download counts were modeled using negative binomial regression adjusted for manuscript type and time to publication.
    RESULTS: Reviewer concordance was low (Fleiss' Kappa = -0.03; Krippendorff's Alpha = 0.041), with complete agreement observed in only 9.5% of manuscripts. Increasing the number of reviewers was associated with greater disagreement. Nevertheless, both higher reviewer count (Inter-Rater Reliability [IRR] = 1.16; p = 0.004) and additional review rounds (IRR = 1.21; p < 0.001) independently predicted increased citation counts. Longer editorial timelines were associated with slightly reduced downloads (-0.9% per week; p = 0.048).
    CONCLUSIONS: Reviewer consensus is uncommon in thoracic oncology submissions. However, greater reviewer engagement-both in number and iteration-was independently associated with improved bibliometric impact. These findings suggest that structured diversity of reviewer perspectives may enrich peer review and enhance scholarly dissemination, provided that editorial efficiency is preserved. This supports the view that disagreement among reviewers, when properly managed, may act as a catalyst rather than a constraint in scientific dissemination.
    Keywords:  Bibliometric Analysis; Editorial Process; Inter-Rater Reliability; Lung Cancer; Peer Review; Reviewer Agreement; Scholarly Dissemination
    DOI:  https://doi.org/10.1093/ejcts/ezaf375
  12. Front Public Health. 2025 ;13 1621979
      
    Keywords:  LMICs; authorship; bioethics; decolonization; epistemic justice; equity; global health; publication ethics
    DOI:  https://doi.org/10.3389/fpubh.2025.1621979
  13. Knee Surg Sports Traumatol Arthrosc. 2025 Oct 28.
      Orthopaedic congresses and journals are dominated by positive results, creating the impression that modern surgical techniques yield uniformly excellent outcomes. In reality, complications, suboptimal results, and abandoned techniques remain underreported-a reflection of outcome reporting bias (ORB) and publication bias. Professional incentives, reputational concerns, and competitive pressures favour success stories while discouraging the publication of negative findings. Yet, these data are crucial for scientific progress and patient care, offering lessons that help avoid repeated mistakes. This editorial calls on authors, reviewers and editors to actively promote transparency and give equal opportunity to rigorously conducted studies with poor or negative outcomes. Key measures include prospective trial registration, adherence to preregistered protocols, and use of tools such as ROB, ROBINS-I, ORBIT and funnel plots to detect and mitigate bias. True progress in orthopaedic surgery requires an honest, balanced narrative-one that values both success and failure. Only by addressing ORB and publication bias can we restore trust in the scientific record and fulfil our ethical obligation to patients.
    Keywords:  negative results; orthopaedic surgery; outcome reporting bias; publication bias; research transparency
    DOI:  https://doi.org/10.1002/ksa.70164
  14. R Soc Open Sci. 2025 Oct;12(10): 250826
      Open science (OS) practices-such as data sharing, study preregistration and transparent methods-aim to increase transparency of research. While OS practices are gaining popularity-particularly through bottom-up initiatives-their adoption rate among early career researchers remains unclear. To investigate this, we analysed dissertations from two German-speaking psychology departments with varying degree of OS implementation from 2018 to 2022. We manually coded n = 379 studies from k = 91 theses and surveyed former PhD students about perceived norms, attitudes and perceived behavioural control regarding OS practices. Our findings revealed a modest increase of OS over time but no significant difference between departments with more or less-established OS practices. Additionally, attitudes and perceived control appeared to affect OS use more than perceived norms of PhD students' surroundings. As more than a decade has passed since the replication crisis emerged, this highlights a need to intensify measures at universities to implement OS.
    Keywords:  behaviour change; early career researchers; meta science; open data; open science practices; preregistration; research ethics
    DOI:  https://doi.org/10.1098/rsos.250826
  15. Personal Disord. 2025 Oct 27.
      From 2010 to 2014, a series of events and publications revealed that much of the psychological literature was less robust than the field believed. Researchers have highlighted various issues underlying fragile findings in large swaths of psychological science. In response, the field has also proposed solutions to help build a more robust literature. Foremost among these solutions are a suite of Open Science practices, including preregistration, registered reports, and the posting of materials, data, and analytic scripts. While these solutions have primarily emerged outside of clinical science, there is some evidence that clinical science is beginning to adopt Open Science practices. The present study focuses on the use of Open Science practices in personality disorder research, specifically. We discuss the relevance of these practices to personality disorder research, and examine rates of Open Science practices in articles published between 2021 and 2023 in two personality disorder journals, Journal of Personality Disorders (article N = 150) and Personality Disorders: Theory, Research, and Treatment (article N = 158). The rate of Open Science practices in these articles was compared to empirical articles from a select number of general personality journals published during the same time period (article N range = 125-247). Overall, the personality disorder articles showed lower rates of Open Science practices compared to the general personality articles, while some practices (registered reports) were consistently low across all articles. In light of these findings, we discuss ways that personality disorder researchers can effectively implement Open Science practices to help facilitate a more transparent research literature. (PsycInfo Database Record (c) 2025 APA, all rights reserved).
    DOI:  https://doi.org/10.1037/per0000752
  16. Sch Psychol. 2025 Oct 30.
      There have been numerous calls within school psychology and related fields to evaluate the demographic representation of their institutions and initiatives. Currently, little is known about the demographic composition of the editorial boards supporting school psychology journals. Three studies were completed during 2023 and 2024 to address demographic representation across seven school psychology journals. Study 1 analyzed the names of 636 editorial board members to estimate the representation of scholars of color, women, and gender-diverse scholars. Study 2 surveyed board members to estimate representation of scholars of color, women, gender-diverse scholars, sexual minority scholars, scholars with disabilities, and multilingual scholars. Study 3 surveyed journal editors about the composition of their editorial boards. Across studies and journals, results revealed that women composed 56%-61%, scholars of color composed 24%-29%, scholars with disabilities composed 23%, multilingual scholars composed 16%, sexual minority scholars composed 11%, and gender-diverse scholars composed 0.2%-0.4% of editorial board members. One third of board members had two or more intersecting marginalized identities, including 14%-17% who were women of color. Variation in marginalized scholars' representation underscores the need to continue to prioritize and support marginalized board members through advocacy and integration of feedback from its members. (PsycInfo Database Record (c) 2025 APA, all rights reserved).
    DOI:  https://doi.org/10.1037/spq0000716
  17. Ann Thorac Surg Short Rep. 2025 Sep;3(3): 814-817
       Background: Disseminating knowledge through publication of scholarly activity has been a cornerstone of medicine. The shared knowledge provides benefit to our patients and advances the field. The process of writing one's first manuscript may be intimidating. This review provides advice for novice writers to successfully publish their work.
    Methods: A methodologic process to begin writing a manuscript is detailed, including topic selection, formulating a research question, review of the literature, and study design and methodology.
    Results: Ten simple steps to writing a manuscript, ethical considerations, and insight into the review process are provided.
    Conclusions: Encouragement for beginners and simplification of what seems as a daunting task are provided.
    DOI:  https://doi.org/10.1016/j.atssr.2025.03.013
  18. J Empir Res Hum Res Ethics. 2025 Oct 31. 15562646251392340
      BackgroundAcademic medicine often struggles to balance leadership duties with maintaining research productivity. The impact of holding a position of power on authorship practices in a hierarchical environment remains underexplored. We addressed this gap by examining how leadership roles influence publication and collaboration patterns in Lithuanian medical academia.MethodsWe performed a bibliometric analysis of ten-year publication records for 633 Lithuanian medical researchers in formal leadership positions (department heads, center directors, and similar formal roles), comparing their output and authorship patterns to those of peers without such roles. Publication data were collected from PubMed and a national academic library, capturing total publications, author order (first/middle/last author positions), and co-authorship counts. We used statistical tests to compare groups and applied the Gini coefficient to assess inequality in research output.ResultsLeaders showed distinct authorship roles and collaboration patterns. Compared to equally productive non-leaders, leaders had significantly fewer first-authored papers (10.79% vs 36.31%) and more last-authored (36.42% vs 23.57%) and middle-authored contributions (52.78% vs 40.12%). Leaders published more papers (average 78.42 vs 49.41), in Web of Science-indexed journals (average 49.44 vs 27.68), and had higher h-indices (19.66 vs 12.59) (all p < 0.001). They also more frequently co-authored in larger teams (>5 co-authors: 58.76% vs 51.79%, p < 0.001). Output inequality among leaders was high (Gini = 0.718). Gender trends differed: prolific leaders were mostly men, while prolific non-leaders were mostly women. Importantly, these authorship patterns remained consistent across leader subgroups with varying productivity levels.ConclusionsLeadership position significantly impacts authorship practices and research productivity in Lithuanian medical academia -leaders display different patterns of collaboration and authorship positions, along with considerable institutional and gender disparities. The results illustrate how hierarchical power dynamics shape academic publishing in Lithuanian medical institutions. This evaluation could lead to important changes for organizational development and policies that ensure authorship credit accurately reflects actual contributions to research. From a research ethics perspective, authorship involves both accountability and recognition. The leadership-related shifts we observe require ethical scrutiny; our bibliometric analysis reveals structural patterns but cannot determine whether specific papers meet ICMJE authorship criteria.
    Keywords:  academic ethics; authorship; bibliometrics; leadership; medical publishing; research integrity
    DOI:  https://doi.org/10.1177/15562646251392340
  19. Insights Imaging. 2025 Oct 30. 16(1): 233
       OBJECTIVES: To evaluate gender representation among editors-in-chief and deputy editors of radiology journals indexed in the 2024 Journal Citation Reports (JCR) and to analyze associations with bibliometric indicators and global economic classification.
    MATERIALS AND METHODS: A cross-sectional study was performed using publicly available data from radiology-related journals listed in the 2024 JCR (released June 2025). Journals were included if the editorial board composition was accessible online. Gender was identified through institutional profiles and standardized databases. Descriptive statistics summarized gender distribution. Associations between gender, editorial role, bibliometric performance, and World Bank income classification were tested using chi-square, Mann-Whitney U, Spearman's correlation, and nominal logistic regression.
    RESULTS: Of 204 eligible journals, 135 met the inclusion criteria, comprising 387 editorial members. Women represented 20.2% of all editors, 21.4% of deputy editors, and 18.4% of editors-in-chief. Female representation was highest in Q1 journals (26.0%) and lowest in Q2 (15.1%). A significant association was observed between Eigenfactor Score and female representation (p = 0.0494), whereas no association was found with journal impact factor or income classification. Geographic disparities were evident, with some countries achieving parity while others had no female representation.
    CONCLUSIONS: Gender inequities remain pronounced in radiology editorial leadership, particularly at the editor-in-chief level. Higher Eigenfactor Scores may modestly correlate with improved inclusion. Transparent policies and targeted interventions are required to address structural inequities and advance diversity in academic publishing.
    CRITICAL RELEVANCE STATEMENT: Gender disparities exist in radiology editorial leadership, and the Eigenfactor Score was found to be associated with female representation. By providing a comprehensive overview, the findings underscore the structural barriers that limit diversity and the importance of transparent, equity-focused editorial policies.
    KEY POINTS: Gender disparities persist in radiology editorial boards, with women underrepresented at both deputy editor and editor-in-chief levels. Eigenfactor Score, but not impact factor or national income classification, was significantly associated with increased female representation. Gender disparities persist across editorial leadership roles in radiology, underscoring the need for transparent policies and structural reforms to promote greater equity.
    Keywords:  Bibliometric analysis; Diversity in leadership; Editorial board; Gender equity; Radiology journals
    DOI:  https://doi.org/10.1186/s13244-025-02128-w