bims-nocaut Biomed News
on Non-canonical autophagy
Issue of 2026–04–05
three papers selected by
Quentin Frenger, University of Strasbourg



  1. Curr Opin Cell Biol. 2026 Mar 28. pii: S0955-0674(26)00020-7. [Epub ahead of print]100 102632
      Unconventional protein secretion (UcPS) has emerged as a major route for exporting proteins that lack signal peptides and cannot enter the classical ER-Golgi pathway. UcPS comprises mechanistically diverse pathways involving either direct membrane translocation or vesicular intermediates. Direct export is exemplified by PI(4,5)P2-dependent FGF2 pore formation and gasdermin pores that release cytokines during pyroptosis. Vesicle-based routes include TMED-mediated translocation at the ER-Golgi intermediate compartment (ERGIC) feeding secretory autophagy carriers, GRASP-dependent CUPS that enable starvation-induced Golgi-bypassing secretion, and MAPS-mediated export of misfolded proteins via late endosomes. These pathways reveal a shared principle: cells deploy multiple, context-specific mechanisms to move proteins across membranes without classical signal peptides.
    DOI:  https://doi.org/10.1016/j.ceb.2026.102632
  2. Autophagy. 2026 Mar 30. 1-3
      TFEB (transcription factor EB) regulates the expression of autophagy and lysosomal genes, is activated by various cellular stresses, and plays a key role in maintaining cellular homeostasis. Recent work demonstrates that TFEB is activated during lysosomal damage through two distinct mechanisms: ATG conjugation-dependent and -independent. TFEB activation proceeds sequentially through two modes. In the early ATG conjugation-independent mode (Mode I), APEX1 interacts with TFEB in the nucleus, maintaining its transcriptional activity and protein stability. In the later ATG conjugation-dependent mode (Mode II), CCT7 and TRIP6 translocate to lysosomes and interact with TFEB, modulating its phosphorylation and nuclear localization. Moreover, TFEB regulation induced by other cellular stresses-such as oxidative stress, proteasome inhibition, mitochondrial damage, and DNA damage-also involves either Mode I or Mode II. Our findings provide new insights into a unified understanding of TFEB regulation under diverse cellular stress conditions.
    Keywords:  Damage; TFEB; lysosome; mitochondria; organelle
    DOI:  https://doi.org/10.1080/15548627.2026.2642336
  3. J Clin Invest. 2026 Apr 01. pii: e199845. [Epub ahead of print]136(7):
      Lysosomes function as metabolic control centers that integrate degradation, nutrient sensing, and stress signaling. In neurons, which must maintain proteostasis and energetic balance throughout life, lysosomal homeostasis determines cellular resilience. Emerging evidence identifies lysosomal injury and defective repair as common denominators across neurodegenerative diseases. Damage to the lysosomal membrane caused by oxidative stress, lipid imbalance, or genetic mutations triggers a hierarchical quality control cascade. Early lesions recruit the endosomal sorting complex required for transport (ESCRT) machinery for mechanical resealing, while larger ruptures activate lipid-centered recovery modules. When repair fails, lysophagy eliminates irreparable organelles and a TFEB-dependent transcriptional program regenerates the lysosomal pool. These tightly coupled responses safeguard neurons from catastrophic proteostatic collapse. Their impairment, through mutations in lysosomal proteins, or through aging, produces the lysosomal fragility that underlies Alzheimer disease, Parkinson disease, amyotrophic lateral sclerosis/frontotemporal dementia, and Huntington disease. Crosstalk between lysosomes, mitochondria, and ER integrates local damage with systemic metabolic adaptation, while dysregulated lysosomal exocytosis and inflammation propagate pathology. Understanding how ESCRT complexes, lipid transport, and transcriptional renewal cooperate to preserve lysosomal integrity reveals unifying principles of neurodegeneration and defines molecular targets for intervention. Restoring lysosomal repair and renewal offers a rational path toward preventing neuronal loss.
    DOI:  https://doi.org/10.1172/JCI199845