bims-skolko Biomed News
on Scholarly communication
Issue of 2023–05–21
thirty-two papers selected by
Thomas Krichel, Open Library Society



  1. PLoS One. 2023 ;18(5): e0284866
      One of the main factors that attracts authors to choose a journal is the time interval between submission and publication, which varies between journals and subject matter. Here, we evaluated the time intervals between submission and publication according to journal impact factor and continent of author's affiliation, considering articles with authors from single or multiple continents. Altogether, 72 journals indexed in the Web of Science database within the subject matter "Genetics and Heredity", divided by impact factor into four quartiles and randomly selected were analyzed for time intervals from article submission to publication. Data from a total of 46,349 articles published from 2016 to 2020 were collected and analyzed considering the following time intervals: submission to acceptance (SA), acceptance to publication (AP) and submission to publication (SP). The median of the quartiles for the SP interval was 166 (IQR [118-225]) days for Q1, 147 (IQR [103-206]) days for Q2, 161 (IQR [116-226]) days for Q3 and 137 (IQR [69-264]) days for Q4, showing a significant difference among quartiles (p < 0.001). In Q4, median interval of time was shorter in interval SA but longer in interval AP, and overall, articles in Q4 had the shortest interval of time in SP. A potential association of the median time interval and authors' continent was analysed and no significant difference was observed between articles with authors from single versus multiple continents or between continents in articles with authors from only one continent. However, in journals from Q4, time from submission to publication was longer for articles with authors from North America and Europe than from other continents, although the difference was not significant. Finally, articles of authors from the African continent had the smallest representation in journals from Q1-Q3 and articles from Oceania were underrepresented in group Q4. The study provides a global analysis of the total time required for submission, acceptance and publication in journals in the field of genetics and heredity. Our results may contribute in the development of strategies to expedite the process of scientific publishing in the field, and to promote equity in knowledge production and dissemination for researchers from all continents.
    DOI:  https://doi.org/10.1371/journal.pone.0284866
  2. J Am Acad Dermatol. 2023 May 11. pii: S0190-9622(23)00747-8. [Epub ahead of print]
      
    Keywords:  Academic Publishing; Artificial Intelligence (AI); ChatGPT; Dermatology Journals; Gender Bias; Large Language Model (LLM); Machine Learning (ML); Racial Bias; Scientific Integrity
    DOI:  https://doi.org/10.1016/j.jaad.2023.04.045
  3. Eur J Orthod. 2023 May 15. pii: cjad022. [Epub ahead of print]
       AIM: To assess the quality of reporting of Scoping Reviews (ScRs) in Orthodontics according to the PRISMA Extension Checklist for Scoping Reviews (PRISMA-ScR). Our secondary aim was to identify publication characteristics, such as year of publication, journal, inclusion of a reporting guideline, and study registration, associated with ScRs reporting quality.
    MATERIALS AND METHODS: Pubmed, Scopus, and Web of Science Core Collection were searched as of 1 August 2022 for identification of orthodontic ScRs. This was supplemented by electronic searches within the contents of eleven specialty journals. The item-specific and overall reporting quality score of the examined orthodontic ScRs, based on the PRISMA Extension Checklist for Scoping Reviews were recorded. Association of reporting quality score with publication characteristics was further examined.
    RESULTS: A total of 40 ScRs were identified and included, with a mean reporting quality score of 73.0 per cent (standard deviation = 14). The majority of studies were published from 2020 onwards (32/40; 80.0%). Of the most adequately reported items were the summary of the evidence description in the Discussion (38/40; 95.0%) and the selection of the sources of evidence in the Results section (34/40; 85.0%). Protocol registration and reporting of limitations were missed in almost half of the ScRs (19/40; 47.5%), while less than half studies were adequately justified (18/40; 45.0%). According to the multivariable linear regression, adherence to appropriate reporting guidelines resulted in improved reporting quality score by 10 per cent (β-coefficient: 0.10; 95% CI: 0.002, 0.19; P = 0.04), conditional on year and journal of publication. Year, journal of publication, and registration practices did not appear as significant predictors (P > 0.05 in all instances).
    CONCLUSIONS: The reporting quality of the examined orthodontic ScRs was suboptimal, with questionable justification for their conduct and certain items being mostly affected.
    DOI:  https://doi.org/10.1093/ejo/cjad022
  4. J Coll Physicians Surg Pak. 2023 Apr;33(4): 367-368
      Null.
    DOI:  https://doi.org/10.29271/jcpsp.2023.04.367
  5. STAR Protoc. 2023 May 17. pii: S2666-1667(23)00131-4. [Epub ahead of print]4(2): 102173
      Effie Bastounis recently started a lab at the University of Tübingen that studies how physical forces guide the interactions of host cells with bacterial pathogens. Former STAR Protocols Lead editor Shawnna Buttery discussed with Effie her experience publishing research at Cell Press journals and how that led to her publishing in STAR Protocols. Effie also shared her thoughts on the usefulness of protocols journals and the importance of protocols to a new PI. For more information on the protocols related to this backstory, please refer to Muenkel et al.1 and Bastounis et al.2.
    DOI:  https://doi.org/10.1016/j.xpro.2023.102173
  6. Prev Sci. 2023 May 13.
      Evidence-based policy uses intervention research to inform consequential decisions about resource allocation. Research findings are often published in peer-reviewed journals. Because detrimental research practices associated with closed science are common, journal articles report more false-positives and exaggerated effect sizes than would be desirable. Journal implementation of standards that promote open science-such as the transparency and openness promotion (TOP) guidelines-could reduce detrimental research practices and improve the trustworthiness of research evidence on intervention effectiveness. We evaluated TOP implementation at 339 peer-reviewed journals that have been used to identify evidence-based interventions for policymaking and programmatic decisions. Each of ten open science standards in TOP was not implemented in most journals' policies (instructions to authors), procedures (manuscript submission systems), or practices (published articles). Journals implementing at least one standard typically encouraged, but did not require, an open science practice. We discuss why and how journals could improve implementation of open science standards to safeguard evidence-based policy.
    Keywords:  Evidence clearinghouse; Evidence-based policy; Open science; TOP guidelines
    DOI:  https://doi.org/10.1007/s11121-023-01543-z
  7. Diagnosis (Berl). 2023 Apr 27.
      
    Keywords:  blacklists; diagnostic criteria; publishing malpractice; sensitivity; specificity; transparency
    DOI:  https://doi.org/10.1515/dx-2023-0039
  8. Contraception. 2023 May 17. pii: S0010-7824(23)00139-7. [Epub ahead of print] 110066
      
    Keywords:  Academic publishing; diversity; equity; inclusion; journal practices
    DOI:  https://doi.org/10.1016/j.contraception.2023.110066
  9. J Commun Disord. 2023 May 12. pii: S0021-9924(23)00038-2. [Epub ahead of print]104 106338
       BACKGROUND: A common complaint of people with aphasia and their families is their inability to find information about current aphasia treatment research (Hinckley, Boyle, Lombard & Bartels-Tobin, 2014; Hinckley & El-Khouri, 2021). Plain language summaries, video summaries, and graphical summaries are three ways to disseminate research results that are more accessible to a broader audience. The purpose of this tutorial is to discuss the motivations for disseminating research in understandable ways, and to provide information and resources on how aphasia-friendly dissemination can be done.
    METHOD: We report an overview of evidence on the importance of and characteristics of dissemination. Next, we provide specific characteristics and resources for producing plain language summaries, video summaries, and graphical abstracts. Finally, we conducted a systematic search for journals in the area of stroke rehabilitation after consultation with a research librarian. The publication webpages of each journal were inspected to gather information about whether and how the journal published plain language summaries, video summaries, or graphical abstracts. Editors were contacted as needed to complete the information. Sixty journals in stroke rehabilitation were identified, and a total of 43 journals (71%) publish video abstracts, graphical summaries, and/or plain language summaries either independently or through third-party platforms.
    CONCLUSIONS: The findings are discussed in the context of the importance of making research consumer-friendly. We offer specific recommendations for aphasia researchers, and future directions for publishing research in ways that will have an impact on the broader public are suggested.
    Keywords:  Aphasia; Communication disorders; Dissemination; Plain language
    DOI:  https://doi.org/10.1016/j.jcomdis.2023.106338
  10. Lancet Infect Dis. 2023 May 10. pii: S1473-3099(23)00290-6. [Epub ahead of print]
      
    DOI:  https://doi.org/10.1016/S1473-3099(23)00290-6
  11. Comput Econ. 2023 ;61(4): 1433-1476
      Contemporary debates about scientific institutions and practice feature many proposed reforms. Most of these require increased efforts from scientists. But how do scientists' incentives for effort interact? How can scientific institutions encourage scientists to invest effort in research? We explore these questions using a game-theoretic model of publication markets. We employ a base game between authors and reviewers, before assessing some of its tendencies by means of analysis and simulations. We compare how the effort expenditures of these groups interact in our model under a variety of settings, such as double-blind and open review systems. We make a number of findings, including that open review can increase the effort of authors in a range of circumstances and that these effects can manifest in a policy-relevant period of time. However, we find that open review's impact on authors' efforts is sensitive to the strength of several other influences.
    Keywords:  Agent-based model; Double-blind peer review; Evolutionary game theory; Open review; Publication markets; Simulation
    DOI:  https://doi.org/10.1007/s10614-022-10250-w
  12. BMJ Glob Health. 2023 Apr;pii: e012224. [Epub ahead of print]8(4):
      High-quality peer-reviewer training open to researchers across the globe has the potential to improve the published literature, however, this type of training is not widely available. In this paper, we describe an online peer-reviewer training programme, highlight its effectiveness in building peer review and writing skills, and discuss challenges and lessons learnt. This training programme, open to researchers across the globe, acquaints participants with challenges to and inequities in publishing and educates them about writing effective peer reviews. A focal point is how to provide specific and respectful feedback to help authors get accepted for peer review at an academic journal. Forty-nine participants from or residing in six continents completed the training. All programme evaluation respondents agreed that the orientation helped them gain a better understanding of their role as a peer reviewer at Pre-Publication Support Service. Most agreed that the training was helpful in improving their peer-review skills, and that the training was helpful in improving their writing skills. Participants wanted more networking and collaboration opportunities with other peer reviewers, inclusion of a qualitatively researched example paper and improved communication about the required time commitment. Our online programme with multiple time options was geographically inclusive but internet connectivity was challenging for some participants. Peer-reviewer training programmes can help researchers build their peer review and writing skills and enhance participants' understanding of disparities in publishing. Integrating a geographically diverse group of researchers has the potential to enrich the discussions and learning in such a programme.
    Keywords:  public health
    DOI:  https://doi.org/10.1136/bmjgh-2023-012224
  13. Res Integr Peer Rev. 2023 May 18. 8(1): 4
       BACKGROUND: The emergence of systems based on large language models (LLMs) such as OpenAI's ChatGPT has created a range of discussions in scholarly circles. Since LLMs generate grammatically correct and mostly relevant (yet sometimes outright wrong, irrelevant or biased) outputs in response to provided prompts, using them in various writing tasks including writing peer review reports could result in improved productivity. Given the significance of peer reviews in the existing scholarly publication landscape, exploring challenges and opportunities of using LLMs in peer review seems urgent. After the generation of the first scholarly outputs with LLMs, we anticipate that peer review reports too would be generated with the help of these systems. However, there are currently no guidelines on how these systems should be used in review tasks.
    METHODS: To investigate the potential impact of using LLMs on the peer review process, we used five core themes within discussions about peer review suggested by Tennant and Ross-Hellauer. These include 1) reviewers' role, 2) editors' role, 3) functions and quality of peer reviews, 4) reproducibility, and 5) the social and epistemic functions of peer reviews. We provide a small-scale exploration of ChatGPT's performance regarding identified issues.
    RESULTS: LLMs have the potential to substantially alter the role of both peer reviewers and editors. Through supporting both actors in efficiently writing constructive reports or decision letters, LLMs can facilitate higher quality review and address issues of review shortage. However, the fundamental opacity of LLMs' training data, inner workings, data handling, and development processes raise concerns about potential biases, confidentiality and the reproducibility of review reports. Additionally, as editorial work has a prominent function in defining and shaping epistemic communities, as well as negotiating normative frameworks within such communities, partly outsourcing this work to LLMs might have unforeseen consequences for social and epistemic relations within academia. Regarding performance, we identified major enhancements in a short period and expect LLMs to continue developing.
    CONCLUSIONS: We believe that LLMs are likely to have a profound impact on academia and scholarly communication. While potentially beneficial to the scholarly communication system, many uncertainties remain and their use is not without risks. In particular, concerns about the amplification of existing biases and inequalities in access to appropriate infrastructure warrant further attention. For the moment, we recommend that if LLMs are used to write scholarly reviews and decision letters, reviewers and editors should disclose their use and accept full responsibility for data security and confidentiality, and their reports' accuracy, tone, reasoning and originality.
    Keywords:  Academic writing; ChaGPT; Editorial practices; Generative AI; Large Language Models; Peer review
    DOI:  https://doi.org/10.1186/s41073-023-00133-5
  14. ChemistryOpen. 2023 May;12(5): e202300021
      Used by nearly 60 % of the world's population, social media are highly interactive websites ("platforms") today widely used also by researchers. This perspective aims at identifying the main benefits of social media utilization by chemistry scholars with respect to the three main dimensions (research, education and societal service) of scholarly activity. The main risks arising from the use of social media, as we suggest in the conclusions, must be managed and new education on their purposeful utilization should be planned and delivered.
    Keywords:  academic social networks; communication of chemistry; open science; public engagement; social media
    DOI:  https://doi.org/10.1002/open.202300021
  15. Respir Care. 2023 May 16. pii: respcare.11101. [Epub ahead of print]
      Presenting research at scientific meetings is an important part of the dissemination of research findings. Abstracts are an abbreviated form of a research study presented at a meeting of a professional society. Common elements include background, methods, results, and conclusions. Each section should be carefully written to maximize the chances of acceptance. This paper will cover how to write an abstract for a presentation at a scientific meeting and common mistakes that authors make when writing abstracts.
    Keywords:  abstract; national meeting; research; research methodology; respiratory care
    DOI:  https://doi.org/10.4187/respcare.11101
  16. J Clin Epidemiol. 2023 May 15. pii: S0895-4356(23)00121-X. [Epub ahead of print]
      Multiple guideline tools are available for systematic reviews. These tools intend to standardize protocol development, require comprehensive reporting, and improve methodological rigor, including risk of bias assessment of primary studies and appraisal of the conduct of the reviews themselves. We recently published a guidance paper concerning these instruments and we hope that it will prove useful to producers, appraisers, and users of systematic reviews. There are still numerous open frontiers in improving systematic reviews. These include but are not limited to training of systematic reviewers; education of peer-reviewers, editors, and publishers; improving funder-based incentives, diminishing redundancy, increasing transparency, requiring protocol registration, confirming reporting and conduct standards, and establishing expectations of current meta-analysis methods. Each of these issues has caveats and challenges. Moreover, too many influential reviews continue to be non-systematic and expert opinion based. We need to understand why these reviews continue to be favored in the literature. Additional opportunities and need for research arise in the connection between primary evidence and systematic reviews. In some cases, the two may become indistinguishable. Living reviews become increasingly attractive in the currently evolving research circumstances but require additional safeguards. The connection between systematic reviews and guidelines or other implementation and decision-making tools is transitioning as well. Guidance efforts gain increasing attention, and may indeed help improve evidence synthesis but proper meta-research is needed to rigorously assess any improvements. We should maximize the contribution of systematic reviews, but also reduce the chances of producing checklist-heavy, ritual-burdened documents of questionable utility.
    Keywords:  critical appraisal; evidence synthesis; meta-research; methodological quality; methodology; research integrity; systematic review
    DOI:  https://doi.org/10.1016/j.jclinepi.2023.05.008
  17. Musculoskelet Sci Pract. 2023 Apr 28. pii: S2468-7812(23)00054-1. [Epub ahead of print] 102769
      
    DOI:  https://doi.org/10.1016/j.msksp.2023.102769
  18. Anesth Pain Med (Seoul). 2023 Apr;18(2): 97-103
      Preprints are preliminary research reports that have not yet been peer-reviewed. They have been widely adopted to promote the timely dissemination of research across many scientific fields. In August 1991, Paul Ginsparg launched an electronic bulletin board intended to serve a few hundred colleagues working in a subfield of theoretical high-energy physics, thus launching arXiv, the first and largest preprint platform. Additional preprint servers have since been implemented in different academic fields, such as BioRxiv (2013, Biology; www.biorxiv.org) and medRxiv (2019, Health Science; www.medrxiv.org). While preprint availability has made valuable research resources accessible to the general public, thus bridging the gap between academic and non-academic audiences, it has also facilitated the spread of unsupported conclusions through various media channels. Issues surrounding the preprint policies of a journal must be addressed, ultimately, by editors and include the acceptance of preprint manuscripts, allowing the citation of preprints, maintaining a double-blind peer review process, changes to the preprint's content and authors' list, scoop priorities, commenting on preprints, and preventing the influence of social media. Editors must be able to deal with these issues adequately, to maintain the scientific integrity of their journal. In this review, the history, current status, and strengths and weaknesses of preprints as well as ongoing concerns regarding journal articles with preprints are discussed. An optimal approach to preprints is suggested for editorial board members, authors, and researchers.
    Keywords:  Peer review; Preprint; Research report; medRxiv
    DOI:  https://doi.org/10.17085/apm.23036
  19. Clin Microbiol Infect. 2023 May 16. pii: S1198-743X(23)00240-9. [Epub ahead of print]
      
    DOI:  https://doi.org/10.1016/j.cmi.2023.05.016
  20. Curr Med Res Opin. 2023 May 15. 1-33
       OBJECTIVE: The Asia-Pacific region (APAC) represents a unique environment for the publication of biomedical research, particularly industry-funded research. Awareness and adoption of international guidelines on ethical publication practices continues to increase across APAC, but the reframing and expansion of many of the recommendations in the Good Publication Practice (GPP) 2022 guidelines versus GPP3 published in 2015 have important implications for publishing industry-funded biomedical research in the region.
    METHODS: This manuscript provides practical guidance for stakeholders in APAC on interpreting and applying the recommendations made in the GPP 2022 guidelines.
    RESULTS: Key focus areas include navigating new opportunities for communicating industry-funded research, such as plain language summaries, social media, and preprints; implementing formal processes to improve the integrity of published research in APAC; and methods of promoting transparency and inclusion when publishing industry-funded research. Key APAC-specific issues, including encore presentations, leadership on publication ethics in the region, access to professional resources, and support for educating regional stakeholders are also discussed.
    CONCLUSIONS: Overall, this manuscript offers a pragmatic guide for stakeholders in industry-sponsored research on applying GPP 2022 in practice with a focus on effectively integrating these guidelines in an APAC context.
    Keywords:  Asia-Pacific; Authorship; Conflict of interest; Disclosures; Ethics; Good Publication Practice; Manuscript development
    DOI:  https://doi.org/10.1080/03007995.2023.2214433
  21. Lakartidningen. 2023 May 15. pii: 23016. [Epub ahead of print]120
      
  22. Farm Hosp. 2023 May 15. pii: S1130-6343(23)00037-5. [Epub ahead of print]
      Pharmacy and pharmaceutical sciences embrace a series of different disciplines. Pharmacy practice has been defined as "the scientific discipline that studies the different aspects of the practice of pharmacy and its impact on health care systems, medicine use, and patient care". Thus, pharmacy practice studies embrace both clinical pharmacy and social pharmacy elements. Like any other scientific discipline, clinical and social pharmacy practice disseminates research findings using scientific journals. Clinical pharmacy and social pharmacy journal editors have a role in promoting the discipline by enhancing the quality of the articles published. As has occurred in other health care areas (i.e., medicine and nursing), a group of clinical and social pharmacy practice journal editors gathered in Granada, Spain to discuss how journals could contribute to strengthening pharmacy practice as a discipline. The result of that meeting was compiled in these Granada Statements, which comprise 18 recommendations gathered into six topics: the appropriate use of terminology, impactful abstracts, the required peer reviews, journal scattering, more effective and wiser use of journal and article performance metrics, and authors' selection of the most appropriate pharmacy practice journal to submit their work. © 2023 The Author(s) Published by Elsevier Inc, Springer Nature, Brazilian Society of Hospital Pharmacy and Health Services, Elsevier Inc, Royal Pharmaceutical Society, Biomedcentral, Sociedad Española de Farmacia Hospitalaria (S.E.F.H), Pharmaceutical Care España Foundation, European Association of Hospital Pharmacists, Faculty of Pharmacy.
    Keywords:  Ciencias farmacéuticas; Clinical Pharmacy journals; Farmacia asistencial; Pharmacy and pharmaceutical sciences; Pharmacy practice; Revistas de farmacia clínica; Revistas de farmacia social; Social Pharmacy journals; Terminology; Terminología
    DOI:  https://doi.org/10.1016/j.farma.2023.04.001
  23. Hypertens Res. 2023 May 15.
      
    Keywords:  Editorial Board; Global initiatives; Special issues
    DOI:  https://doi.org/10.1038/s41440-023-01296-w