bims-skolko Biomed News
on Scholarly communication
Issue of 2024–08–04
thirty-one papers selected by
Thomas Krichel, Open Library Society



  1. Neurosurg Rev. 2024 Jul 31. 47(1): 380
      Publishing a scientific article in good journals with good Impact factor has become very difficult these days. This is not all depend on the quality of article. Most of times it's the lack of ability to pay the article processing fee. In Low and middle income countries (LMIC) it becomes more difficult as the research is not supported by government and institutions. Here we delve into the real problems of research article publication in LMIC.
    DOI:  https://doi.org/10.1007/s10143-024-02616-5
  2. R Soc Open Sci. 2024 Jul;11(7): 240313
      The scientific method is predicated on transparency-yet the pace at which transparent research practices are being adopted by the scientific community is slow. The replication crisis in psychology showed that published findings employing statistical inference are threatened by undetected errors, data manipulation and data falsification. To mitigate these problems and bolster research credibility, open data and preregistration practices have gained traction in the natural and social sciences. However, the extent of their adoption in different disciplines is unknown. We introduce computational procedures to identify the transparency of a research field using large-scale text analysis and machine learning classifiers. Using political science and international relations as an illustrative case, we examine 93 931 articles across the top 160 political science and international relations journals between 2010 and 2021. We find that approximately 21% of all statistical inference papers have open data and 5% of all experiments are preregistered. Despite this shortfall, the example of leading journals in the field shows that change is feasible and can be effected quickly.
    Keywords:  data sharing; journal policy; open science; preregistration
    DOI:  https://doi.org/10.1098/rsos.240313
  3. Nature. 2024 Jul 30.
      
    Keywords:  Machine learning; Policy; Scientific community
    DOI:  https://doi.org/10.1038/d41586-024-02371-z
  4. Ann Surg. 2024 Aug 01.
      We have assessed the chatbot Generative Pre-trained Transformer (ChatGPT), a type of Artificial Intelligence (AI) software designed to simulate conversations with human users, in an experiment designed to test its relevance to scientific writing. ChatGPT could become a promising and powerful tool for tasks such as automated draft generation, which may be useful in academic activities to make writing work faster and easier. However, the use of this tool in scientific writing raises some ethical concerns and therefore there have been calls for it to be regulated. It may be difficult to recognise whether an abstract or paper is written by a chatbot or a human being, because chatbots use advanced techniques, such as natural language processing and machine learning, to generate text that is similar to human writing. To detect the author is a complex task and requires thorough critical reading to reach a conclusion. The aim of this paper is, therefore, to explore the pros and cons of the use of chatbots in scientific writing.
    DOI:  https://doi.org/10.1097/SLA.0000000000006464
  5. J Dent. 2024 Jul 30. pii: S0300-5712(24)00444-5. [Epub ahead of print] 105275
       INTRODUCTION: Generative artificial intelligence (GenAI) Large-language models such as ChatGPT have become increasingly popular in various fields. However, the impact of ChatGPT on dental research writing has yet to be quantified. This study aimed to assess ChatGPT's usage in dental research writing and discuss potential advantages and challenges.
    METHODS: Using a bibliometric design, we performed a keyword analysis of specific 'signaling words' indicative of ChatGPT use in the titles/abstracts of 299,695 dental research abstracts indexed PubMed 2018-2024. Statistical comparisons using normalized ratios per 10,000 dental publications compared changes in word frequency before and after the ChatGPT release on November 30, 2022.
    RESULTS: Before ChatGPT's release, the frequency of abstracts with signaling words was 47.1 per 10,000 papers. After the release, this increased to 224.2 per 10,000 papers, an increase of 177.2 per 10,000 papers (p=0.014, 95% CI 53.5-300.7). The word 'delve' showed the most significant usage increase (increased ratio=17.0).
    CONCLUSIONS: This study is among the first to systematically assess the use of GenAI, specifically ChatGPT, in dental research. We found evidence of the use and growth of ChatGPT in dental research publications. This trend indicates the widespread adoption of GenAI-assisted writing in scientific communication, consistent with other scientific fields. While GenAI can potentially increase productivity and inclusivity, it raises concerns such as bias, inaccuracy, and distortion of academic incentives. Therefore, our findings support the need for clear AI guidelines and standards for academic publishing to ensure responsible use and maintain scientific integrity.
    Keywords:  Artificial intelligence; Large-language model; Scientific Communication, ChatGPT, Dental Research
    DOI:  https://doi.org/10.1016/j.jdent.2024.105275
  6. Br J Anaesth. 2024 Aug 01. pii: S0007-0912(24)00415-X. [Epub ahead of print]
      
    Keywords:  ChatGPT; academic publishing; artificial intelligence; detection; generative AI; peer review
    DOI:  https://doi.org/10.1016/j.bja.2024.06.037
  7. Insights Imaging. 2024 Aug 01. 15(1): 186
       OBJECTIVE: To evaluate whether and how the radiological journals present their policies on the use of large language models (LLMs), and identify the journal characteristic variables that are associated with the presence.
    METHODS: In this meta-research study, we screened Journals from the Radiology, Nuclear Medicine and Medical Imaging Category, 2022 Journal Citation Reports, excluding journals in non-English languages and relevant documents unavailable. We assessed their LLM use policies: (1) whether the policy is present; (2) whether the policy for the authors, the reviewers, and the editors is present; and (3) whether the policy asks the author to report the usage of LLMs, the name of LLMs, the section that used LLMs, the role of LLMs, the verification of LLMs, and the potential influence of LLMs. The association between the presence of policies and journal characteristic variables was evaluated.
    RESULTS: The LLM use policies were presented in 43.9% (83/189) of journals, and those for the authors, the reviewers, and the editor were presented in 43.4% (82/189), 29.6% (56/189) and 25.9% (49/189) of journals, respectively. Many journals mentioned the aspects of the usage (43.4%, 82/189), the name (34.9%, 66/189), the verification (33.3%, 63/189), and the role (31.7%, 60/189) of LLMs, while the potential influence of LLMs (4.2%, 8/189), and the section that used LLMs (1.6%, 3/189) were seldomly touched. The publisher is related to the presence of LLM use policies (p < 0.001).
    CONCLUSION: The presence of LLM use policies is suboptimal in radiological journals. A reporting guideline is encouraged to facilitate reporting quality and transparency.
    CRITICAL RELEVANCE STATEMENT: It may facilitate the quality and transparency of the use of LLMs in scientific writing if a shared complete reporting guideline is developed by stakeholders and then endorsed by journals.
    KEY POINTS: The policies on LLM use in radiological journals are unexplored. Some of the radiological journals presented policies on LLM use. A shared complete reporting guideline for LLM use is desired.
    Keywords:  Artificial intelligence; Guideline; Meta-research; Natural language processing; Radiology
    DOI:  https://doi.org/10.1186/s13244-024-01769-7
  8. Ann Biomed Eng. 2024 Aug 02.
      Recently, academic circles have raised concerns about academic citation partnerships. Many researchers receive emails offering these partnerships, often landing in their spam folders. In this paper, I refer to academic citation partnerships as unethical collaborative arrangements where researchers or authors agree to cite each other's work in their academic publications to enhance their academic profiles, often measured by metrics like the h-index. I discuss the characteristics of such partnerships, individuals, and groups who are commonly involved in academic citation partnerships, and clarify what is not considered an academic citation partnership. I argue that these partnerships are predatory and pose a serious threat to scholarly integrity. Such solicitations blur ethical boundaries by treating citations as commodities, similar to predatory journals and conferences. These partnerships compromise the authenticity of scholarly discourse, artificially inflate perceived impacts, and distort academic evaluations. They undermine the pursuit of knowledge for its intrinsic value and exacerbate inequalities in academia by favoring those who can manipulate citation metrics through resources or networks. Addressing this issue requires a commitment to vigilance and adherence to ethical citation standards, ensuring academic discourse that is intellectually honest and genuinely beneficial to academia.
    Keywords:  Academic citation partnership; Citation commodification; Ethical standards; Ethics; Scholarly integrity; h-index
    DOI:  https://doi.org/10.1007/s10439-024-03598-7
  9. Invest Ophthalmol Vis Sci. 2024 Aug 01. 65(10): 1
    Council of Vision Editors
      
    DOI:  https://doi.org/10.1167/iovs.65.10.1
  10. Nature. 2024 Aug;632(8023): 7
      
    Keywords:  Careers; Conferences and meetings; Publishing
    DOI:  https://doi.org/10.1038/d41586-024-02445-y
  11. Radiol Technol. 2024 Jul;95(6): 454-461
      
  12. Nature. 2024 Aug;632(8023): 26-28
      
    Keywords:  Ethics; Publishing; Research data; Scientific community
    DOI:  https://doi.org/10.1038/d41586-024-02449-8
  13. Nature. 2024 Aug;632(8023): 219-220
      
    Keywords:  Careers; Conferences and meetings; Publishing
    DOI:  https://doi.org/10.1038/d41586-024-02360-2
  14. Front Med (Lausanne). 2024 ;11 1405424
      The scientific community faces significant ethical challenges due to the "publish or perish" culture, particularly in developing and emerging economies. This paper explores the widespread unethical practices in scientific publishing, including the sale of authorships, the proliferation of "paper mills," and the misuse of artificial intelligence to produce fraudulent research. These practices undermine the integrity of scientific research, skew publication metrics, and distort academic rankings. This study examines various instances of academic fraud, emphasizing the impact on low-income countries, with specific cases from Latin America. Recommendations include stricter verification of authorship, disciplinary measures for scientific fraud, and policies promoting transparency and accountability in research. Addressing these challenges is crucial for maintaining the integrity and credibility of scientific endeavors globally.
    Keywords:  authorship for sale; ethical issues; low income; publishing; research integrity; science production
    DOI:  https://doi.org/10.3389/fmed.2024.1405424
  15. R Soc Open Sci. 2024 May;11(5): 240016
      Access to scientific data can enable independent reuse and verification; however, most data are not available and become increasingly irrecoverable over time. This study aimed to retrieve and preserve important datasets from 160 of the most highly-cited social science articles published between 2008-2013 and 2015-2018. We asked authors if they would share data in a public repository-the Data Ark-or provide reasons if data could not be shared. Of the 160 articles, data for 117 (73%, 95% CI [67%-80%]) were not available and data for 7 (4%, 95% CI [0%-12%]) were available with restrictions. Data for 36 (22%, 95% CI [16%-30%]) articles were available in unrestricted form: 29 of these datasets were already available and 7 datasets were made available in the Data Ark. Most authors did not respond to our data requests and a minority shared reasons for not sharing, such as legal or ethical constraints. These findings highlight an unresolved need to preserve important scientific datasets and increase their accessibility to the scientific community.
    Keywords:  data transparency; metaresearch; open data; open science; reproducibility; social science
    DOI:  https://doi.org/10.1098/rsos.240016
  16. Oral Surg Oral Med Oral Pathol Oral Radiol. 2024 Jun 12. pii: S2212-4403(24)00324-9. [Epub ahead of print]
      
    DOI:  https://doi.org/10.1016/j.oooo.2024.06.004
  17. R Soc Open Sci. 2024 May;11(5): 231309
      A broad understanding of the aims and objectives of the international open science movement was recently adopted with the 2021 UNESCO Recommendation on Open Science, expanding the focus of open science to include scientific knowledge, infrastructures, knowledge systems and the open engagement of societal actors. In response, recent discussions on science policy practice are shifting to the implementation of open science via national policies. While policy instruments to support some aspects of open science are well-studied, guidance on the emerging 'social' aspects of open science has lagged, prompting UNESCO to generate guidance. In this paper, several authors of the UNESCO Open Science Toolkit guidance document on 'Engaging societal actors in Open Science' synthesize the scholarly underpinnings behind its recommendations. This work draws upon a targeted search from academic, policy, and grey literature in the fields of open science and community engagement, with a special focus on citizen science, to derive guidance on how to overcome barriers to the uptake of societal engagement approaches. The results present building blocks of what an enabling environment for the open engagement of societal actors could look like, identifying key considerations and reflecting on opportunities and challenges for progressing and evaluating sound open engagement of societal actors into regional & national (open) science policies.
    Keywords:  citizen science; open access; open data; open science; policy recommendations; societal engagement
    DOI:  https://doi.org/10.1098/rsos.231309
  18. Proc Biol Sci. 2024 Jul;291(2027): 20241222
      In a growing digital landscape, enhancing the discoverability and resonance of scientific articles is essential. Here, we offer 10 recommendations to amplify the discoverability of studies in search engines and databases. Particularly, we argue that the strategic use and placement of key terms in the title, abstract and keyword sections can boost indexing and appeal. By surveying 230 journals in ecology and evolutionary biology, we found that current author guidelines may unintentionally limit article findability. Our survey of 5323 studies revealed that authors frequently exhaust abstract word limits-particularly those capped under 250 words. This suggests that current guidelines may be overly restrictive and not optimized to increase the dissemination and discoverability of digital publications. Additionally, 92% of studies used redundant keywords in the title or abstract, undermining optimal indexing in databases. We encourage adopting structured abstracts to maximize the incorporation of key terms in titles, abstracts and keywords. In addition, we encourage the relaxation of abstract and keyword limitations in journals with strict guidelines, and the inclusion of multilingual abstracts to broaden global accessibility. These recommendations to editors are designed to improve article engagement and facilitate evidence synthesis, thereby aligning scientific publishing with the modern needs of academic research.
    Keywords:  academic publishing; journal policies; literature review; online database search; open access; search engine optimization
    DOI:  https://doi.org/10.1098/rspb.2024.1222
  19. Cad Saude Publica. 2024 ;pii: S0102-311X2024000601408. [Epub ahead of print]40(6): e00076324
      In 2024, Cadernos de Saúde Pública (CSP) celebrates 40 years of uninterrupted publications. This article analyzes the trajectory of the journal and projects its future considering contemporary challenges in scientific publishing in the field of Public Health. This study was based on the analysis of main editorial policy milestones and the identification of the most popular topics. Three periods were recognized. In the "beginning" (1985 to 1990), the journal had restricted circulation, with a quarterly frequency. The word "epidemiology", used in a descriptive context, is highlighted. Then, in the period of "consolidation" (1991 to October 2012), CSP was indexed in the Index Medicus-MEDLINE database and had its online collection published by the Scientific Electronic Library Online (SciELO), expanding the reach of articles. In this period, the words that characterize the field of policy, planning, and management were clearly seen, and terms related to the epidemiological method emerged. The period of "diversity" (November 2012 to November 2023) introduced the requirement of an external editor to the Oswaldo Cruz Foundation's staff among the three co-editors-in-chief, aiming to ensure editorial independence. New activities and a similar frequency among the five most common terms highlight such "diversity". Several issues are observed in scientific publishing in 2024: non-commercial Open Science, artificial intelligence, appreciation of science, scientific dissemination, among others. Addressing new challenges in an ethical and transparent manner will allow future advances, maintaining CSP's credibility among authors and readers and its commitment to improvements in the living and health conditions of populations.
    DOI:  https://doi.org/10.1590/0102-311XPT076324
  20. Nat Commun. 2024 Jul 29. 15(1): 6380
      
    DOI:  https://doi.org/10.1038/s41467-024-50517-4
  21. J Bone Joint Surg Am. 2024 Jul 29.
      ➤ Sex and gender are inconsistently reported in musculoskeletal research. A panel of journal editors and other interested parties who participated in The Journal of Bone and Joint Surgery Sex and Gender Reporting in Musculoskeletal Research Symposium met in 2023 to help define the roles of journals and other stakeholders in addressing this issue.➤ This report summarizes the resulting recommendations and presents several different ways in which orthopaedic journals may elect to introduce to their readers, reviewers, and authors the importance of considering sex and gender in orthopaedic research.➤ Many current sex and gender-related funding agency mandates as well as the Sex and Gender Equity in Research (SAGER) guidelines are most readily applied to prospective research and/or randomized controlled trials.➤ The panel was supportive of endorsing SAGER or a similar set of guidelines as a tool that can help authors to consider the most effective means of evaluating the influences of sex and gender within the context of orthopaedic research.➤ Engaging readers, reviewers, and authors on multiple fronts, with purpose and intention, is likely the most important approach to increase awareness and to enhance the quality of evidence utilized to support clinical decisions in orthopaedic surgery.
    DOI:  https://doi.org/10.2106/JBJS.24.00035
  22. Australas Psychiatry. 2024 Aug 02. 10398562241270984
      
    Keywords:  correspondence; medical journal; peer review; publishing; scientific debate
    DOI:  https://doi.org/10.1177/10398562241270984
  23. Zhonghua Yi Shi Za Zhi. 2023 Nov 28. 53(6): 332-337
      Wenjiu YiBao is a professional acupuncture and moxibustion journal founded by The Oriental Acupuncture Scoiety in 1931, which aims to introduce and popularize Japanese Wenjiu(warm moxibustion) to Chinese readers. This article systematically introduces the editorial team, distribution situation, establishment of columns, and analyzes the reasons of its establishment.It is believed that the driving force of scientific trends and the need for teaching and communication are the reasons for its establishment. The characteristics of this journal include focusing on Wenjiu, promoting science, emphasizing practical effectiveness, and promoting teaching interaction. Wenjiu YiBao played a promoting role in the application of Japanese warm moxibustion and the development of warm moxibustion education in China. However, there are also shortcomings in exaggerating the efficacy of warm moxibustion, emphasizing too much of Western scientific thought, and translating Japanese warm moxibustion knowledge without further conducting local scientific research.
    DOI:  https://doi.org/10.3760/cma.j.cn112155-20230530-00051
  24. Eur J Radiol. 2024 Jul 18. pii: S0720-048X(24)00344-9. [Epub ahead of print]178 111628
       PURPOSE: Our study aimed to determine the current percentage of gender and sex equity promoting (GSEP) radiology journals, defined as satisfying at least one criterion of the Sex and Gender Equity in Research (SAGER) checklist, published by the European Association of Science Editors (EASE). A secondary objective was to compare characteristics of GSEP and non-GSEP journals.
    METHODS: A cross-sectional analysis between June 24 and July 3, 2023, was conducted. The author submission guidelines of radiology journals with a 2021 Journal Impact Factor (JIF) were assessed according to the SAGER checklist. GSEP journals were defined as satisfying one or more SAGER checklist criteria in their research instructions. Bibliometric data and journal information were collected from the Journal Citation Reports and National Library of Medicine catalogue.
    RESULTS: Only 39.7 % (52) of 132 journals satisfied at least one SAGER checklist criterion. Median 2021 JIFs were higher in GSEP journals (4.62, IQR: 3.73 - 5.21) than non-GSEP journals (2.70, IQR: 2.32) (p = 0.00). Median 2021 Journal Citation Index (JCI) scores were higher in GSEP (0.64, 0.56 - 0.73) than non-GSEP journals (0.97, 0.83 - 1.10) (p = 0.00). Cited half-life was shorter for GSEP (5.40, 4.80 - 6.50) than non-GSEP journals (6.70, 5.70 - 7.40) (p = 0.05). Elsevier published 33 of 52 of GSEP journals.
    CONCLUSION: 60.3% of radiology journals with a 2021 JIF do not meet a single SAGER checklist criterion in their author submission guidelines. GSEP journals had higher impact and source metrics and a shorter cited half-life. Publishers may play a significant role in promoting endorsement of the SAGER checklist in the author submission guidelines of radiology journals.
    Keywords:  Affirmative action; Gender inclusivity; Impact factor; Radiology; Research practice; SAGER guidelines
    DOI:  https://doi.org/10.1016/j.ejrad.2024.111628
  25. Science. 2024 Aug 02. 385(6708): 486-489
      Authors are increasingly paying to publish their papers open access. But is it fair or sustainable?
    DOI:  https://doi.org/10.1126/science.ads1013