bims-skolko Biomed News
on Scholarly communication
Issue of 2023–08–13
sixteen papers selected by
Thomas Krichel, Open Library Society



  1. PLoS One. 2023 ;18(8): e0289380
      Transparency and peer control are cornerstones of good scientific practice and entail the replication and reproduction of findings. The feasibility of replications, however, hinges on the premise that original researchers make their data and research code publicly available. This applies in particular to large-N observational studies, where analysis code is complex and may involve several ambiguous analytical decisions. To investigate which specific factors influence researchers' code sharing behavior upon request, we emailed code requests to 1,206 authors who published research articles based on data from the European Social Survey between 2015 and 2020. In this preregistered multifactorial field experiment, we randomly varied three aspects of our code request's wording in a 2x4x2 factorial design: the overall framing of our request (enhancement of social science research, response to replication crisis), the appeal why researchers should share their code (FAIR principles, academic altruism, prospect of citation, no information), and the perceived effort associated with code sharing (no code cleaning required, no information). Overall, 37.5% of successfully contacted authors supplied their analysis code. Of our experimental treatments, only framing affected researchers' code sharing behavior, though in the opposite direction we expected: Scientists who received the negative wording alluding to the replication crisis were more likely to share their research code. Taken together, our results highlight that the availability of research code will hardly be enhanced by small-scale individual interventions but instead requires large-scale institutional norms.
    DOI:  https://doi.org/10.1371/journal.pone.0289380
  2. Rambam Maimonides Med J. 2023 Jul 31. 14(3):
       INTRODUCTION: When authorship disputes arise in academic publishing, research institutions may be asked to investigate the circumstances. We evaluated the association between the prevalence of misattributed authorship and trust in the institution involved.
    METHODS: We measured trust using a newly validated Opinion on the Institution's Research and Publication Values (OIRPV) scale (range 1-4). Mayer and Davies' Organizational Trust for Management Instrument served as control. Association between publication misconduct, gender, institution type, policies, and OIRPV-derived Trust Scores were evaluated.
    RESULTS: A total of 197 responses were analyzed. Increased reporting of authorship misconduct, such as gift authorship, author displacement within the authors' order on the byline, and ghost authorship, were associated with low Trust Scores (P<0.001). Respondents from institutions whose administration had made known (declared or published) their policy on authorship in academic publications awarded the highest Trust Scores (median 3.06, interquartile range 2.25 to 3.56). Only 17.8% favored their administration as the best authority to investigate authorship dispute honestly. Of those who did not list the administration as their preferred option for resolving disputes, 58.6% (95/162) provided a Trust Score <2.5, which conveys mistrust in the institution.
    CONCLUSIONS: Increased reporting of publication misconducts such as gift authorship, author displacement within the order of the authors' byline, and ghost authorship was associated with lower Trust Scores in the research institutions. Institutions that made their policies known were awarded the highest Trust Scores. Our results question whether the research institutions' administrations are the appropriate authority for clarifying author disputes in all cases.
    DOI:  https://doi.org/10.5041/RMMJ.10503
  3. Digit Health. 2023 Jan-Dec;9:9 20552076231176654
      Medical journal websites frequently contain tracking code that transfers data about journal readers to third parties. These data give drug, device, and other medical product companies a potentially powerful resource for targeting advertisements and other marketing materials to journal readers based on unique attributes and medical interests that can be inferred from the articles they read. Thus, while editors may strictly regulate the content of advertisements that such companies place in their journals' pages, they simultaneously provide those companies with the means to target readers in other forums, possibly in ways that subvert editorial guidelines. We examine the implications of third-party tracking on medical journal webpages, and recommend actions that publishers, editors, and academic societies can take to curb it.
    Keywords:  Third-party tracking; digital privacy; medical journals
    DOI:  https://doi.org/10.1177/20552076231176654
  4. Respir Care. 2023 Aug 08. pii: respcare.11370. [Epub ahead of print]
      Research is often presented at scientific conferences in abstract form. Unfortunately, a large percentage of abstracts are never published as a full manuscript, but having a strong department process for research can increase the number of abstracts published as manuscripts. Publishing as a full manuscript is critical to the advancement of science due to the rigor of the peer review process. This manuscript covers common reasons abstracts are not published as manuscripts, tips to overcome mistakes, how to respond to reviewer comments, and specific tips to avoid flaws in each manuscript section.
    Keywords:  abstract; manuscript; national meeting; research; research methodology; respiratory care
    DOI:  https://doi.org/10.4187/respcare.11370
  5. Clin Microbiol Infect. 2023 Aug 08. pii: S1198-743X(23)00364-6. [Epub ahead of print]
      
    Keywords:  Academic promotion; Decision letters; Peer review; Pre-prints; Universities
    DOI:  https://doi.org/10.1016/j.cmi.2023.08.002
  6. ESMO Open. 2023 Aug 08. pii: S2059-7029(23)00855-4. [Epub ahead of print]8(4): 101620
      
    DOI:  https://doi.org/10.1016/j.esmoop.2023.101620
  7. JMA J. 2023 Jul 14. 6(3): 362-363
      
    Keywords:  attending doctor; publication; responsibility; trainee; writing papers
    DOI:  https://doi.org/10.31662/jmaj.2023-0029
  8. Chest. 2023 Aug;pii: S0012-3692(23)00652-9. [Epub ahead of print]164(2): 478-480
      
    DOI:  https://doi.org/10.1016/j.chest.2023.05.003
  9. JMA J. 2023 Jul 14. 6(3): 337-338
      Some specialties require publishing a paper as a prerequisite for becoming a Japanese Medical Specialty Board Specialist. Taking obstetrics and gynecology as an example, we wish to describe some concerns about this. Time limitations oblige residents to publish papers in non-PubMed journals with smaller circulations. Once data have been published, later attempts at secondary publication are difficult. This may bury some important data. Requiring an English presentation and writing an English abstract as a prerequisite for a board specialty may be an option to avoid this. Although we believe that the experience of publishing a paper during residency is important, how to deal with this issue needs further consideration.
    Keywords:  certified doctor; obstetrics and gynecology specialist; publishing paper; specialist
    DOI:  https://doi.org/10.31662/jmaj.2023-0014
  10. J Surg Res. 2023 Aug 03. pii: S0022-4804(23)00323-2. [Epub ahead of print]
       INTRODUCTION: Publication bias describes a phenomenon in which significant positive results have a higher likelihood of being published compared to negative or nonsignificant results. Publication bias can confound the estimated therapeutic effect in meta-analyses and needs to be adequately assessed in the surgical literature.
    METHODS: A review of meta-analyses published in five plastic surgery journals from 2002 to 2022 was conducted. The inclusion criteria for meta-analyses were factors that demonstrated an obligation to assess publication bias, such as interventions with comparable treatment groups and enough power for statistical analysis. Acknowledgment of publication bias risk, quality of bias assessment, methods used in assessment, and individual article factors were analyzed.
    RESULTS: 318 unique meta-analyses were identified in literature search, and after full-text reviews, 143 met the inclusion criteria for obligation to assess publication bias. 64% of eligible meta-analyses acknowledged the confounding potential of publication bias, and only 46% conducted a formal assessment. Of those who conducted an assessment, 49% used subjective inspection of funnel plots alone, while 47% used any statistical testing in analysis. Overall, only 9/143 (6.3%) assessed publication bias and attempted to correct for its effect. Journals with a higher average impact factor were associated with mention and assessment of publication bias, but more recent publication year and higher number of primary articles analyzed were not.
    CONCLUSIONS: This review identified low rates of proper publication bias assessment in meta-analyses published in five major plastic surgery journals. Assessment of publication bias using objective statistical testing is necessary to ensure quality literature within surgical disciplines.
    Keywords:  Biostatistics; Meta-analysis; Publication bias; Research bias; Research methods; Systematic review
    DOI:  https://doi.org/10.1016/j.jss.2023.06.052
  11. Belitung Nurs J. 2022 ;8(5): 378-380
      The "pressure" or "passion" to publish is a common reality in academia. All faculty are required to demonstrate that they are engaged in research and that their work is disseminated in reputable journals. However, writing manuscripts is quite challenging; some papers for publication may take days, weeks, months, and even years. This editorial aims to provide the editors' points of view to assist authors in successful acceptance and publication in an international nursing journal.
    Keywords:  authorship; editorial policy; novelty; peer review
    DOI:  https://doi.org/10.33546/bnj.2367
  12. J Korean Med Sci. 2023 Aug 07. 38(31): e240
      Plagiarism is among commonly identified scientific misconducts in submitted manuscripts. Some journals routinely check the level of text similarity in the submitted manuscripts at the time of submission and reject the submission on the fly if the text similarity score exceeds a set cut-off value (e.g., 20%). Herein, I present a manuscript with 32% text similarity, yet without any instances of text plagiarism. This underlines the fact that text similarity is not necessarily tantamount to text plagiarism. Every instance of text similarity should be examined with scrutiny by a trained person in the editorial office. A high text similarity score does not always imply plagiarism; a low score, on the other hand, does not guarantee absence of plagiarism. There is no cut-off for text similarity to imply text plagiarism.
    Keywords:  Journalism; Plagiarism; Publication Ethics; Scientific Writing; Text Similarity; Verbatim
    DOI:  https://doi.org/10.3346/jkms.2023.38.e240
  13. Nature. 2023 Aug;620(7973): 456-457
      
    Keywords:  Authorship; Machine learning; Publishing; Research data; Research management
    DOI:  https://doi.org/10.1038/d41586-023-01907-z
  14. J Am Coll Radiol. 2023 Aug 07. pii: S1546-1440(23)00547-1. [Epub ahead of print]
      
    Keywords:  Large language model; journal polices; natural language processing
    DOI:  https://doi.org/10.1016/j.jacr.2023.08.001