J Biol Chem. 2020 Oct 07. pii: jbc.RA120.014253. [Epub ahead of print]
Stop codon readthrough (SCR) is a process of continuation of translation beyond a stop codon. This phenomenon, which occurs only in certain mRNAs under specific conditions, leads to a longer isoform with properties different from that of the canonical isoform. MTCH2, which encodes a mitochondrial protein that regulates mitochondrial metabolism, was selected as a potential readthrough candidate based on evolutionary conservation observed in the proximal region of its 3'UTR. Here, we demonstrate translational readthrough across two evolutionarily conserved, in-frame stop codons of MTCH2 using luminescence- and fluorescence-based assays, and by analyzing ribosome-profiling and mass-spectrometry data. This phenomenon generates two isoforms, MTCH2x and MTCH2xx (single- and double-SCR products, respectively), in addition to the canonical isoform MTCH2, from the same mRNA. Our experiments revealed that a cis-acting 12-nucleotide sequence in the proximal 3'UTR of MTCH2 is the necessary signal for SCR. Functional characterization showed that MTCH2 and MTCH2x were localized to mitochondria with a long half-life (> 36 h). However, MTCH2xx was found predominantly in the cytoplasm. This mislocalization and its unique C-terminus led to increased degradation, as shown by greatly reduced half-life (< 1 h). MTCH2 readthrough-deficient cells, generated using CRISPR-Cas9, showed increased MTCH2 expression and, consistent with this, decreased mitochondrial membrane potential. Thus, double-SCR of MTCH2 regulates its own expression levels contributing towards the maintenance of normal mitochondrial membrane potential.
Keywords: mRNA; mitochondrial membrane potential; protein degradation; ribosome; translation control