bims-skolko Biomed News
on Scholarly communication
Issue of 2023–01–29
23 papers selected by
Thomas Krichel, Open Library Society



  1. Complement Ther Med. 2023 Jan 21. pii: S0965-2299(23)00008-0. [Epub ahead of print] 102921
      Numerous medical articles are commented upon. This suggests that their scientific quality is insufficient. This need not be the case, however: most comments regard the presentation of the data, the conclusions or lacking information in the discussion. Such flaws can commonly be attributed to either too much haste in writing the manuscript, or insufficient time between finishing the manuscript and submission; this last problem seems the most common cause, as it deprives the author from reading his own text critically and with an open mind. The solution for this problem is simple: after having finished a manuscript, it should be laid aside for at least a week, after which the author should read it with the eyes of a reader, not the eyes of an author. Critical, open-minded reading after rest helps increase the quality of the resulting manuscript, just like rest helps a patient during most therapies.
    Keywords:  Editorial activity; Manuscript quality; Manuscript submission
    DOI:  https://doi.org/10.1016/j.ctim.2023.102921
  2. Nature. 2023 Jan;613(7945): 612
      
    Keywords:  Ethics; Machine learning; Publishing; Scientific community
    DOI:  https://doi.org/10.1038/d41586-023-00191-1
  3. PLoS One. 2023 ;18(1): e0280016
      The aim of this study is to reveal a robust correlation between the amount of attention international journalism devotes to scientific papers and the amount of attention scientific journals devote to the respective topics. Using a Mainstream-Media-Score (MSM) ≥ 100 (which we regard as an indicator for news media attention) from the altmetrics provider Altmetric, we link 983 research articles with 185,166 thematically similar articles from the PubMed database (which we use to operationalize attention from scientific journals). The method we use is to test whether there is a concomitant increase in scientific attention after a research article has received popular media coverage. To do so, we compare the quotient of the number of thematically similar articles published in scientific journals during the period before and after the publication of an MSM ≥ 100 article. Our main result shows that in 59 percent of cases, more thematically similar articles were published in scientific journals after a scientific paper received noteworthy news media coverage than before (p < 0.01). In this context, we neither found significant differences between various types of scientific journal (p = 0.3) nor between scientific papers that were originally published in renowned opinion-leading journals or in less renowned, non-opinion-leading journals (p = 0.1). Our findings indicate a robust correlation between the choice of topics in the mass media and in research. However, our study cannot clarify whether this correlation occurs because researchers and/or scientific journals are oriented towards public relevance (publicity effect) or whether the correlation is due to the parallelism of relevance attributions in quality journalism and research (earmark hypothesis). We infer that topics of social relevance are (more) likely to be picked up by popular media as well as by scientific journals. Altogether, our study contributes new empirical findings to the relationship between topic selection in journalism and in research.
    DOI:  https://doi.org/10.1371/journal.pone.0280016
  4. JAMA Netw Open. 2023 Jan 03. 6(1): e2253301
       Importance: Randomized clinical trials (RCTs) on COVID-19 are increasingly being posted as preprints before publication in a scientific, peer-reviewed journal.
    Objective: To assess time to journal publication for COVID-19 RCT preprints and to compare differences between pairs of preprints and corresponding journal articles.
    Evidence Review: This systematic review used a meta-epidemiologic approach to conduct a literature search using the World Health Organization COVID-19 database and Embase to identify preprints published between January 1 and December 31, 2021. This review included RCTs with human participants and research questions regarding the treatment or prevention of COVID-19. For each preprint, a literature search was done to locate the corresponding journal article. Two independent reviewers read the full text, extracted data, and assessed risk of bias using the Cochrane Risk of Bias 2 tool. Time to publication was analyzed using a Cox proportional hazards regression model. Differences between preprint and journal article pairs in terms of outcomes, analyses, results, or conclusions were described. Statistical analysis was performed on October 17, 2022.
    Findings: This study included 152 preprints. As of October 1, 2022, 119 of 152 preprints (78.3%) had been published in journals. The median time to publication was 186 days (range, 17-407 days). In a multivariable model, larger sample size and low risk of bias were associated with journal publication. With a sample size of less than 200 as the reference, sample sizes of 201 to 1000 and greater than 1000 had hazard ratios (HRs) of 1.23 (95% CI, 0.80-1.91) and 2.19 (95% CI, 1.36-3.53) for publication, respectively. With high risk of bias as the reference, medium-risk articles with some concerns for bias had an HR of 1.77 (95% CI, 1.02-3.09); those with a low risk of bias had an HR of 3.01 (95% CI, 1.71-5.30). Of the 119 published preprints, there were differences in terms of outcomes, analyses, results, or conclusions in 65 studies (54.6%). The main conclusion in the preprint contradicted the conclusion in the journal article for 2 studies (1.7%).
    Conclusions and Relevance: These findings suggest that there is a substantial time lag from preprint posting to journal publication. Preprints with smaller sample sizes and high risk of bias were less likely to be published. Finally, although differences in terms of outcomes, analyses, results, or conclusions were observed for preprint and journal article pairs in most studies, the main conclusion remained consistent for the majority of studies.
    DOI:  https://doi.org/10.1001/jamanetworkopen.2022.53301
  5. J Informetr. 2023 Feb;17(1): 101382
      The COVID-19 pandemic and its resultant lockdowns have interrupted the way scientists live and work. This nevertheless caused an unforeseen impact of COVID-19: the pandemic substantially increased editorial speed. Here, we causally identify the impact of the pandemic on the editorial decision time, based on a quasi-experimental regression discontinuity (RD) design that compares (N = 339,199) papers submitted in the lead-up to and aftermath of the COVID-19 pandemic. We find that editors make acceptance decisions significantly quicker after the pandemic, reducing the editorial decision time of revised papers by 8.9 days on average. The pandemic, however, has unequal impacts on editors. The results reveal a larger reduction in editorial decision time for editors of high-tier journals, in the field of social science, or with busy work schedules. Finally, our findings also allude to the potential for the increase of editorial speed, and will stimulate policy changes in scientific enterprises that strive for accelerated publishing.
    Keywords:  COVID-19 pandemic; Editorial decision; Regression discontinuity; Scientific publishing; Work from home
    DOI:  https://doi.org/10.1016/j.joi.2023.101382
  6. JAMA Netw Open. 2023 Jan 03. 6(1): e2253296
       Importance: Although peer review is an important component of publication for new research, the viability of this process has been questioned, particularly with the added stressors of the COVID-19 pandemic.
    Objective: To characterize rates of peer reviewer acceptance of invitations to review manuscripts, reviewer turnaround times, and editor-assessed quality of reviews before and after the start of the COVID-19 pandemic at a large, open-access general medical journal.
    Design, Setting, and Participants: This retrospective, pre-post cohort study examined all research manuscripts submitted to JAMA Network Open between January 1, 2019, and June 29, 2021, either directly or via transfer from other JAMA Network journals, for which at least 1 peer review of manuscript content was solicited. Measures were compared between the period before the World Health Organization declaration of a COVID-19 pandemic on March 11, 2020 (14.3 months), and the period during the pandemic (15.6 months) among all reviewed manuscripts and between pandemic-period manuscripts that did or did not address COVID-19.
    Main Outcomes and Measures: For each reviewed manuscript, the number of invitations sent to reviewers, proportions of reviewers accepting invitations, time in days to return reviews, and editor-assessed quality ratings of reviews were determined.
    Results: In total, the journal sought review for 5013 manuscripts, including 4295 Original Investigations (85.7%) and 718 Research Letters (14.3%); 1860 manuscripts were submitted during the prepandemic period and 3153 during the pandemic period. Comparing the prepandemic with the pandemic period, the mean (SD) number of reviews rated as high quality (very good or excellent) per manuscript increased slightly from 1.3 (0.7) to 1.5 (0.7) (P < .001), and the mean (SD) time for reviewers to return reviews was modestly shorter (from 15.8 [7.6] days to 14.4 [7.0] days; P < .001), a difference that persisted in linear regression models accounting for manuscript type, study design, and whether the manuscript addressed COVID-19.
    Conclusions and Relevance: In this cohort study, the speed and editor-reported quality of peer reviews in an open-access general medical journal improved modestly during the initial year of the pandemic. Additional study will be necessary to understand how the pandemic has affected reviewer burden and fatigue.
    DOI:  https://doi.org/10.1001/jamanetworkopen.2022.53296
  7. Patterns (N Y). 2023 Jan 13. 4(1): 100675
      Interpretation and dissemination-i.e., communication-of data science requires evolving perspectives and strategies to unlock its full potential. Here, some of the problems (and opportunities) are discussed, using three science fiction films as context.
    DOI:  https://doi.org/10.1016/j.patter.2022.100675
  8. Dent Traumatol. 2023 Jan 27.
      Reporting guidelines assist basic scientists, translational healthcare researchers and clinicians to publish manuscripts of the highest standard by improving the accuracy, transparency, and completeness of the publications they submit to journals. This paper provides an overview of reporting guidelines relevant for the specialty of dental traumatology and discusses their application, significance, and potential impact. The Preferred Reporting Items for study Designs in Endodontology (PRIDE) suite of reporting guidelines includes a range of study designs that can be used within the broad field of Endodontics but they are also applicable to dental traumatology and other dental disciplines (Preferred Reporting Items for Case reports in Endodontics [PRICE] 2020, Preferred Reporting Items for RAndomized Trials in Endodontics [PRIRATE] 2020; Preferred Reporting Items for Animal Studies in Endodontology [PRIASE] 2021; Preferred Reporting Items for Laboratory studies in Endodontology [PRILE] 2021, Preferred Reporting items for OBservational studies in Endodontics [PROBE] 2023). The PRIDE guidelines were developed by an extensive network of globally-renowned academics, researchers and expert clinicians working within dentistry using an accepted and validated consensus methodology. The aim of the PRIDE guidelines is to improve the overall quality of manuscripts describing case reports, randomized trials, animal research, laboratory studies and observational studies. Although, attention to reporting guidelines adds a degree of complexity when writing reports, such guidelines provide a template for authors to develop standardised manuscripts of the highest quality, which will allow colleagues, readers and the wider public to have confidence that their findings are valid and robust. They also provide evidence to editors that manuscripts submitted to journals comply with the highest global standards of reporting within their respective discipline. Endorsement of the PRIDE guidelines by editors will lead to improvements in the reporting quality of manuscripts submitted to their journals.
    Keywords:  Dental traumatology; reporting guidelines; research
    DOI:  https://doi.org/10.1111/edt.12824
  9. Nature. 2023 Jan 25.
      
    Keywords:  Authorship; Publishing; Research data; Scientific community
    DOI:  https://doi.org/10.1038/d41586-023-00183-1
  10. Wilderness Environ Med. 2023 Jan 19. pii: S1080-6032(22)00161-2. [Epub ahead of print]
      Scientific writing relies on an extensive array of written and unwritten rules to balance clarity, relevance, and economy. Careful development can strengthen each element of original research manuscripts. Some strategies are straightforward, including general organization and compliance with submission guidelines. Some aspects are more controversial, such as the subtleties of organizational structure, including claims of novelty, and presentation of limitations in the text. Manuscript crafting is usually improved through mindfulness of economy in presentation and objective restraint in interpretations. Submission to credible peer-reviewed journals can help refine the product. Practical guidelines can help develop reports that are readable, objective, and informative.
    Keywords:  authorship; communication; guidelines; publication; science in literature; writing
    DOI:  https://doi.org/10.1016/j.wem.2022.09.005
  11. J Cell Sci. 2023 Jan 15. pii: jcs260914. [Epub ahead of print]136(2):
      
    DOI:  https://doi.org/10.1242/jcs.260914
  12. Front Psychol. 2022 ;13 1076340
      The use of social media for the collaboration of academics has been increasing in recent years. However, there are no reported studies on using Messenger as a collaborative platform to write and publish journal articles and apply for research and development grants. We use an auto-ethnography to reflect on our experiences over the last 3 years, using Messenger as our medium for our ongoing collaborative research activities. Our results highlight the benefits and challenges of using social media for this engagement. The capabilities of Messenger, as opposed to traditional correspondence through email, have paved our preference to use this platform. We can engage in dynamic collaboration and focussed discussion with less formal communication conventions through Messenger. In addition, the extra features, including easy phone calls, sending links, resources and screenshots, and using emojis and stickers for more socially cohesive interactions, are valued features of Messenger. We used the activity theory to highlight the interrelationships of factors (i.e., personal, social-emotional, structural, technological, and organisational) contributing to the success of collaborative academic activities, including the successful publication of journal articles and securing research and development grants. The findings of our study significantly contribute to understanding how social media can be effectively used for academic engagement.
    Keywords:  Messenger; academic work; collaboration; publishing; social media
    DOI:  https://doi.org/10.3389/fpsyg.2022.1076340
  13. Sci Data. 2023 Jan 26. 10(1): 58
      We present the Webis-STEREO-21 dataset, a massive collection of Scientific Text Reuse in Open-access publications. It contains 91 million cases of reused text passages found in 4.2 million unique open-access publications. Cases range from overlap of as few as eight words to near-duplicate publications and include a variety of reuse types, ranging from boilerplate text to verbatim copying to quotations and paraphrases. Featuring a high coverage of scientific disciplines and varieties of reuse, as well as comprehensive metadata to contextualize each case, our dataset addresses the most salient shortcomings of previous ones on scientific writing. The Webis-STEREO-21 does not indicate if a reuse case is legitimate or not, as its focus is on the general study of text reuse in science, which is legitimate in the vast majority of cases. It allows for tackling a wide range of research questions from different scientific backgrounds, facilitating both qualitative and quantitative analysis of the phenomenon as well as a first-time grounding on the base rate of text reuse in scientific publications.
    DOI:  https://doi.org/10.1038/s41597-022-01908-z
  14. PLoS Biol. 2023 Jan 27. 21(1): e3002011
    PLOS Biology staff editors
      PLOS began publishing influential open access science in 2003. As PLOS Biology enters its third decade, we reflect on our mission, what has changed, what remains to be done and our wishes for the future.
    DOI:  https://doi.org/10.1371/journal.pbio.3002011
  15. J Consult Clin Psychol. 2022 Dec;90(12): 899-900
      In this editorial, Davila reflects on the principles and goals that guided her as an editor and how they have shaped the direction of the journal these past 6 years. She discusses in detail the topics of stability, growth, and inclusiveness. (PsycInfo Database Record (c) 2023 APA, all rights reserved).
    DOI:  https://doi.org/10.1037/ccp0000791