bims-skolko Biomed News
on Scholarly communication
Issue of 2024–04–28
seventeen papers selected by
Thomas Krichel, Open Library Society



  1. PLoS One. 2024 ;19(4): e0302426
      Research data sharing has become an expected component of scientific research and scholarly publishing practice over the last few decades, due in part to requirements for federally funded research. As part of a larger effort to better understand the workflows and costs of public access to research data, this project conducted a high-level analysis of where academic research data is most frequently shared. To do this, we leveraged the DataCite and Crossref application programming interfaces (APIs) in search of Publisher field elements demonstrating which data repositories were utilized by researchers from six academic research institutions between 2012-2022. In addition, we also ran a preliminary analysis of the quality of the metadata associated with these published datasets, comparing the extent to which information was missing from metadata fields deemed important for public access to research data. Results show that the top 10 publishers accounted for 89.0% to 99.8% of the datasets connected with the institutions in our study. Known data repositories, including institutional data repositories hosted by those institutions, were initially lacking from our sample due to varying metadata standards and practices. We conclude that the metadata quality landscape for published research datasets is uneven; key information, such as author affiliation, is often incomplete or missing from source data repositories and aggregators. To enhance the findability, interoperability, accessibility, and reusability (FAIRness) of research data, we provide a set of concrete recommendations that repositories and data authors can take to improve scholarly metadata associated with shared datasets.
    DOI:  https://doi.org/10.1371/journal.pone.0302426
  2. Perspect Biol Med. 2023 ;66(3): 358-382
      The advancement of science requires the publication of research results so other scientists may examine, confirm, and build upon them, and the publishing ecosystem that mediates this process has undergone dramatic change over recent decades. This article takes a broad view of the biomedical research publishing system from its origins in the 17th century to the present day. It begins with a story from the author's lab that illustrates a scientist's complex interactions with the publishing system and then reviews the history, growth, and evolution of scientific publishing, including several recent disruptive developments: the digital transformation, the open access (OA) movement, the creation of "predatory journals," and the emergence of preprint archives. Each has influenced scientific peer review and editorial decision-making, two processes critical to the conduct of medical and scientific research and culture. After briefly discussing concerns about the impact of politics on editorial decision-making, the article closes with thoughts on the future evolution of this publishing ecosystem, which will impact the biomedical research ecosystem that depends upon it. Beyond accelerated speed and improved access to publications, the community should prioritize research aimed at further enhancing the quality and impact of published research, the core goal of the scientific enterprise.
    DOI:  https://doi.org/10.1353/pbm.2023.a902032
  3. Nature. 2024 Apr 25.
      
    Keywords:  Authorship; Peer review; Publishing; Research management
    DOI:  https://doi.org/10.1038/d41586-024-01235-w
  4. Acta Ortop Mex. 2024 Jan-Feb;38(1):38(1): 22-28
      Predatory journals are distinguished from legitimate journals by their lack of adequate reviews and editorial processes, compromising the quality of published content. These journals do not conduct peer reviews or detect plagiarism, and accept manuscripts without requiring substantial modifications. Their near 100% acceptance rate is driven by profit motives, regardless of the content they publish. While they boast a prestigious editorial board composed of renowned researchers, in most cases, it is a facade aimed at impressing and attracting investigators. Furthermore, these journals lack appropriate ethical practices and are non-transparent in their editorial processes. Predatory journals have impacted multiple disciplines, including Orthopedics and Traumatology, and their presence remains unknown to many researchers, making them unwitting victims. Their strategy involves soliciting articles via email from authors who have published in legitimate journals, promising quick, easy, and inexpensive publication. The implications and negative consequences of predatory journals on the scientific community and researchers are numerous. The purpose of this work is to provide general information about these journals, specifically in the field of Orthopedics and Traumatology, offering guidelines to identify and avoid them, so that authors can make informed decisions when publishing their manuscripts and avoid falling into the hands of predatory journals or publishers.
    Keywords:  academic indexing; ethics; predatory journals; predatory publishing; research; scientific publication
  5. J Vet Pharmacol Ther. 2024 Apr 23.
      In recent years, especially since the COVID-19 pandemic, the number of predatory journals has increased significantly. Predatory journals exploit the "open-access model" by engaging in deceptive practices such as charging high publication fees without providing the expected quality and performing insufficient or no peer review. Such behaviors undermine the integrity of scientific research and can result in researchers having trouble identifying reputable publication opportunities, particularly early-career researchers who struggle to understand and establish the correct criteria for publication in reputable journals. Publishing in journals that do not fully cover the criteria for scientific publication is also an ethical issue. This review aimed to describe the characteristics of predatory journals, differentiate between reliable and predatory journals, investigate the reasons that lead researchers to publish in predatory journals, evaluate the negative impact of predatory publications on the scientific community, and explore future perspectives. The authors also provide some considerations for researchers (particularly early-career researchers) when selecting journals for publication, explaining the role of metrics, databases, and artificial intelligence in manuscript preparation, with a specific focus on and relevance to publication in veterinary medicine.
    Keywords:  legitimate journals; predatory journals; research; scientific integrity; veterinary medicine
    DOI:  https://doi.org/10.1111/jvp.13448
  6. Nature. 2024 Apr;628(8009): 689-690
      
    Keywords:  Chemistry; Materials science; Publishing; Scientific community
    DOI:  https://doi.org/10.1038/d41586-024-01174-6
  7. Am J Perinatol. 2024 Apr 23.
       OBJECTIVE:  To evaluate the reliability of three artificial intelligence (AI) chatbots (ChatGPT, Google Bard, and Chatsonic) in generating accurate references from existing obstetric literature.
    STUDY DESIGN:  Between mid-March and late April 2023, ChatGPT, Google Bard, and Chatsonic were prompted to provide references for specific obstetrical randomized controlled trials (RCTs) published in 2020. RCTs were considered for inclusion if they were mentioned in a previous article that primarily evaluated RCTs published by the top medical and obstetrics and gynecology journals with the highest impact factors in 2020 as well as RCTs published in a new journal focused on publishing obstetric RCTs. The selection of the three AI models was based on their popularity, performance in natural language processing, and public availability. Data collection involved prompting the AI chatbots to provide references according to a standardized protocol. The primary evaluation metric was the accuracy of each AI model in correctly citing references, including authors, publication title, journal name, and digital object identifier (DOI). Statistical analysis was performed using a permutation test to compare the performance of the AI models.
    RESULTS:  Among the 44 RCTs analyzed, Google Bard demonstrated the highest accuracy, correctly citing 13.6% of the requested RCTs, whereas ChatGPT and Chatsonic exhibited lower accuracy rates of 2.4 and 0%, respectively. Google Bard often substantially outperformed Chatsonic and ChatGPT in correctly citing the studied reference components. The majority of references from all AI models studied were noted to provide DOIs for unrelated studies or DOIs that do not exist.
    CONCLUSION:  To ensure the reliability of scientific information being disseminated, authors must exercise caution when utilizing AI for scientific writing and literature search. However, despite their limitations, collaborative partnerships between AI systems and researchers have the potential to drive synergistic advancements, leading to improved patient care and outcomes.
    KEY POINTS: · AI chatbots often cite scientific articles incorrectly.. · AI chatbots can create false references.. · Responsible AI use in research is vital..
    DOI:  https://doi.org/10.1055/s-0044-1786033
  8. Proc Natl Acad Sci U S A. 2024 Apr 30. 121(18): e2406826121
      
    DOI:  https://doi.org/10.1073/pnas.2406826121
  9. J Microbiol Biol Educ. 2024 Apr 25. 25(1): e0015623
      Students that graduate with degrees in science may pursue a variety of career roles. Many of these roles may require them to read primary scientific literature (PSL) or even write up their own manuscripts for submission. While literature has recognized the importance of integrating PSL into undergraduate curriculum, it is also important for students to recognize the writing process that one may need to take part in if they seek to disseminate their own publications. This article will go through a research assignment that was given to an introductory journal club class for biology majors at a large R1 Hispanic-serving Institution. This assignment was designed to mirror the publication process at many journals including drafting a manuscript, integrating editor recommendations, and drafting a letter to the editor. In the end, students produce a review paper while becoming more familiar with the traditional publication process. In turn, this can prepare them to eventually seek to publish their own manuscripts.
    Keywords:  journal club; manuscript; primary scientific literature; scientific writing
    DOI:  https://doi.org/10.1128/jmbe.00156-23
  10. Lancet. 2024 Apr 20. pii: S0140-6736(24)00587-7. [Epub ahead of print]403(10436): 1538-1539
      
    DOI:  https://doi.org/10.1016/S0140-6736(24)00587-7
  11. Int J Exerc Sci. 2024 ;17(7): 25-37
      To demonstrate how post-publication peer reviews-using journal article reporting standards-could improve the design and write-up of kinesiology research, the authors performed a post-publication peer review on one systematic literature review published in 2020. Two raters (1st & 2nd authors) critically appraised the case article between April and May 2021. The latest Journal Article Reporting Standards by the American Psychological Association relevant to the review were used: i.e., Table 1 (quantitative research standards) and Table 9 (research synthesis standards). A standard fully met was deemed satisfactory. Per Krippendorff's alpha-coefficient, inter-rater agreement was moderate for Table 1 (k-alpha = .57, raw-agreement = 72.2%) and poor for Table 9 (k-alpha = .09, raw-agreement = 53.6%). A 100% consensus was reached on all discrepancies. Results suggest the case article's Abstract, Methods, and Discussion sections required clarification or more detail. Per Table 9 standards, four sections were largely incomplete: i.e., Abstract (100%-incomplete), Introduction (66%-incomplete), Methods (75%-incomplete), and Discussion (66%-incomplete). Case article strengths included tabular summary of studies analyzed in the systematic review and a cautionary comment about the review's generalizability. The article's write-up gave detail to help the reader understand the scope of the study and decisions made by the authors. However, adequate detail was not provided to assess the credibility of all claims made in the article. This could affect readers' ability to obtain critical and nuanced understanding of the article's topics. The results of this critique should encourage (continuing) education on journal article reporting standards for diverse stakeholders (e.g., authors, reviewers).
    Keywords:  Case study; content analysis; metascience; replication science; reproducibility; research methods; sport and exercise science; technical note
  12. BJA Educ. 2024 May;24(5): 147-154
      
    Keywords:  communication; disclosure; ethics; legislation; medical
    DOI:  https://doi.org/10.1016/j.bjae.2024.02.001
  13. J Hist Dent. 2024 ;72(1): 68-70
      Publication of dental textbooks was a thriving business years ago and multiple publishing house entered the work place. Historical reflections on one of the early dental publishers coming in Philadelphia over 100 yrs ago are highlighted.
    Keywords:  Blakiston; Philadelphia; Textbooks
    DOI:  https://doi.org/10.58929/jhd.2024.072.01.68
  14. Nature. 2024 Apr 25.
      
    Keywords:  Careers; Economics; Lab life; Publishing
    DOI:  https://doi.org/10.1038/d41586-024-01246-7