bims-skolko Biomed News
on Scholarly communication
Issue of 2022–09–25
27 papers selected by
Thomas Krichel, Open Library Society



  1. Res Integr Peer Rev. 2022 Sep 19. 7(1): 6
    RISRS Team
       BACKGROUND: Retraction is a mechanism for alerting readers to unreliable material and other problems in the published scientific and scholarly record. Retracted publications generally remain visible and searchable, but the intention of retraction is to mark them as "removed" from the citable record of scholarship. However, in practice, some retracted articles continue to be treated by researchers and the public as valid content as they are often unaware of the retraction. Research over the past decade has identified a number of factors contributing to the unintentional spread of retracted research. The goal of the Reducing the Inadvertent Spread of Retracted Science: Shaping a Research and Implementation Agenda (RISRS) project was to develop an actionable agenda for reducing the inadvertent spread of retracted science. This included identifying how retraction status could be more thoroughly disseminated, and determining what actions are feasible and relevant for particular stakeholders who play a role in the distribution of knowledge.
    METHODS: These recommendations were developed as part of a year-long process that included a scoping review of empirical literature and successive rounds of stakeholder consultation, culminating in a three-part online workshop that brought together a diverse body of 65 stakeholders in October-November 2020 to engage in collaborative problem solving and dialogue. Stakeholders held roles such as publishers, editors, researchers, librarians, standards developers, funding program officers, and technologists and worked for institutions such as universities, governmental agencies, funding organizations, publishing houses, libraries, standards organizations, and technology providers. Workshop discussions were seeded by materials derived from stakeholder interviews (N = 47) and short original discussion pieces contributed by stakeholders. The online workshop resulted in a set of recommendations to address the complexities of retracted research throughout the scholarly communications ecosystem.
    RESULTS: The RISRS recommendations are: (1) Develop a systematic cross-industry approach to ensure the public availability of consistent, standardized, interoperable, and timely information about retractions; (2) Recommend a taxonomy of retraction categories/classifications and corresponding retraction metadata that can be adopted by all stakeholders; (3) Develop best practices for coordinating the retraction process to enable timely, fair, unbiased outcomes; and (4) Educate stakeholders about pre- and post-publication stewardship, including retraction and correction of the scholarly record.
    CONCLUSIONS: Our stakeholder engagement study led to 4 recommendations to address inadvertent citation of retracted research, and formation of a working group to develop the Communication of Retractions, Removals, and Expressions of Concern (CORREC) Recommended Practice. Further work will be needed to determine how well retractions are currently documented, how retraction of code and datasets impacts related publications, and to identify if retraction metadata (fails to) propagate. Outcomes of all this work should lead to ensuring retracted papers are never cited without awareness of the retraction, and that, in public fora outside of science, retracted papers are not treated as valid scientific outputs.
    Keywords:  Citation; Citation of retracted research; Publication ethics; Retraction; Spread of retracted research
    DOI:  https://doi.org/10.1186/s41073-022-00125-x
  2. Front Endocrinol (Lausanne). 2022 ;13 998269
      
    Keywords:  COVID; endocrinology; research activity; scientific journals; submissions rates
    DOI:  https://doi.org/10.3389/fendo.2022.998269
  3. Nat Commun. 2022 Sep 20. 13(1): 5419
      
    DOI:  https://doi.org/10.1038/s41467-022-33051-z
  4. Postgrad Med J. 2022 Sep 19. pii: pmj-2022-142046. [Epub ahead of print]
      
    Keywords:  EDUCATION AND TRAINING; ETHICS; STATISTICS & RESEARCH METHODS
    DOI:  https://doi.org/10.1136/pmj-2022-142046
  5. R Soc Open Sci. 2022 Sep;9(9): 210681
      Improving the methodological rigour and the quality of data analysis in manuscripts submitted to journals is key to ensure the validity of scientific claims. However, there is scant knowledge of how manuscripts change throughout the review process in academic journals. Here, we examined 27 467 manuscripts submitted to four journals from the Royal Society (2006-2017) and analysed the effect of peer review on the amount of statistical content of manuscripts, i.e. one of the most important aspects to assess the methodological rigour of manuscripts. We found that manuscripts with both initial low or high levels of statistical content increased their statistical content during peer review. The availability of guidelines on statistics in the review forms of journals was associated with an initial similarity of statistical content of manuscripts but did not have any relevant implications on manuscript change during peer review. We found that when reports were more concentrated on statistical content, there was a higher probability that these manuscripts were eventually rejected by editors.
    Keywords:  academic journals; manuscripts; peer review; reviewers; statistics
    DOI:  https://doi.org/10.1098/rsos.210681
  6. Mol Biol Cell. 2022 Oct 01. 33(12): pe6
      Although the process of publishing a scientific paper has gotten simpler, it is increasingly difficult to publish a paper in high profile journals. We have analyzed the publishing data in the cell biology field and found several alarming trends developing over the last two decades. There is an emerging divide between scientist-run journals and professional-run high profile journals. How did this happen? What should we do? The core issue is whether the current standard for high profile journals hurts rather than helps the scientific discovery process. In this regard, we suggest that the editors and scientists should direct their focus on the potential impact and rigor of the work instead of the "perfection" or "completeness" of the study.
    DOI:  https://doi.org/10.1091/mbc.E22-04-0140
  7. J Visc Surg. 2022 Sep 14. pii: S1878-7886(22)00120-5. [Epub ahead of print]
      
    DOI:  https://doi.org/10.1016/j.jviscsurg.2022.08.003
  8. Open Forum Infect Dis. 2022 Sep;9(9): ofac415
       Background: The landscape of infectious diseases research by interprofessional teams continues to change in both scope and engagement. Limited information exists regarding publication metrics and factors associated with publication of abstracts presented at professional infectious diseases meetings.
    Methods: This was a retrospective, observational study evaluating abstracts presented at IDWeek in 2017 and 2018. The primary endpoint was the proportion of abstracts that were subsequently published in peer-reviewed journals. Factors associated with publication were evaluated, and a description of publication metrics was reported.
    Results: Of the 887 abstracts analyzed from the IDWeek meetings, 236 (26.6%) were published. Significantly more abstracts were published if they were presented as a platform presentation versus poster presentation (35% vs 21%, P < .001). Inclusion of a PhD author significantly increased the likelihood of publication (P = .0014). Prospective studies, greater number of authors, and greater number of study subjects were more common among published abstracts. Median time to publication was 10.9 months, and the majority were published in infectious diseases journals, with an overall average impact factor of 7.7 across all journals.
    Conclusions: Abstracts from IDWeek presented as oral platforms and those including a PhD author were more likely to be published. Large, diverse authorship teams were common among published abstracts. The high quality of resulting manuscripts is evident by the destination journals and their respective impact factors. These data may be used to inform and motivate clinicians and trainees engaging in infectious diseases-related research.
    Keywords:  IDSA; IDWeek; abstracts; academician; publications; research
    DOI:  https://doi.org/10.1093/ofid/ofac415
  9. Kidney Int. 2022 Oct;pii: S0085-2538(22)00632-9. [Epub ahead of print]102(4): 683-686
      Kerr et al. interpret the perspectives of First Nations People striving for kidney health within the United States, Canada, Aotearoa (New Zealand), and Australia. The urgency for First Nations Peoples' perspectives and leadership in kidney health care, research, quality reporting, and publishing was confirmed. Advancing this internationally is within scope of high-impact journals, such as Kidney International. Tracking Sovereignty is a proposed framework supporting First Nation Peoples' representation and leadership within journal submission and publication processes.
    DOI:  https://doi.org/10.1016/j.kint.2022.08.011
  10. BMC Res Notes. 2022 Sep 20. 15(1): 302
      Proponents of open science often refer to issues pertaining to research integrity and vice versa. In this commentary, we argue that concepts such as responsible research practices, transparency, and open science are connected to one another, but that they each have a different focus. We argue that responsible research practices focus more on the rigorous conduct of research, transparency focuses predominantly on the complete reporting of research, and open science's core focus is mostly about dissemination of research. Doing justice to these concepts requires action from researchers and research institutions to make research with integrity possible, easy, normative, and rewarding. For each of these levels from the Center for Open Science pyramid of behaviour change, we provide suggestions on what researchers and research institutions can do to promote a culture of research integrity. We close with a brief reflection on initiatives by other research communities and stakeholders and make a call to those working in the fields of research integrity and open science to pay closer attention to one other's work.
    Keywords:  Open science; Research integrity; Responsible research practices; Transparency
    DOI:  https://doi.org/10.1186/s13104-022-06169-y
  11. J Prof Nurs. 2022 Sep-Oct;42:pii: S8755-7223(22)00095-3. [Epub ahead of print]42 106-110
      Dissemination of nursing scholarship is of paramount importance as nurses continue to advance the profession. In academia, faculty and students frequently collaborate on scholarship leading to opportunities for publication. This paper explores the challenges and opportunities accompanying co-authorship between faculty and students. While several professional disciplines and organizations formulated guidelines and procedures specific to authorship practices between faculty and students, literature specific to authorship practices among nursing faculty and students is lacking. This paper explores the opportunities and challenges with faculty-student authorship and outlines current practices among other disciplines to aid in providing recommendations for faculty-student authorship collaboration in nursing. Future research on common practices for nursing faculty-student authorship needs to be explored.
    Keywords:  Authorship; Faculty-student authorship; Faculty-student collaborations; Graduate students; Joint publishing; Publication ethics
    DOI:  https://doi.org/10.1016/j.profnurs.2022.06.009
  12. Account Res. 2022 Sep 19.
      In this paper, we introduce the concepts of sensitivity and specificity to mathematically describe the accuracy of the peer review process. Sensitivity refers to the probability that the final decision for a manuscript would be acceptance, provided the manuscript meets the journal standards required for publication (i.e., true positive rate). Specificity refers to the probability that the final decision would be rejection, provided the work does not meet the standards required for publication (i.e., true negative rate). Therefore, in the peer review process, sensitivity measures the ability to correctly accept manuscripts that meet the required standards (true positives) and specificity measures the ability to correctly reject manuscripts that do not meet those quality standards required for publication (true negatives). Sensitivity and specificity values can inform the editor under what conditions the outcome of a peer review process becomes more precise and, therefore, if this does not occur, when the editor must improve the analysis involved in processing the information received from reviewers' reports. Sensitivity and specificity understood in this way can promote the ethical conduct of peer review processes and improve the validity of manuscript editorial decisions.
    Keywords:  Bayesian Inference; Mutual Information; Peer Review; Sensitivity; Specificity
    DOI:  https://doi.org/10.1080/08989621.2022.2122817
  13. J Med Imaging Radiat Sci. 2022 Sep 17. pii: S1939-8654(22)00352-6. [Epub ahead of print]
      
    Keywords:  Academic support; Academic writing; Manuscript preparation; Publication
    DOI:  https://doi.org/10.1016/j.jmir.2022.09.001
  14. Stud Hist Philos Sci. 2022 Sep 19. pii: S0039-3681(22)00124-8. [Epub ahead of print]96 10-17
      There is mounting evidence that a large portion of experimental results cannot be replicated, leading many to believe that science is now in the throes of a replicability crisis. In response, there have been calls to reduce publication bias against negative results because of the effect that publication bias has on the publication record. Others, however, argue that publication bias need not be detrimental to scientific progress. Here, we propose a novel mechanism by dint of which reducing publication bias can benefit science regardless of the effect that publication bias has on the publication record. To do so, we introduce a series of increasingly complex mathematical models. Our models represent a scientific community consisting of discovery researchers who test novel hypotheses, and confirmation researchers who test known hypotheses. Results show that reducing publication bias can have the surprising consequence of increasing the share of confirmation researchers who conduct replications. When a large share of scientists conduct confirmation research, scientists have an incentive to conduct high-quality research as others are likely to check their findings. Our models therefore suggest an underappreciated reasons why reducing publication bias might benefit science.
    Keywords:  Credit economy; Cultural evolution; Discovery and confirmation; Publication bias; Replicability crisis; Scientific communities
    DOI:  https://doi.org/10.1016/j.shpsa.2022.08.010
  15. Nursing. 2022 Oct 01. 52(10): 36-39
       ABSTRACT: This article guides nurses through the journal publication process, specifically how to choose a topic, send a query email, establish authorship, avoid predatory journals, and successfully advance on the publication path.
    DOI:  https://doi.org/10.1097/01.NURSE.0000872468.88171.f9
  16. J Pediatr. 2022 Sep;pii: S0022-3476(22)00615-1. [Epub ahead of print]248 38
      
    DOI:  https://doi.org/10.1016/j.jpeds.2022.06.035
  17. J Prosthet Dent. 2022 Sep 16. pii: S0022-3913(22)00517-0. [Epub ahead of print]
      
    DOI:  https://doi.org/10.1016/j.prosdent.2022.08.021