bims-metlip Biomed News
on Methods and protocols in metabolomics and lipidomics
Issue of 2025–09–28
fifty-six papers selected by
Sofia Costa, Matterworks



  1. Se Pu. 2025 Oct;43(10): 1162-1169
      Tetrodotoxin (TTX) is a powerful small-molecule neurotoxin primarily produced by specific marine endosymbiotic bacteria and can be enriched during symbiosis with aquatic organisms such as pufferfish, gastropods, and blue-ringed octopuses. TTX prevents sodium ions from entering nerve cells, which affects neuromuscular conduction and leads to progressive paralysis and even death due to respiratory failure. Poisoning ascribable to the ingestion of TTX-containing seafood has occurred occasionally in some coastal areas of China. The early identification of toxins and the administration of symptomatic detoxification therapies can improve the resuscitation success rates of poisoned patients. The concentration of TTX in clinical biological samples reflects the degree of patient poisoning and their prognosis. A method was established for the determination of the TTX in poisoned biological samples by two-dimensional liquid chromatography-tandem mass spectrometry (2D-LC-MS/MS). A human plasma or urine sample (100 μL) was accurately pipetted into a 2-mL centrifuge tube, sequentially added a 10 mg/L kasugamycin solution (10 μL; internal standard), ultrapure water (150 μL), and 0.5% (v/v) acetic acid in acetonitrile (250 μL) as the extraction solvent, after which the mixture was subjected to vortex mixing at 2 200 r/min for 10 min and centrifugation for 10 min at 15 000 r/min and 4 ℃. The supernatant was roughly separated using a first-dimensional reverse-phase C18 column (Hypersil Gold C18, 50 mm×2.1 mm, 1.9 μm). The target fraction was then transferred to a hydrophilic liquid chromatography column (Acquity UPLC BEH Amide, 150 mm×3.0 mm, 1.7 μm) via a six-way switching valve for second-dimensional separation and analysis using positive electrospray ionization and selected reaction monitoring (SRM) modes. Kasugamycin served as the internal standard for TTX quantitation, using matrix-matched calibration combined with the internal standard method. TTX exhibited good linearity in the 0.2-40.0 μg/L range (equivalent to 1.0-200.0 μg/L in biological samples), with a correlation coefficient exceeding 0.999 4. The TTX in human plasma and urine samples exhibited matrix effects of 80.9% and 98.9%, respectively, with LODs and LOQs of 0.3 and 1.0 μg/L, respectively, determined for both sample types, based on three- and ten-times signal-to-noise ratios, respectively. The TTX in human plasma and urine exhibited intra-day recoveries of 84.4%-98.4% and 84.4%-96.9%, respectively, with inter-day recoveries of 87.7%-96.2% and 84.8%-95.7%, respectively, at spiked levels of 2.0, 10.0, 50.0, and 200.0 μg/L. Intra-day relative standard deviations (RSDs) of 3.2%-7.2% and 2.9%-5.7% were recorded for TTX in human plasma and urine, respectively, with inter-day RSDs of 2.3%-3.2% and 1.0%-7.5%, respectively. The intra-day and inter-day RSDs of both sample types were determined to be lower than 7.5%. The method is accurate, fast, avoids complicated pretreatment steps, and was successfully used to detect TTX in food-poisoning scenarios.
    Keywords:  biological samples; mass spectrometry (MS); plasma; poisoning; tetrodotoxin (TTX); two-dimensional liquid chromatography (2D-LC); urine
    DOI:  https://doi.org/10.3724/SP.J.1123.2024.11026
  2. Se Pu. 2025 Oct;43(10): 1089-1099
      Bisphenols (BPs), which include bisphenol A and its analogs (such as bisphenol S, bisphenol AF, and bisphenol B), are chemical substances that are synthesized artificially. BPs are used in epoxy resins and polycarbonate plastics and are widely found in food packaging and beverage containers. BPs are endocrine disruptors; hence, they can disrupt the natural hormonal activities of the human body, impact the neurological development of children, and affect intestinal microbial communities in the body, leading to obesity. Consequently, BPs pose threats to human health. The prepared dishes are usually using plastic packaging (containers, films, tubes, etc.); consequently, BPs migrate from the packaging material to the food in the container is hot topic of wide concern. To address this issue, an efficient, simple and accurate method for the simultaneous determination of the 15 BPs content levels in prepared dishes using ultra performance liquid chromatography-tandem mass spectrometry (UPLC-MS/MS) was developed. The effects of the extraction solvent and its proportion, the amount of weighed matrix, and type of purifying agent on the responses and recoveries of the 15 BPs were investigated under the optimized MS conditions with the aim of determining the optimal sample-preparation conditions. The prepared dishes samples were crushed and evenly mixed, after which an internal standard solution containing a mixture of bisphenols was added and dispersed using 2.0 mL of ultrapure water. Acetonitrile (8.0 mL) was subsequently added, and the sample was extracted using vortex ultrasonication, centrifuged at 10 000 r/min for 10 min, and a 3.0-mL aliquot of the centrifuged supernatant was cleaned using a Captiva EMR-Lipid clean-up column, after which the purified liquid was subjected to UPLC-MS/MS. Analyses of response values, separation effects, and chromatographic peak shapes revealed that the Waters ACQUITY HSS T3 column (100 mm×2.1 mm, 1.8 μm) optimally separated the 15 target BPs at a column temperature of 40 ℃, a flow rate of 0.2 mL/min, and an injection volume of 2.0 μL. A Waters ACQUITY BEH C18 column (50 mm×2.1 mm, 1.7 μm) was used to trap and eliminate interference from exogenous BPs in the piping components. Gradient elution was performed using methanol and 0.01% (v/v) aqueous ammonia as mobile phases. Data were collected in electrospray negative-ion (ESI-) and multiple reaction monitoring (MRM) modes, and quantified using the isotope internal standard method. The 15 BPs exhibited good linear relationships within their respective linear ranges under the optimized experimental conditions, with correlation coefficients (R2) greater than 0.999 0. The limits of detection (LODs) and limits of quantification (LOQs) were in the range of 0.01-0.45 μg/kg and 0.03-1.50 μg/kg, respectively. The recoveries and relative standard deviations (RSDs) of the 15 BPs in matrix sample of prepared dishes at low, medium, and high spiked levels were 70.9%‒105.8% and 0.6%‒9.1% (n=6), respectively. The established method was used for the analytical determination of the 15 BPs in 30 prepared dishes samples, bisphenol A, bisphenol B, bisphenol C, bisphenol G, bisphenol S and bisphenol AF were detected in 11 samples, with bisphenol A exhibiting the highest detection rate of 16.7%, followed by bisphenol C, bisphenol G, bisphenol B, bisphenol AF, and bisphenol S, with values of 10.0%, 10.0%, 6.67%, 6.67% and 3.33%, respectively. The median contents of bisphenol G, bisphenol B, bisphenol A, bisphenol C, bisphenol S, and bisphenol AF were 4.15, 3.25, 2.68, 2.16, 1.49, and 0.47 μg/kg, respectively, with two BPs detected in 16.7% of the samples. The developed method involves simple pretreatment, is highly precise and sensitive, and is capable of accurately and qualitatively analyzing the 15 BPs in prepared dishes.
    Keywords:  bisphenols (BPs); prepared dishes; solid phase extraction; ultra performance liquid chromatography-tandem mass spectrometry (UPLC-MS/MS)
    DOI:  https://doi.org/10.3724/SP.J.1123.2024.11014
  3. Biomed Chromatogr. 2025 Nov;39(11): e70222
      Colchicine is a naturally occurring alkaloid primarily derived from plants of the Colchicum genus, which is used to treat gout and serve as a frontline therapy for various inflammatory conditions, including familial Mediterranean fever. Although it is not recommended for routine therapeutic drug monitoring, there are situations where it may be beneficial, such as in dose adjustments. The present study introduces an LC-MS/MS method for quantifying colchicine in human plasma. A one-step extraction procedure employing an Ostro plate was applied, and the extracts were analyzed using gradient elution followed by detection on a mass spectrometer in multiple reaction monitoring mode. Our method offers several advantages, including a low sample volume and a run time of only 3 min. It demonstrates sufficient linearity to quantify low and high concentrations of colchicine in human plasma samples. The method was successfully validated in accordance with the ICH guideline M10 on bioanalytical method validation, covering selectivity, linearity, limit of quantification, accuracy, precision, dilution integrity, carry-over effect, matrix effects, extraction recovery, and stability over a concentration range of 0.05-100 ng/mL. The fully developed and validated method was applied to determine colchicine in plasma samples from patients diagnosed with familial Mediterranean fever.
    Keywords:  colchicine; familial Mediterranean fever; liquid chromatography–tandem mass spectrometry; phospholipid removal; therapeutic drug monitoring
    DOI:  https://doi.org/10.1002/bmc.70222
  4. Anal Chem. 2025 Sep 22.
      We present UCL-MetIsoLib, a publicly accessible high-resolution tandem mass spectrometry (HRMS/MS) library developed for HILIC-based, ion-pairing-free, isomer-resolved metabolomics using a bioinert UHPLC system and the Acquity Premier BEH Amide column. The platform integrates two complementary methods operating under distinct chromatographic conditions (pH 3.5, ESI+; pH 11.0, ESI-), enabling broad metabolic coverage. A total of 334 metabolites are annotated in the library structure, with thiol derivatization incorporated into the extraction protocol to mitigate redox-driven artifacts. Metabolite identification is supported by 245 authentic reference standards and curated according to MSI Level 1 and Level 2 criteria. Validation followed FDA guidelines for bioanalytical method validation across five biological matrices─urine, plasma, tissues, cells, and patient-derived colorectal organoids. The method demonstrated high precision (<15% RSD intra/inter-day) and recovery (85-115% across all QC levels). To demonstrate biological applicability, UCL-MetIsoLib was applied to a case study comparing healthy and colorectal cancer-derived organoids. The method enabled confident annotation of metabolite isomers, including key glycolytic intermediates such as DHAP and GA3P, as well as sugar phosphates from the glycolysis and pentose phosphate pathways. Metabolic alterations were observed in tumor organoids, including accumulation of nucleotide derivatives and shifts in central carbon metabolism. The library is constantly under expansion and is freely available in its latest version at: https://github.com/kserafimov10/UCLMetIsoLib.
    DOI:  https://doi.org/10.1021/acs.analchem.5c03390
  5. Anal Bioanal Chem. 2025 Sep 24.
      This study introduces an analytical method for the determination of endocrine-disrupting chemicals (EDCs) in human urine samples, employing QuEChERS as a clean-up step for the first time in this biological matrix. Sample preparation was rigorously optimized through the evaluation of sample and final dilution volumes, balancing the need to reduce matrix interference without sacrificing sensitivity. High-performance liquid chromatography coupled with a triple quadrupole-time-of-flight mass spectrometer (HPLC-QTOF) was employed, enabling the detection of 13 target analytes (five OPEs, five phthalates, and three parabens' metabolites). Chromatographic separation was achieved in 16 min, and mass spectrometry parameters were fine-tuned to maximize signal sensitivity. The method was validated by assessing parameters such as selectivity, linearity, precision, accuracy, and sensitivity. Linearity of response was demonstrated for all of the compounds (r2 > 0.99), with method detection limits of 0.01-0.33 ng/mL and limits of quantification of 0.03-1.08 ng/mL. Accuracy ranged from 67 to 99% and inter- and intra-day precision were under 20%, for the majority of the analytes. The validated method was then applied to 39 human urine samples, confirming its reliability and practical utility for monitoring EDC exposure in urban populations. The highest concentrations were found in parabens, followed by phthalates and finally OPEs, with median values of 117, 43.5, and 25.4 ng/g of creatinine, respectively. The detection of all three EDC groups in 100% of the samples underscores the importance of this comprehensive analytical approach being capable of simultaneously assessing these contaminants in human biomonitoring studies.
    Keywords:  Human biomonitoring; Metabolites; Organophosphate esters; Parabens; Phthalates; Target analysis
    DOI:  https://doi.org/10.1007/s00216-025-06099-1
  6. Rapid Commun Mass Spectrom. 2025 ;39(24): e10145
       RATIONALE: Classifying specialized metabolites in untargeted metabolomics remains a major challenge, particularly when relying solely on high-resolution mass spectrometry (HRMS) data at the MS1 level. Traditional approaches using Van Krevelen diagrams often lack sufficient resolution to distinguish structurally similar metabolite classes.
    METHODS: We developed a chemoinformatic framework that combines Van Krevelen analysis (H/C vs. O/C) with double bond equivalent (DBE) calculations to refine metabolite class annotation at Level 3 of the Metabolomics Standards Initiative (MSI). Molecular formulas were retrieved from curated structure databases and natural product repositories, and DBE values were used to refine structural classification. A dataset of over 600 curated molecular formulas representing phenolics, alkaloids, and isoprenoids was analyzed to define class-specific patterns.
    RESULTS: The combined use of DBE and Van Krevelen plots enabled improved discrimination between overlapping metabolite classes, including flavonoids, phenolic acids, coumarins, and tannins. Our framework revealed structural trends associated with aromaticity and unsaturation that are not captured by conventional MS1-based tools. It outperforms existing Level 3 annotation strategies that rely on in silico MS/MS fragmentation or substructure matching. A case study using Eugenia jambolana fruit extract validated the method, revealing dominant classes such as flavonoids, phenolic acids, and tannins using only MS1 data.
    CONCLUSIONS: This is the first scalable framework to annotate specialized metabolites from MS1 data alone using integrated elemental ratios and structural descriptors. It enhances the annotation confidence for untargeted metabolomics, especially in complex, undercharacterized plant matrices, without requiring MS2 fragmentation.
    Keywords:  Van Krevelen diagram; double bond equivalent (DBE); high‐resolution mass spectrometry (HRMS); natural products; untargeted metabolomics
    DOI:  https://doi.org/10.1002/rcm.10145
  7. Se Pu. 2025 Oct;43(10): 1145-1153
      With the rapid advancement of industrialization, agricultural intensification, and urbanization, issues pertaining to environmental pollution and food safety have become increasingly prominent. The use of pesticides plays a vital role in augmenting agricultural yield and quality, thereby serving as a foundational element of modern agriculture. However, improper or excessive application can lead to pesticide residues, which pose a significant threat to ecological systems and human health. Therefore, it is essential to enhance the surveillance of pesticide residue levels and to pioneer novel, efficient analytical methodologies. Sample pretreatment constitutes a crucial stage in the detection pipeline. Consequently, the development of rapid, green, and efficient sample pretreatment techniques has advanced significantly and gained widespread application in recent years. To effectively monitor pesticide residues in fruits and vegetables while reducing matrix interference, we established a high-throughput method for detecting 34 pesticides and their metabolites. This method utilizes a modified QuEChERS approach with carboxylated multi-walled carbon nanotubes (MWCNTs-COOH) as a clean-up sorbent, followed by analysis with gas chromatography-tandem mass spectrometry (GC-MS/MS). The detection conditions for 34 pesticide and metabolite residues in fruits and vegetables were established through the optimization of the pretreatment process, chromatographic conditions, and mass spectrometry parameters. Specifically, fruit and vegetable samples were homogenized and extracted using a commercial QuEChERS EN extraction kit. Following shaking and centrifugation, the supernatant was transferred to a purification tube containing 10 mg of MWCNTs-COOH. Subsequently, this supernatant was evaporated to near-dryness under a gentle stream of nitrogen, reconstituted in ethyl acetate containing an internal standard, and filtered through a 0.22 μm nylon membrane filter. The target substances were separated on a HP-5MS UI quartz capillary column (30 m×0.25 mm×0.25 μm) with a programmed temperature gradient, detected by GC-MS/MS in multiple reaction monitoring (MRM) mode, and quantified using a matrix-matched internal standard calibration method. A full scan was performed across an m/z range of 45-500. Retention times and characteristic fragment ions were identified using the NIST mass spectral library. The most intense fragment ion was selected as the precursor ion. Parameters including dwell time and collision energy were then optimized to select the optimal product ion for each transition. Acetonitrile was selected as the optimal extraction solvent, and 10 mg was determined to be the optimal dosage of MWCNTs-COOH for purification. Under the optimized conditions, all 34 pesticides and metabolites demonstrated good linearities within their respective concentration ranges, with correlation coefficients (R2) greater than 0.997 4. The method demonstrated low limits of detection (LODs) and quantification (LOQs), ranging from 0.023 to 0.817 μg/kg and 0.077 to 2.696 μg/kg, respectively. At three spiked concentration levels (low, medium, and high), the recoveries for the 34 pesticides and metabolites ranged from 78.9% to 104.5%, with relative standard deviations (RSDs) of 1.0% to 7.8%. Additionally, matrix effects were evaluated for six types of fruits and vegetables at a spiked mass concentration of 0.2 μg/mL. The results indicated significant differences in matrix effects among the sample matrices. Chives exhibited the strongest matrix effect, followed by chili peppers and celery. Bananas, grapes, and peaches were the least affected. Overall, strong matrix effects were observed in over 20% of the analyte-matrix combinations, with vegetables generally exhibiting a stronger influence than fruits. The evaluation confirmed significant differences in matrix effects for the target pesticides and metabolites across the various sample matrices. Consequently, a matrix-matched calibration method was employed for accurate quantification to correct for these effects. The developed method demonstrates high purification efficiency, accuracy, and reproducibility, rendering it highly suitable for the simultaneous determination of multiple pesticide and metabolite residues in fruits and vegetables.
    Keywords:  QuEChERS; carboxylated multi-walled carbon nanotubes (MWCNTs-COOH); gas chromatography-triple quadrupole mass spectrometry (GC-MS/MS); pesticides and metabolites; vegetables and fruits
    DOI:  https://doi.org/10.3724/SP.J.1123.2025.02001
  8. J Pharm Biomed Anal. 2025 Sep 20. pii: S0731-7085(25)00492-3. [Epub ahead of print]267 117151
      Avacopan is a new treatment for antineutrophil cytoplasmic antibody-associated vasculitis (ANCA-AAV). To date, there has been a lack of published bioanalytical methods to assay it in plasma, resulting in sparse pharmacokinetic data in clinical settings. The objective of this study was to develop and validate a liquid chromatography tandem mass spectrometry (LC-MS/MS) method for the quantification of avacopan in human plasma. [2H4]-Avacopan was as used as internal standard (IS). Samples were prepared by protein precipitation and separated was on an Accurore® C18 column (2.1 ×50 mm, 2.6 µm), with an elution gradient at a flow rate of 0.5 mL/min. The mobile phase consisted of acetonitrile (0.1 % formic acid) and water (0.1 % formic acid). The analysis run time was 6 min. Avacopan was detected by electrospray ionization on a TSQ Quantis® triple quadrupole mass spectrometer (ThermoFisher Scientific). The linearity of method ranged from 10 to 800 ng/mL. The within-run and between-run relative standard deviations were < 10.2 %. The within-run and between-run relative errors ranged from 2.4 % to 14.4 %. The IS-normalized matrix effect ranged from 2.2 % to 5.1 %, and the IS-normalized extraction recovery ranged from 104.3 % to 109.7 %. The method was fully validated, including checks on linearity, dilution integrity and carry-over. Plasma samples from 16 patients undergoing treatment for ANCA-AAV were then successfully treated with the method. The reanalysis of the samples incurred was below 14 %. This method is suitable for plasma drug monitoring of avacopan because it is both accurate and precise, and meets all validation criteria.
    Keywords:  Avacopan; LC-MS/MS; Pharmacokinetics; Therapeutic drug monitoring; Vasculitis
    DOI:  https://doi.org/10.1016/j.jpba.2025.117151
  9. Anal Sci Adv. 2025 Dec;6(2): e70036
      Metabolomics is the study of the complete set of small molecules involved in the biochemical processes within a biological system. It links directly to metabolism, capturing the biochemical pathways and processes in a state-specific manner and aiming to understand the dynamic interactions within these metabolites, including how they reflect the physiological and environmental conditions as well as cellular and physiological responses. Presently, Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR-MS) is the highest performance mass spectrometry technology for untargeted metabolomic analysis, allowing the simultaneous detection of thousands of compounds in a single analysis. This analytical performance is due to its extreme mass resolution and exceptional mass accuracy, unmatched by any other type of mass spectrometer. This technology enables precise identification and differentiation of metabolites within complex biological samples, providing highly accurate molecular formulas, based on exact mass and fine isotopic distribution. This review focuses on new developments in FT-ICR-MS technology for metabolomic analysis, new methodologies and recent applications. It also addresses the current challenges and perspectives for the use of FT-ICR-MS in metabolomics.
    DOI:  https://doi.org/10.1002/ansa.70036
  10. Rapid Commun Mass Spectrom. 2025 Dec 30. 39(24): e10131
       BACKGROUND: Hypertension is a major cause of premature death worldwide despite the availability of a number of antihypertensive medication monotherapies. Therefore, several polytherapies have been prescribed, among which the combination of amlodipine with indapamide is often the preferred choice to control blood pressure, especially in the elderly, because of its efficacy and safety. To ensure the quality of this combination drug, a versatile procedure for the simultaneous quantification of components is required. Thus, this study aims to develop a liquid chromatography - tandem mass spectrometric procedure and validate according to FDA and EMA guidelines to determine amlodipine and indapamide in human plasma.
    METHODS: A liquid-liquid extraction with tert-butyl methyl ether and ethyl acetate (1:1) was applied to extract the compounds. Amlodipine was ionized with positive electrospray ionization and detected by multiple reaction monitoring mode, while indapamide was ionized with negative electrospray ionization and detected by selected ion monitoring mode. Samples were chromatographically analyzed on a C18 column (150 × 4.6 mm; 3.5 μm), eluted by the mobile phase of methanol and 0.025% formic acid (90:10, v/v).
    RESULTS: Linearity ranged from 0.29- to 17.14-ng/mL amlodipine, from 1.14- to 68.57-ng/mL indapamide. The lower limit of quantitation of amlodipine and indapamide is 0.29- and 1.14-ng/mL, respectively. The validation using furosemide as an internal standard showed that the specificity, intra- and interday precision and accuracy, matrix effect, sample carryover, dilution, and stability were in the acceptable range.
    CONCLUSIONS: The method met validation criteria of US-FDA and EMA guidelines, thereby recommended for application in in vivo bioavailability and bioequivalence assessment of fixed-dose combinations of amlodipine with indapamide.
    Keywords:  LC–MS/MS; Vietnam; amlodipine; human plasma; indapamide
    DOI:  https://doi.org/10.1002/rcm.10131
  11. Int J Mol Sci. 2025 Sep 16. pii: 9025. [Epub ahead of print]26(18):
      The complexity of human exposure to surrounding chemicals warrants developing analytical methods that are capable of the simultaneous quantitation of many diverse environmental pollutants and their biomarkers for the needs of human biomonitoring (HBM). Examples include pesticides used in veterinary medicine, such as fipronil (FIP), imidacloprid and pyrethroids, as well as other chemicals, like bisphenols and flame retardants. The goal of this paper was to develop and validate a liquid chromatography-tandem mass spectrometry method for the quantification of selected organic contaminants in human urine. The method was then applied to real samples and used to assess the potential of a new FIP biomarker, fipronil-hydroxy (FIP-OH), for HBM. As a sample preparation protocol, enzymatic deconjugation followed by solid phase extraction were used. The method was successfully developed and validated for 16 organic pollutants and/or their metabolites, with lower limits of quantitation ranging from 0.5 to 2000 pg/mL. FIP-OH could not be included in the method, possibly due to its chemical instability. In an application study among pet owners, the detection rate for FIP was 71% (median: 3.32 pg/mL); several other chemicals were also commonly detected. The results of validation and application experiments confirm that the method can be used in HBM studies to quantify organic pollutants in urine.
    Keywords:  bisphenol S; flame retardants; human biomonitoring; liquid chromatography–mass spectrometry; pesticides; urine
    DOI:  https://doi.org/10.3390/ijms26189025
  12. Se Pu. 2025 Oct;43(10): 1109-1118
      Synthetic cannabinoids (SCs), which are significantly more potent and efficacious than natural cannabis, are among the most widely abused new psychoactive substances. The emergence of the so-called first-generation SCs was followed by other SCs that eventually led to the development of eighth-generation indole/indazole amide-based SCs. Indeed, this entire category of SCs was added to the list of controlled substances on July 1, 2021. SCs can be disguised in various ways and are commonly sold in the form of electronic cigarette oil. SCs quickly enter the bloodstream through the lungs when smoked and are eventually excreted in the forms of precursors and metabolites in urine and feces following oxidation and metabolism, and finally enter the urban sewage system. SCs abuse can be studied and evaluated by analyzing SCs and their metabolites in municipal wastewater, thereby providing a practical reference. Therefore, methods for detecting SCs and their metabolites in wastewater need to be developed.In this study, a solid phase extraction (SPE)-liquid chromatography-tandem mass spectrometry (LC-MS/MS) method was developed for the simultaneous determination of 38 indazole amide SCs and 15 metabolites in wastewater. Samples were treated using OasisⓇ MCX SPE, and multiple reaction monitoring (MRM) mode was used with mobile phases comprising (A) 0.1% formic acid aqueous solution and (B) methanol-acetonitrile (1∶1, v/v). The following gradient-elution conditions were used: 0-8 min, 55%A-15%A; 8-15 min, 15%A; 15-16 min, 15%A-55%A; 16-18 min, 55%A. Target analytes were separated using a SHIMADZU Shim-pack GIST-HP C18 AQ column (100 mm×2.1 mm, 1.9 µm) at a column temperature of 40 ℃ and a flow rate of 0.4 mL/min. The injection volume was 10 µL. The 38 SCs and 15 metabolites were identified within 11 min using MRM mode; these analytes exhibited good linear relationships and correlation coefficients (r) exceeding 0.990 5. The limits of detection were 0.03-1.30 ng/L, and the limits of quantification were 0.11-4.30 ng/L, respectively, which meet the requirements for analyzing SCs and their metabolites in actual samples. Precisions (n=6) were determined to be 2.1%-15.5% by spiking wastewater samples with 10, 50, and 200 ng/L of the 38 SCs and 15 metabolites. Recoveries of the 38 SCs and 15 metabolites were 61.2%-129.3% by spiking wastewater samples at low (10 ng/L), medium (50 ng/L), and high (200 ng/L) levels. Good performance was observed when real samples were analyzed. The developed method is accurate, rapid, sensitive, and effective for the determination of the 38 SCs and 15 metabolites in wastewater, thereby satisfying monitoring and evaluation requirements.
    Keywords:  liquid chromatography-tandem mass spectrometry (LC-MS/MS); metabolites; solid phase extraction (SPE); synthetic cannabinoids (SCs); wastewater
    DOI:  https://doi.org/10.3724/SP.J.1123.2024.11016
  13. Mar Drugs. 2025 Aug 30. pii: 352. [Epub ahead of print]23(9):
      Glycolipids are structurally diverse amphiphilic molecules with potential as non-petrochemical-derived bioproducts, including surfactants, emulsifiers, and antioxidants. The different bioactivities associated with this range of glycolipid structures also present opportunities for dietary supplements, cosmetics, and pharmaceuticals. Marine glycolipids are underexplored due to challenges with purification and structural characterisation. Analytical approaches enabling efficient sample purification, isolation, and identification of target glycolipids are crucial to determining the bioactivity and functions of organisms such as shellfish and seaweed. This review summarises advances in analytical methods applicable to marine glycolipids, including extraction and enrichment methods tailored to specific subclasses. Thin-layer chromatography (TLC)-based rapid detection techniques developed for specific subclasses in complex biological samples are discussed, alongside structure identification methods based on liquid chromatography (LC)-electrospray ionisation (ESI)-tandem mass spectrometry (MS/MS). Hydrophilic interaction liquid chromatography (HILIC), reverse-phase liquid chromatography (RPLC), and supercritical fluid chromatography (SFC) coupled with MS detection are reviewed for their application to glycolipids. The application of two-dimensional liquid chromatography (2D-LC) and advanced MS-based approaches that facilitate both the rapid resolution and comprehensive characterisation of molecular species are also reviewed.
    Keywords:  LC-MS/MS; TLC; glycolipid analysis; glycolipid extraction; marine cerebrosides; marine gangliosides; marine glycolipids
    DOI:  https://doi.org/10.3390/md23090352
  14. Analyst. 2025 Sep 25.
      Single-cell lipidomics holds tremendous promise for understanding a wide range of pathological conditions involving heterogenous cell populations, including infection, cancer, diabetes, and cardiovascular disease and yet its widespread adoption has been hitherto limited. Although Liquid Chromatography Mass Spectrometry (LC-MS) is a globally established method for lipidomics, its application to single cells has been considered particularly challenging, if not impossible, due to the very low sample volume and the high dynamic range and structural complexity of cellular lipids. Recent advances have shown that LC-MS-based single-cell lipidomics is achievable, offering the benefit of sampling cells in their native state, as well as chromatographic separation to reduce matrix effects and enhance peak annotation. In this study, we advocate for wider adoption of single-cell lipidomics by demonstrating that a range of widely accessible LC-MS platforms can successfully generate single-cell lipid profiles. Using four distinct instrumental configurations, we provide a perspective on the achievable depth of coverage and annotation. We show that polarity switching, ion mobility spectrometry, and electron-activated dissociation significantly enhance both lipidome coverage and confidence in lipid identification from single cells.
    DOI:  https://doi.org/10.1039/d5an00851d
  15. Animals (Basel). 2025 Sep 13. pii: 2682. [Epub ahead of print]15(18):
      Cortisol measurement in dogs commonly supports the diagnosis of hypercortisolism or hypoadrenocorticism. Unlike serum cortisol, urine cortisol is less affected by daily fluctuations, and collection is non-invasive, making the urine cortisol-to-creatinine ratio (UCCR) a useful diagnostic tool. Immunoassays are commonly used but lack specificity for free, biologically active cortisol. Liquid chromatography-tandem mass spectrometry (LC-MS/MS) is recommended to overcome this limitation. This study aimed to validate an LC-MS/MS method for urinary cortisol measurement, establish a reference interval for UCCR in dogs, and compare the results with the commercial immunoassay system Immulite® 2000 Xpi (Siemens, Cary, NC, USA). A comprehensive method validation was performed. Across different concentrations, the intra- and inter-assay coefficients of variation (CV) ranged from 2.39% to 9.45%, accuracy ranged from 87.7% to 105.5%, and bias varied from -12.3% to 5.53%, which were all within acceptable limits. The method demonstrated excellent linearity (r2 ≥ 0.98), and stability under various conditions was satisfactory (RSD: -12.4% to 13.6%). Interference from endogenous and exogenous corticosteroids was negligible. The established reference interval for UCCR was 0.21-2.84 × 10-6. The exploratory comparison with the immunoassay revealed systematic and proportional differences between methods. The LC-MS/MS method demonstrated excellent analytical performance in terms of accuracy and specificity, and showed suitability for clinical application.
    Keywords:  canine endocrine disorders; hormone measurement; targeted mass spectrometry; veterinary endocrinology
    DOI:  https://doi.org/10.3390/ani15182682
  16. Se Pu. 2025 Oct;43(10): 1119-1126
      Photoinitiators are indispensable components in the formulation of inks used for printing packaging materials. Residual photoinitiators on the surface of packaging materials may migrate and contaminate the contents, posing potential risks to human health. Toxicological experiments have shown that photoinitiators pose various risks, including carcinogenicity, reproductive toxicity, and dermal toxicity. However, current quality standards for pharmaceutical packaging materials, both domestically and internationally, do not impose limits on photoinitiators. This study focuses on 12 photoinitiators, which are either restricted or prohibited in certain fields such as food packaging materials. The selected medicinal composite membranes, widely employed in pharmaceutical packaging and requiring significant ink volumes, serve as representative samples. This research holds significant implications for improving the quality standards of pharmaceutical packaging materials and ensuring medication safety. While gas chromatography-mass spectrometry and ultra performance liquid chromatography-tandem mass spectrometry have been reported for photoinitiators detection, UPC2-MS/MS has not yet been reported for detecting these compounds. The principle of UPC2 is based on supercritical fluid chromatography, where the mobile phase primarily consists of supercritical CO2 with a minimal use of organic solvents, aligning with the trend of green chemistry. When coupled with MS, this method also enhances the sensitivity of detection. Therefore, a novel method based on UPC2-MS/MS was established for the determination of the 12 photoinitiator residues in medicinal composite membranes. MS conditions, makeup solution conditions (solvent, additive type, additive ratio, flow rate), and sample pretreatments were systematically optimized. Photoinitiator residues were extracted from the medicinal composite membranes using acetonitrile by ultrasonication. The chromatographic separation was achieved on a UPC2 CSHTM Fluoro-Phenyl column (100 mm × 3.0 mm, 1.7 μm) under gradient elution using a mobile phase composed of supercritical carbon dioxide (A) and methanol (B). Gradient elution was performed as follows: 0-1.5 min, 100%A-95%A; 1.5-2.0 min, 95%A-80%A; 2.0-3.0 min, 80%A-70%A; 3.0-4.0 min, 70%A-100%A; 4.0-5.0 min, 100%A. A methanol-water (99∶1, v/v) mixture was employed as the makeup solution to enhance MS response. The mobile phase flow rate, makeup solution flow rate, column temperature, and injection volume were respectively set at 1.5 mL/min, 0.2 mL/min, 50 ℃ and 1 μL. The automatic back pressure regulator maintained 13.79 MPa. The 12 photoinitiators were monitored in multiple reaction monitoring (MRM) mode with electrospray ionization (ESI) under positive conditions. Quantification was performed using the external standard method. The results showed that all 12 photoinitiators exhibited good linear relationships in the range of 0.1-2.0 μg/mL, with correlation coefficients (r)>0.995. The limits of detection (LODs) and quantification (LOQs) for the 12 photoinitiators were 0.03 μg/mL and 0.1 μg/mL, respectively. At 1LOQ, 2LOQ, and 10LOQ levels, the average recoveries of the 12 photoinitiators ranged from 80.7% to 119.7%, with relative standard deviations (RSDs) between 1.0% and 5.6%. Twelve batches of medicinal composite membranes were tested using this method, and six batches were found positive. The detected photoinitiators were 4-methylbenzophenone, methyl-2-benzoylbenzoate, benzophenone, and 2-isopropylthioxanthone. Among them, methyl-2-benzoylbenzoate showed the highest concentration, but it did not exceed the proposed limit. The established method is accurate, sensitive, rapid, environmentally friendly, and simple pretreatment, which is suitable for monitoring residual photoinitiators in medicinal composite membranes.
    Keywords:  medicinal composite membranes; photoinitiators; supercritical CO2; ultra performance convergence chromatography-tandem mass spectrometry (UPC2-MS/MS)
    DOI:  https://doi.org/10.3724/SP.J.1123.2025.03025
  17. Anal Chem. 2025 Sep 25.
      Matrix-assisted laser desorption/ionization mass spectrometry imaging (MALDI-MSI) is a powerful technique for spatially resolved analysis of diverse molecular species within biological tissues. However, the simultaneous imaging of metal ions and small-molecule metabolites remains analytically challenging due to their distinct chemical properties and desorption/ionization behaviors. Herein, 5,6-diamino-1,10-phenanthroline (DAP) hydrochloride was introduced as a bifunctional matrix that enables concurrent MALDI-MS imaging of metal ions and endogenous metabolites from the same tissue section. In the positive ion mode, DAP forms stable chelation complexes with metal ions, enhancing their ionization efficiency while preserving spatial localization. In negative ion mode, DAP hydrochloride exhibits excellent matrix properties for the efficient desorption and ionization of a wide range of endogenous metabolites. This strategy was successfully applied to tissue sections, achieving high-quality imaging of both metal ions and metabolites without the need for additional matrix coating. Our results demonstrate that DAP hydrochloride serves as a versatile and efficient matrix for multimodal molecular imaging and offers a promising platform for investigating metal-metabolite interactions in situ.
    DOI:  https://doi.org/10.1021/acs.analchem.5c02995
  18. Se Pu. 2025 Oct;43(10): 1100-1108
      According to the Safety and Technical Specification for Cosmetics (2015), the addition of chemical drugs to cosmetics is strictly prohibited. Anti-alopecia cosmetics are often found to contain illegal additions of prohibited drugs such as minoxidil, finasteride and other substances. Ultra-high performance liquid chromatography-tandem triple quadrupole-linear ion trap mass spectrometry (UHPLC-Q-TRAP/MS) has become a powerful technology for the simultaneous detection of illegal ingredients in cosmetics due to its advantages of rapid analysis, high sensitivity, high throughput and high selectivity. An ultra-high performance liquid chromatography-multiple reaction monitoring-information dependent acquisition-enhanced production scanning (UHPLC-MRM-IDA-EPI) method was developed to determine 13 JAK inhibitors in anti-alopecia cosmetics, including baricitinib, tofacitinib, ritlecitinib, peficitinib, abrocitinib, upadacitinib, ivarmacitinib, fedratinib, filgotinib, ruxolitinib, momelotinib, pacritinib and bozitinib. The influence of extraction solvents was investigated. Approximately 0.2 g of the sample was weighed and placed in a 50 mL graduated centrifuge tube with a cap. Then, 2 mL of 0.1% (v/v) aqueous formic acid and 10 mL of acetonitrile were added, followed by vortexing for 1 min. Subsequently, the mixture was sonicated in an ultrasonic bath for 15 min. Added 0.5 g of sodium chloride, and the mixture was centrifuged at 8 000 r/min for 8 min at 5 °C. The supernatant was transferred to another 50 mL graduated centrifuge tube with a cap. The residue was added with 10 mL of acetonitrile and the extraction procedure was repeated. After high-speed centrifugation, the supernatant was combined. The combined supernatant was added with 0.2 g of sodium chloride, and the mixture was frozen at ‒20 °C for 1 h. It was centrifuged at 8 000 r/min for 5 min at 5 °C. The acetonitrile layer was collected and filtered through a 0.22 μm organic filter membrane. The initial filtrate was discarded, and the subsequent filtrate was collected as the sample solution. A C18 column was used for chromatographic separation, enabling the successful separation of the analytes within 10 min. The mobile phase consisted of 0.1% (v/v) aqueous formic acid and acetonitrile, with gradient elution applied to optimize separation efficiency. The flow rate was set at 0.3 mL/min, and the column temperature was maintained at 40 ℃ to ensure consistent performance. A fixed injection volume of 2 μL was used to guarantee reproducibility and accuracy in the analysis. This configuration enabled the rapid and reliable separation of the target compounds. For the analysis of the 13 kinds of JAK inhibitors, an ESI source operating in positive ion mode was used with MRM-IDA-EPI detection. Quantification was performed by the external standard method using matrix-matched standard solutions. Good separation of the 13 JAK inhibitors was achieved under the optimized chromatographic conditions. Calibration curves were constructed by plotting the peak area of quantitative ions against the compound mass concentration. These curves exhibited excellent linearity within the investigated concentration range, with r all exceeding 0.996. The limits of detection (LODs) and limits of quantification (LOQs) of the 13 JAK inhibitors were 1.5-1.7 ng/g and 9.2-10.9 ng/g. To validate accuracy and precision, two cosmetic matrices (water-soluble and cream) were tested at three levels: LOQ, 2×LOQ and 10×LOQ. Recoveries of the 13 JAK inhibitors ranged from 94.7% to 102.2% for the water-soluble matrix and from 92.4% to 99.2% for the cream matrix, with relative standard deviations (RSDs) ≤8.8%. This method is characterized by high efficiency, rapidity, accuracy, sensitivity and simplicity, making it a powerful tool for rapid risk screening and simultaneous quantitative analysis of JAK inhibitors in anti-alopecia cosmetics.
    Keywords:  anti-alopecia cosmetics; illegally added; janus kinase (JAK) inhibitors; ultra-high performance liquid chromatography-triple quadrupole composite linear ion trap mass spectrometry (UHPLC-Q-TRAP/MS)
    DOI:  https://doi.org/10.3724/SP.J.1123.2025.02008
  19. J Sep Sci. 2025 Sep;48(9): e70273
      Metabolite quantification without a radiolabeled analogue or the reference standard is challenging. This study presented a novel high resolution mass spectrometry (HRMS)-based analytical strategy for simultaneous metabolite profiling and standard-free metabolite quantification of drug candidates with limited restriction on structure. The model drug was artemisinin (ART), which is widely used in clinic to treat malaria. A major hydroxylated metabolite (M1) with minor isomer M2 was first found for ART in human liver microsomes using LC-HRMS. Second, the MS response ratio (MRR) of the hydroxylation pathway in specific biological matrix was investigated using several probe substituents (midazolam, etc.). In contrast to varying (0.5-1.9-fold difference) MS response of probe drugs and their metabolites at equimolar concentration, the MRR ratio of the hydroxylation pathway was relatively constant (∼0.6-fold). Third, simulated calculation curves for M1 were obtained based on the calibration curves of ART and the MRR ratios of the hydroxylation pathway. Fourth, the present analytical strategy provided reliable (< 31.7% deviation from that obtained using a validated LC-MS technique) quantitative data on enzyme kinetics and pharmacokinetics. As a result, M1 was found to be the predominant metabolite for ART (3.6-fold of ART exposure) in human, and another unidentified hydroxylated metabolite M2 accounted for ∼40.0% of ART exposure. The results demonstrated that the new HRMS-based analytical strategy along with the MRR ratio of a metabolic pathway evaluated by appropriate probe substituents can be a valuable tool for the simultaneous metabolite profiling and standard-free metabolite quantification in early drug development.
    Keywords:  MS response ratio (MRR); artemisinin; high‐resolution mass spectrometry; hydroxylated metabolite; metabolite quantification; standard‐free
    DOI:  https://doi.org/10.1002/jssc.70273
  20. J Chromatogr A. 2025 Sep 15. pii: S0021-9673(25)00727-7. [Epub ahead of print]1762 466383
      Chromatographic separation of product-related impurities in antisense oligonucleotides (ASOs) is inherently challenging due to the structure similarity among closely related species. Coupling mass spectrometry (MS) to chromatography and UV detection has been a successful strategy to overcome some of the challenges; however, it does not address the need to implement orthogonal chromatographic methods to ensure comprehensive characterization of ASO impurities through distinct separation techniques. In this study, we developed a two-dimensional liquid chromatography (2D-LC) method for the analysis and quantitation of major product-related impurities in ASOs. The method integrates a hydrophilic interaction chromatography (HILIC) in the first dimension with a weak anion exchange (WAX) separation in the second, thus providing high orthogonality based on differences in polarity and charge. We employed Design of Experiments (DoE) to guide method development and systematically optimized key chromatographic parameters in both dimensions. The final optimized method was configured in selective comprehensive mode, and the main peak region from the first dimension was fully sampled in multiple cuts and analyzed by fast WAX separation. Solvent compatibility between dimensions was confirmed, and no additional solvent modulation was necessary. The method demonstrated excellent linearity (R² > 0.999), low limits of quantitation (0.3-0.6 µg/mL, or 0.3 %-0.6 %), and detection limits down to 0.1 % for all impurities tested, well within regulatory requirements for impurity profiling. This fully UV-based 2D-LC platform offers a practical solution for ASO impurity analysis without the need for MS detection and analysis, suitable for both development and routine quality control. The ability to switch between HILIC-WAX and HILIC-MS modes enhances the method's versatility in oligonucleotide characterization and complex impurity profiling.
    Keywords:  Anion exchange chromatography; Hydrophilic interaction chromatography; Impurity profiling; Oligonucleotide; Two-dimensional liquid chromatography
    DOI:  https://doi.org/10.1016/j.chroma.2025.466383
  21. J Chromatogr A. 2025 Sep 18. pii: S0021-9673(25)00734-4. [Epub ahead of print]1762 466390
      The separation and quantitative analysis of chiral compounds are critical for ensuring the safe use of chiral drugs and understanding the functional roles of small-molecule chiral compounds in biological systems. Chromatography-mass spectrometry (MS)-based techniques, especially direct separation and probe labeling methods, are essential for chiral separation. Unlike direct separation methods, the probe labeling technique involves converting chiral analytes into diastereomers via chemical derivatization. This approach not only improves separation efficiency and detection sensitivity in reversed-phase chromatography but also enables the simultaneous trace-level analysis of multiple chiral compounds in complex biological matrices. This review provides a comprehensive overview of recent advancements in chiral compound separation using probe labeling methods. Chiral probes are systematically categorized based on their reactive functional groups, with a thorough analysis of their applicability across various scenarios and the limitations of current probes. Additionally, strategies for targeted absolute quantification, relative quantification, and non-targeted analysis of chiral compounds are discussed, highlighting the potential of probe labeling in metabolic profiling and biomarker discovery. In conclusion, this review offers a systematic examination of the key technologies involved in probe labeling for chiral compound separation and quantification. It provides valuable insights into efficient chiral biomarker screening and offers strong technical support for drug quality assessment, research, and development. These advancements have significant scientific and practical implications for the advancement of chiral chemistry.
    Keywords:  Biomarker screening; Chiral probe; Chiral separation; Relative quantitative analysis; UHPLC-MS
    DOI:  https://doi.org/10.1016/j.chroma.2025.466390
  22. J AOAC Int. 2025 Sep 27. pii: qsaf081. [Epub ahead of print]
       BACKGROUND: A multi-analyte method was developed for determination and confirmation of 26 natural and synthetic psychedelic and psychoactive compounds from botanical sources using a simple extraction procedure and UPLC-ESI-MS/MS analysis.
    OBJECTIVE: The objective of this work was to develop and validate the method for analysis of psychedelic and psychoactive compounds in botanicals (fungi, cactus, leaf), extract (brewed tea), synthetic and simulated finished product (using maltodextrin).
    METHODS: The method uses an acidified methanol solution for extraction and diphenhydramine as internal standard. Extracts are subjected to UPLC with tandem mass spectrometry using a phenyl-hexyl column and acidified mobile phase with acetonitrile gradient. Validation studies followed US Pharmacopeia <1225> and Official Methods of Analysis  SM Appendix K guidelines to assess specificity, accuracy (recovery), repeatability and intermediate precision, limits of detection and quantification, calibration curve linearity, system suitability, and robustness.
    RESULTS: Average recovery of spiked replicates in matrix and surrogate matrixes varied between 88-124% for analytes in fungi, cactus, and leaf matrixes; 81-106% in brewed tea matrix; and 81-174% across all 26 analytes in maltodextrin. Norbaeocystin and harmaline were the only analytes outside the acceptance criterion (79-126%) in maltodextrin. The 90% upper confidence limit on repeatability was ≤33% for all analytes and matrixes except for norbaeocystin. Repeatability precision for analysis of matrixes with native analytes met the acceptance criterion of ≤ 33% in all cases and the 90% upper confidence limit on intermediate precision was ≤35% in all cases. LOQ values fell below the lowest calibration standard (0.016 µg/mL) for all 26 analytes.
    CONCLUSION: The method met the pre-determined acceptance criteria for recovery and precision in nearly all cases. Calibration curve linearity and system suitability measures were established.
    HIGHLIGHTS: A method for 26 psychedelic/psychoactive compounds was validated for analysis of botanical (fungi, cactus, leaf), extract (brewed tea), synthetic and simulated finished product (using maltodextrin) using native and surrogate botanicals.
    DOI:  https://doi.org/10.1093/jaoacint/qsaf081
  23. Anal Chem. 2025 Sep 22.
      The mutagenic potential of N-nitrosamines has heightened regulatory scrutiny and prompted numerous drug recalls due to their formation as impurities during pharmaceutical manufacturing. However, the simultaneous and rapid analysis of multiple N-nitrosamines remains challenging. In this study, we show a rapid (<1 min) and robust multiple reaction monitoring (MRM) approach for the trace-level quantitation of N-nitrosamines across a wide concentration range (10 ng/mg to 500 μg/mg) in diverse pharmaceutical matrices. Lithium cation (Li+) adduct formation during ionization is utilized to enable diagnostic fragmentation in tandem mass spectrometry (MS/MS), yielding a limit of detection of 5 ng/mg with high quantitative accuracy and precision. This method is also applied to trace analysis of N-nitrosated drug impurities within their parent pharmaceutical matrices. With minimal sample preparation, rapid analysis times, and broad applicability to complex pharmaceutical formulations, this MRM method offers a practical and powerful tool for the identification and quantitation of N-nitrosamines and its potential adoption in pharmaceutical quality control and industrial settings.
    DOI:  https://doi.org/10.1021/acs.analchem.5c03641
  24. J Nutr. 2025 Sep 23. pii: S0022-3166(25)00568-1. [Epub ahead of print]
       BACKGROUND: Nτ-Methylhistidine released endogenously from muscle into urine is an index of muscle protein breakdown, and part of Nτ-methylhistidine it is excreted as the acetylated derivative, N-acetyl-Nτ-methylhistidine).
    OBJECTIVE: To measure the urinary concentrations of Nτ-methylhistidine and N-acetyl-Nτ-methylhistidine, a quantitative method was established using liquid chromatography-tandem mass spectrometry (LC-MS/MS) operated in Q1 single-ion monitoring (SIM) mode and multiple reaction monitoring (MRM) mode with stable-isotope dilution analysis.
    METHODS: We synthesized N-acetyl-Nτ-methylhistidine and its isotopic analog for stable-isotope dilution analysis. Then, we validated a method for quantifying urinary concentrations of intact Nτ-methylhistidine, N-acetyl-Nτ-methylhistidine, and creatinine to precisely determine their concentrations in rats, humans, cattle, and dogs. Creatinine correction was applied to normalize for urine volume.
    RESULTS: For both SIM and MRM analysis, the acceptable linear ranges of detection were 5 pmol/mL to 10 nmol/mL with r2 = 1.000 in SIM mode and MRM mode. The LC-MS/MS methods operated in both SIM and MRM transitions detected changes in the urinary excretion levels of Nτ-methylhistidine and N-acetyl-Nτ-methylhistidine in response to starvation and re-feeding of rats. The methods also detected urinary concentrations of Nτ-methylhistidine and N-acetyl-Nτ-methylhistidine in cattle, humans, and dogs.
    CONCLUSIONS: These results suggest that the LC-MS/MS method operated in SIM mode and MRM mode can be used to measure urinary concentrations of Nτ-methylhistidine and N-acetyl-Nτ-methylhistidine.
    Keywords:  LC–MS/MS; N(τ)-methylhistidine; N-acetyl-N(τ)-methylhistidine; method validation
    DOI:  https://doi.org/10.1016/j.tjnut.2025.09.024
  25. Toxins (Basel). 2025 Sep 21. pii: 473. [Epub ahead of print]17(9):
      Aflatoxin B1 (AFB1) contamination in Scutellaria baicalensis poses a serious threat to the safety of traditional Chinese medicinal products. In this study, a sensitive and reliable ultra-high performance liquid chromatography-tandem mass spectrometry (UHPLC-MS/MS) method was developed for the quantitative determination of AFB1 in Scutellaria baicalensis. Method optimization included selection of chromatographic columns, mobile phase composition, and mass spectrometric parameters. Sample pretreatment was also optimized to reduce matrix interference and enhance extraction efficiency. The method showed excellent linearity (R2 > 0.999) in the range of 0.1-10.0 µg/L, with a limit of detection (LOD) of 0.03 µg/kg and a limit of quantification (LOQ) of 0.10 µg/kg. Precision and recovery studies demonstrated good repeatability and accuracy, with intra- and inter-day relative standard deviations (RSDs) below 5.2% and recoveries ranging from 88.7% to 103.4%. Application of the method to six commercial Scutellaria baicalensis samples revealed detectable AFB1 in two samples, though all levels were below national safety limits. This method provides a robust tool for routine monitoring of AFB1 in herbal medicines and supports the establishment of quality control systems for Scutellaria baicalensis.
    Keywords:  Scutellaria baicalensis; UHPLC-MS/MS; aflatoxin B1; method validation; quantitative analysis
    DOI:  https://doi.org/10.3390/toxins17090473
  26. Talanta. 2025 Sep 19. pii: S0039-9140(25)01373-6. [Epub ahead of print]298(Pt A): 128882
      Mung bean sprouting significantly modifies the composition of free amino acids (AAs), making studying its dynamic changes crucial for food nutrition, food processing, and plant metabolism. Utilizing derivatization with chiral α-methoxy-α-trifluoromethylphenylacetyl chloride, ultra-performance liquid chromatography-tandem mass spectrometry (UPLC-MS) and matrix-assisted laser desorption/ionization-trapped ion mobility spectrometry-mass spectrometry (MALDI-TIMS-MS) methods were developed for enantiomeric AAs analysis. Mechanism study revealed that the structural differences of the derivatized AA enantiomers drive their separation. UPLC-MS with a C18 column resolved twelve nonpolar AAs within 30 min, achieving detection limits of 1.4-4.1 ng/L. MALDI-TIMS-MS allowed rapid separation and spatial mapping of the same set of AAs under fixed conditions with little sample preparation. The derivatization strategy provides a novel approach for chiral analysis and chiral metabolomics.
    Keywords:  Chiral amino acids; MALDI-TIMS-MS; Mung bean; UPLC-MS; α-methoxy-α-trifluoromethylphenylacetyl chloride
    DOI:  https://doi.org/10.1016/j.talanta.2025.128882
  27. Molecules. 2025 Sep 18. pii: 3797. [Epub ahead of print]30(18):
      Theophylline represents a significant public health challenge due to its dual acute and chronic toxicity resulting from therapeutic, environmental, and dietary exposures. Effective monitoring across the bio-environmental-food triad requires analytical methods that are highly sensitive, universally applicable, and capable of overcoming complex matrix interferences. This study introduces a flat membrane-based liquid-phase microextraction (LPME) technique combined with LC-MS/MS for the determination of theophylline in diverse matrices. The method eliminates the need for specialized adsorbents or equipment, offering a simple and cost-effective solution for high-throughput sample clean-up. Under optimized conditions, the method demonstrated exceptional sensitivity (LOD: 0.2 ng mL-1) and a wide linear range (0.01-10 μg mL-1). It was successfully applied to plasma, urine, hospital sewage, and green tea, providing accurate (recoveries of 86.7-111.3%) and reproducible (RSD < 10%) results across all matrices. This unified and robust approach effectively addresses matrix interferences and provides a reliable tool for the monitoring and risk assessment of theophylline across multiple domains.
    Keywords:  LC-MS/MS; liquid-phase microextraction; multi-matrix analysis; sample preparation; theophylline
    DOI:  https://doi.org/10.3390/molecules30183797
  28. Toxins (Basel). 2025 Sep 04. pii: 445. [Epub ahead of print]17(9):
      Wild mushroom poisoning is an emerging global food safety issue, especially in subtropical regions like southwestern China, where incidents are geographically clustered. Current detection methods are often time-consuming and overlook region-specific toxins. We developed a rapid, sensitive, and accurate method for the simultaneous detection of ten characteristic mushroom toxins prevalent in Guizhou, China. The method combines graphite multi-walled carbon nanotubes (G-MWCNTs) for sample preparation with Orbitrap high-resolution mass spectrometry (HRMS). Wild mushroom samples were extracted via ultrasonic-assisted methanol-water extraction, purified using G-MWCNTs, and separated on a Hypersil GOLD C18 column (100 mm × 2.1 mm, 1.9 μm). Gradient elution was performed with 0.1% formic acid + 0.01% ammonia and acetonitrile; quantification used the external standard method. The method achieved LODs of 0.005-0.2 mg/kg and LOQs of 0.015-0.6 mg/kg, with RSDs below 18.11% and excellent linearity (R2 = 0.9936-0.9989). Among 45 wild mushroom samples, toxin levels ranged from 0.032 to 445.10 mg/kg, with a detection rate of 22.22%, suggesting notable poisoning risk. This method reduces pretreatment time while ensuring high analytical performance, offering a reliable tool for rapid toxin screening and supporting regional surveillance of wild mushroom poisoning.
    Keywords:  graphitized multi-walled carbon nanotubes; toxins; wild mushrooms
    DOI:  https://doi.org/10.3390/toxins17090445
  29. Metabolomics. 2025 Sep 26. 21(5): 141
       AIM: Phenylketonuria is an inherited metabolic disorder characterized by a deficiency in phenylalanine hydroxylase. However, the impact of this deficit on the patient's overall metabolism is not fully known. Studying this pathology through untargeted metabolomics requires to determine a method for metabolites extraction, here applied to Dried Blood Spot (DBS), a matrix offering several practical advantages.
    METHODOLOGY: The DBS of 30 phenylketonuric patients and 30 healthy controls were used for the study. Following a literature review, different extraction protocols and solvents were investigated, with or without an evaporation step, and compared to identify the most appropriate protocol to extract metabolites from the DBS for metabolomics analysis of phenylketonuria by LC-MS/MS, then applied to the patients and controls to validate its application to phenylketonuria.
    RESULTS: The most promising extraction method is a gentle agitation overnight at 4 °C, with an evaporation step, and an extraction solvent composed by 80%/20% acetonitrile and water. This method extracted 2 to 6 times more metabolites than other protocols tested with a better extraction of amino acids and derivatives. This protocol enabled us to identify metabolic pathways that were disrupted in phenylketonuric patients, as well as differences in metabolite abundance between the different cohorts. Metabolic profiles differed both between patients and controls, and between patients according to their phenylalanine concentration. These differences were independent of the amino acid supplementation in some patients.
    CONCLUSION: The results obtained on the phenylketonuria patients cohort compared to controls, validated the extraction protocol for studying the systemic metabolic impact of phenylketonuria.
    Keywords:  Dried blood spot; Extraction protocol; Metabolomics; Phenylketonuria
    DOI:  https://doi.org/10.1007/s11306-025-02338-9
  30. Metabolites. 2025 Sep 15. pii: 612. [Epub ahead of print]15(9):
      Background/Objectives: Untargeted 1H NMR metabolomics is a robust and reproducible approach used to study the metabolism in biological samples, providing unprecedented insight into altered cellular processes associated with human diseases. Metabolomics is increasingly used alongside other techniques to detect an instantaneous altered cellular function, for example, the role of neutrophils in the inflammatory response. However, in some clinical settings, blood samples may be limited, restricting the amount of cellular material available for a metabolomic analysis. In this study, we wanted to establish an optimal 1D 1H NMR metabolomic pipeline for use with human neutrophil samples with low amounts of input material. Methods: We compared the effect of different neutrophil isolation protocols on metabolite profiles. We also compared the effect of the absolute cell counts (100,000 to 5,000,000) on the identities of metabolites that were detected with an increasing number of scans (NS) from 256 to 2048. Results/Conclusions: The variance in the neutrophil profile was equivalent between the isolation methods, and the choice of isolation method did not significantly alter the metabolite profile. The minimum number of cells required for the detection of neutrophil metabolites was 400,000 at an NS of 256 for the spectra acquired with a cryoprobe (700 MHz). Increasing the NS to 2048 increased metabolite detection at the very lowest cell counts (<400,000 neutrophils); however, this was associated with a significant increase in the analysis time, which would be rate-limiting for large studies. The application of a correlation-reliability-score-filtering method to the spectral bins preserved the essential discriminatory features of the PLS-DA models whilst improving the dataset robustness and analytical precision.
    Keywords:  NMR; metabolomics; neutrophils; paediatric medicine
    DOI:  https://doi.org/10.3390/metabo15090612
  31. Plant Physiol. 2025 Sep 24. pii: kiaf408. [Epub ahead of print]
      Metabolomics has emerged as an essential pillar of plant functional genomics, filling the gap between genotype and phenotype with direct biochemical readout of plant physiology. This update review highlights the contribution of metabolomics as a field towards our current knowledge of plant biology, starting from targeted analysis to the present high-throughput untargeted era of metabolomics. We elaborate on how metabolomics revolutionized the study of plant stress response, unveiling roles of specialized metabolites in defense, adaptation, and ecological interactions, and in extension, its contribution towards functional genomics leading to the improvement of plants with desired traits. We identified and summarized over 500 open-source computational tools for analyzing metabolomics datasets, encompassing processes from mass feature extraction to metabolite annotation. We discuss its use in the elucidation of biosynthetic pathways, especially specialized metabolites in medicinal plants, and the discovery of candidates through comparative transcriptome-metabolome profiling. This review further covers the emergence of metabolome-wide association study (mGWAS) and metabolite QTL analysis (mQTL), which exploit genetic diversity to localize biosynthetic genes and regulatory sites. Emerging technology such as imaging MS, single cell metabolomics, AI-powered metabolite identification and annotation, and global data repositories promise to scale metabolomics to precision crop improvement and synthetic biology. In covering all areas with completeness and vision, we intend that this review acts as the go-to guide for plant metabolism decoders, teachers, and practitioners working to unlock plant metabolism for sustainable agriculture, medicine, and biotechnology.
    Keywords:  Plant metabolomics; data analysis; functional genomics; future directions; metabolic pathways; multi-omics integration; technological advancements
    DOI:  https://doi.org/10.1093/plphys/kiaf408
  32. Molecules. 2025 Sep 11. pii: 3694. [Epub ahead of print]30(18):
      Conventional methods for detecting pharmaceutical and personal care products (PPCPs) in environmental samples are complex, resource-intensive, and not sustainable. Therefore, this study aimed to evaluate an automated sample preparation approach using the Biomek i7 Workstation to analyze 69 PPCPs in wastewater, with the objective to improve monitoring of public health and environmental protection. The method underwent extensive development, including optimization of UPLC-MS/MS parameters, preparation of wastewater matrix blank sample and assessment of extraction efficiency using three types of SPE cartridges. Extraction efficiency trials revealed that the order of suitability for SPE cartridges is Mixed-Mode Anion Exchange (MAX) > Mixed-Mode Cation Exchange (MCX) > Hydrophilic-Lipophilic Balance (HLB). The method demonstrated specificity for all targeted PPCPs, with the max interfering peak for 1, 7 Dimethylxanthine reaching 14.79% of the response at the target limit of quantification (LOQ). The method met ±20% matrix effect tolerance for 63 PPCPs, while 6 PPCPs showed signal enhancement. The 8-point procedural calibration curve prepared using automated robotic extraction has demonstrated linearity across the tested range. A spiking study at low (LQC), medium (MQC), and high (HQC) quality control levels (n = 6), repeated on three separate occasions, showed % RSD values within 20% and % recovery between 80 and 120%. The method met validation requirements, showed reliability in Intra-Laboratory Comparison, Blind Testing (BT) and received high ratings for greenness (Green Analytical Procedure Index, Analytical GREEnness) and practicality (Blue Applicability Grade Index).
    Keywords:  LC-MS/MS; MAX SPE cartridges; Pharmaceuticals and Personal Care Products (PPCPs); automated extraction; greenness assessment; method validation; wastewater
    DOI:  https://doi.org/10.3390/molecules30183694
  33. Metabolomics. 2025 Sep 26. 21(5): 143
       INTRODUCTION: Multivariate modeling is crucial for uncovering complex patterns in metabolomic data, yet the interpretability of such models remains a major challenge.
    METHODS: Here, we propose a network-guided framework that enhances perturbation-based explanations by grouping metabolites according to communities identified in metabolic networks, rather than relying on predefined pathways. The approach is applied to postprandial plasma metabolomic data as a model example and using a metabolic network including KEGG metabolites and enzyme-catalyzed reactions in which they participate.
    RESULTS AND CONCLUSION: Results show that the use of metabolite communities derived from network representation in perturbation-based analysis of multivariate models, serves as a complementary tool for their biochemical interpretation, that might extend it beyond fixed, established pathways. The strategy is model-agnostic and readily transferable across omics domains and multivariate methods, offering a new tool for model interpretability and hypothesis generation in complex biological datasets.
    Keywords:  Cluster cross validation; Interpretability; Metabolomics; Multivariate analysis; Network analysis; Perturbation-based explanations
    DOI:  https://doi.org/10.1007/s11306-025-02347-8
  34. J Nutr Biochem. 2025 Sep 18. pii: S0955-2863(25)00281-5. [Epub ahead of print] 110119
       BACKGROUND: (Poly)phenols are plant-derived compounds with potential benefits for human health. Understanding the absorption and distribution of phenolic compounds within the human body is of great importance for identifying their bioactive form in target organs or tissues, and, consequently, for understanding their biological effects. Mass spectrometry imaging (MSI) is an analytical method that provides a visual in situ representation of the molecular distribution within complex samples and biological tissues. This technique allows to map various molecules in a tissue, providing spatial information that cannot be obtained through traditional mass spectrometry analytical approaches.
    SCOPE AND APPROACH: This review aims to provide a valuable and informative summary of the published MSI applications for evaluating (poly)phenol absorption and distribution in animal tissues. Following PRISMA guidelines, the search string was launched in two web databases, Web of Science and Scopus.
    KEY FINDINGS AND CONCLUSIONS: Of the nine reviewed studies, one applied desorption electrospray ionization (DESI) and the rest matrix-assisted laser desorption ionization (MALDI) to visualize (poly)phenol distribution in mice or rats. MSI represents a viable approach for exploring the absorption and distribution of these bioactive compounds in tissues, useful to enhance the comprehension of their pharmacokinetics, along with their possible site of action and transport mechanisms implicated in their distribution. The findings indicate that the application of MSI to study phenolic compounds in vivo is currently limited, but it is expected to increase as researchers seek to advance their comprehension of the health-promoting attributes of (poly)phenols and their metabolites.
    Keywords:  DESI; MALDI; SIMS; bioavailability; in situ visualization; phytochemicals
    DOI:  https://doi.org/10.1016/j.jnutbio.2025.110119
  35. Ther Drug Monit. 2025 Sep 23.
       BACKGROUND: Biktarvy is an effective antiviral drug for patients with HIV. However, owing to its long-term use and poor patient adherence, sustained and effective Biktarvy treatment is consistently limited by insufficient in vivo drug concentrations. Liquid chromatography (LC)-tandem mass spectrometry-based therapeutic drug monitoring is a common tool for identifying inadequate dosages and preventing antiviral failure. However, this tool requires expensive instruments and reagents, which is a major limitation in resource-limited regions.
    METHODS: A simple and economical liquid chromatography-ultraviolet method was established and validated for simultaneous quantification of Biktarvy-derived bictegravir (BIC) and emtricitabine (FTC) in human plasma. The samples were pretreated through protein precipitation with acetonitrile, and chromatographic separation was performed on a C18 analytical column with gradient elution at a flow rate of 1.0 mL/min. The total runtime for each sample was 15.0 minutes.
    RESULTS: The method exhibited good linearity within the range of 0.5-20.0 mcg/mL for both BIC and FTC. The selectivity, lower limit of quantification, specificity, precision, accuracy, recovery, stability, and dilution integrity were validated, and all satisfied the requirements of the International Council for Harmonisation of Technical Requirements for Pharmaceuticals for Human Use: Bioanalytical method validation and study sample analysis (2022 edition) and the Chinese Pharmacopoeia for bioanalytical method validation (2015 edition). Furthermore, the method exhibited satisfactory performance, with BIC and FTC concentrations ranging between 0.80 and 6.99 mcg/mL and 0.53-4.57 mcg/mL, respectively.
    CONCLUSIONS: A simple and economical liquid chromatography-ultraviolet method was successfully developed for simultaneous quantification of BIC and FTC in human plasma. This method can be extensively used in therapeutic drug monitoring, as in the case of MS-based instrumental deficiency or damage, and in pharmacokinetic studies.
    Keywords:  ; bictegravir; emtricitabine; human immunodeficiency virus; liquid chromatography
    DOI:  https://doi.org/10.1097/FTD.0000000000001388
  36. J Chromatogr A. 2025 Sep 13. pii: S0021-9673(25)00722-8. [Epub ahead of print]1762 466379
      The detection of potent carcinogenic nitrosamine impurities in pharmaceutical products has attracted significant regulatory attention in recent years, and advanced analytical methods are needed to accurately quantify nitrosamines in pharmaceutical products. In this study, a headspace gas chromatography-ion mobility spectrometry (HS-GC-IMS) method was proposed and validated, which addresses two key challenges: achieving the sub-ppb sensitivity required for low-concentration nitrosamine analysis, and reducing matrix interferences in extended-release formulations. Seven investigated nitrosamines showed good linearity (R2>0.99) in the range of 0.5-100 ng/mL, with limits of detection (LOD) of 0.05-0.51 ng/mL and limits of quantification (LOQ) of 0.16-1.70 ng/mL. Precision studies (intra-day relative standard deviation RSD<5%, inter-day RSD<13%) and satisfactory spiked recoveries (84.31%-106.60%) in active pharmaceutical ingredient matrices confirmed the robustness of this method. The developed method eliminates the need for complex extraction and pre-concentration procedures, requires minimal sample preparation and enables rapid gas chromatography separation.
    Keywords:  Gas chromatography; Headspace; Ion mobility spectrometry; Metformin hydrochloride tablets; Nitrosamines
    DOI:  https://doi.org/10.1016/j.chroma.2025.466379
  37. J Chromatogr B Analyt Technol Biomed Life Sci. 2025 Sep 22. pii: S1570-0232(25)00353-8. [Epub ahead of print]1267 124799
      Protoporphyrin IX (PPIX) plays a pivotal role in the heme biosynthesis pathway and serves as both a valuable biomarker in clinical diagnostics and a photosensitizer in photodynamic applications. Despite its physiological importance, accurate quantification of endogenous PPIX in biological matrices remains challenging due to the lack of an analyte-free authentic control matrix and inherent baseline variability. This study describes the development and validation of a high-performance liquid chromatography method with fluorescence detection (HPLC-FLD) for PPIX quantification in rat plasma, applying a surrogate matrix strategy in full compliance with the International Council for Harmonisation M10 guideline. Endogenous PPIX was removed from rat plasma by visible light-induced analyte stripping, enabling the in-house preparation of a surrogate matrix, for accurate calibration sample generation. The method showed appropriate selectivity, excellent linearity over the range of 10 and 700 ng/mL (r ≥ 0.995), satisfactory precision and accuracy across all validation levels. The lower limit of quantification was established at 10 ng/mL. The stability of both the analyte and internal standard was confirmed under various conditions, including 3 freeze-thaw cycles, short- and long-term storage, and autosampler residence. The method was successfully applied in an in vivo study in which male rats were treated with aminolevulinic acid to induce PPIX formation, thereby confirming its suitability for study sample analysis. This fluorescence-based HPLC method offers a practical and cost-effective solution for monitoring PPIX in plasma samples. The bioanalytical method validation using a surrogate matrix approach for endogenous PPIX quantification fully aligned with current international regulatory standards may set a precedent for future method development in this field.
    Keywords:  Biomarker; Endogenous; High-performance liquid chromatography with fluorescence detection (HLPC-FLD); ICH M10; Protoporphyrin IX (PPIX); Rat plasma; Surrogate matrix
    DOI:  https://doi.org/10.1016/j.jchromb.2025.124799
  38. Arch Toxicol. 2025 Sep 24.
      Nitrosamines (NAs) are a class of compounds designated as probable human carcinogens by the IARC, acting DNA mutagens, participating in alkylating DNA at both N7- and O6- positions of guanine, particular for N-nitrosodimethylamine (NDMA). In the present study, we report the development of an LC-MS/MS-based assay to simultaneously measure guanine (Gua), O6-methylguanine (6MGua), and N7-methylguanine (7MGua) in DNA hydrolysates. With the use of three stable isotope internal standards (6-CD3-Gua, 7-CD3-Gua, and Gua-13C2,15N), validation, i.e. determination of selectivity, precision, accuracy, extraction recovery, matrix effect, stability, and feasibility was evaluated by use of the approach developed. This method was used for simultaneous determination of the levels of Gua, 6MGua, and 7MGua in DNA acidic hydrolytes present in a series of samples from human and rat primary hepatocyte treated with NDMA. The stable isotope dilution-based approach was proven to be selective, sensitive, accurate, and convenient, which is a good and convincing in vitro assay for the quantitative analysis of DNA methylation such as 6MGua and 7MGua in Gua.
    Keywords:   N-nitrosodimethylamine; DNA methylation; Isotope dilution; Liquid chromatography-tandem mass spectrometry
    DOI:  https://doi.org/10.1007/s00204-025-04195-w
  39. PeerJ. 2025 ;13 e19988
      Honey is a widely consumed natural agricultural product. Honey bees produce honey by collecting nectar from different flowers and then metabolising it to form honey which is stored in the hive. The current focus of research has been on the primary characteristic metabolites of monofloral honey from different plant sources. There is a lack of understanding of the differences in the transformation and composition of overall metabolites between plant nectar and the honey that is processed by bees after nectar feeding. In this study, loquat nectar and mature loquat honey were used for the detection of all non-volatile metabolites in both by ultra performance liquid chromatography-tandem mass spectrometry (UPLC-MS/MS). Subsequently, an analysis was conducted on the primary metabolites, including saccharides, amino acids and their derivatives, nucleotides and their derivatives, lipids, and organic acids. In addition, the secondary metabolites, including flavonoids, phenolic acids, and terpenoid, were analysed. The results showed that there was a significant difference in the relative content of non-volatile metabolites between the two. We detected a total of 914 non-volatile metabolites, of which 834 were detected in loquat nectar and 759 in loquat honey. We analyzed the relative content of metabolites based on their classification and found that the relative content of primary and secondary metabolites showed different trends after processing by bees. Among them, the content of nucleotides and their derivatives and sugar metabolites in loquat honey was generally higher than that in loquat honey. This result presents a comprehensive picture of the non-volatile metabolite composition of loquat nectar and loquat honey, and systematically compares the changes in the relative content of the two substances.
    Keywords:  Eriobotrya japonica Lindl.; Flavonoids; Honey; Loquat; Nectar; Phenolic acids; UPLC-MS/MS
    DOI:  https://doi.org/10.7717/peerj.19988
  40. Biomed Chromatogr. 2025 Nov;39(11): e70223
      Ginkgolide C (GC), a diterpene isolated from Ginkgo biloba leaves, exhibits significant cardiovascular protective activity. The comprehensive pharmacokinetics and metabolic profile of GC in vivo are unknown. In this study, a sensitive and robust LC-MS/MS method was first developed and validated for the determination of GC in rat plasma. The procedure necessitated only 10 μL of rat plasma and involved a protein precipitation process with acetonitrile. Chromatographic separation was achieved on a Waters Acquity UPLC BEH C18 column (2.1 × 100 mm, 1.7 μm) through gradient elution with a mobile phase composed of acetonitrile and water containing 0.1% formic acid. The MS detection was conducted in negative multiple reactions monitoring mode. The method was extensively validated including specificity, sensitivity, intraday and interday accuracy and precision, dilution, carryover, and stability according to the guidelines over the concentration range of 2-5000 ng/mL. The method was subsequently applied to the pharmacokinetic study of GC in rats after intravenous and oral administration. After intravenous administration, GC showed moderate clearance (1816.86 mL/h/kg) with a terminal elimination half-life (t1/2) of 0.95 h. The volume of distribution (Vss) is 1038.83 mL/kg. After oral administration at doses of 10, 20, and 40 mg/kg, GC was quickly absorbed into the plasma and reached the peak concentration at 0.5 h. The systemic exposure of GC increased with dose dependent up to 40 mg/kg with low oral bioavailability (4.91%-6.80%). In addition, a total of 14 metabolites were detected and identified in rat plasma, urine, and feces. The biotransformation pathways were tentatively identified as oxidation, dehydrogenation, hydrogenation, hydrolysis, methylation, and sulfate conjugation. The pharmacokinetics and metabolic characteristics of GC were expounded in this study, which provided a solid foundation for in-depth development.
    Keywords:  Ginkgolide C; bioavailability; metabolism; pharmacokinetics
    DOI:  https://doi.org/10.1002/bmc.70223
  41. Anal Chem. 2025 Sep 22.
      Accurate quantification of deuterium (D) atomic fractions is fundamental to a wide range of scientific and technological applications involving hydrogen isotopes. This study introduces a novel analytical method for accurately estimating deuterium (D) atomic fractions using quadrupole mass spectrometry (QMS). The method is specifically optimized for low D concentrations and effectively overcomes isobaric ion interference, which often limits the accuracy of conventional QMS-based analysis. Validation experiments were conducted based on liquid-phase catalytic exchange (LPCE) processes and density meter (DM) measurements. The developed method achieved an absolute error of 1.85% at a D concentration of 5%, with even lower errors observed at lower concentrations. The proposed approach enables real-time, cost-effective monitoring of D atomic fractions, providing a reliable tool for hydrogen isotope analysis.
    DOI:  https://doi.org/10.1021/acs.analchem.5c04508
  42. Biomolecules. 2025 Sep 01. pii: 1264. [Epub ahead of print]15(9):
      Crustaceans are particularly sensitive to copper toxicity, and although the downstream effects of increased copper exposure on the metabolome are often postulated and observed, they are rarely measured. To perform absolute quantification of hydrophilic small-molecule metabolites in the hemolymph of the crustacean Cancer borealis, we derivatized targeted metabolites related to copper toxicity using in-house-developed isotopic N,N-dimethyl leucine (iDiLeu) tags. Selected analytes were pooled at previously determined concentrations to serve as internal standards, and a calibration curve was generated. The sample loss was minimized by optimizing the derivatization-assisted sample cleanup using dispersive liquid-liquid microextraction (DLLME) and hydrophilic-lipophilic balancing (HLB). Calibration curves were then used for the absolute quantification of metabolites of interest following 30 min, 1 h, and 2 h exposures to 10 µM CuCl2. We found that glutamic acid was downregulated after 2 h of copper exposure, which may disrupt cellular metabolism and increase oxidative stress in crustaceans. These changes could have significant impacts on crustacean populations and the ecosystems they support.
    Keywords:  absolute quantification; hemolymph; sample preparation
    DOI:  https://doi.org/10.3390/biom15091264
  43. J Sep Sci. 2025 Sep;48(9): e70282
      1-Methyl-9-(3-pyridinylmethyl)-9H-pyrido[3,4-b] indole (HMYB) is a novel semi-synthetic alkaloid derived from β-carboline harmane, which has been proven to be effective in treatment of encopresis. But the pharmacokinetic characteristics of HMYB were not yet illustrated. In this study, three metabolites (harmane, harmol, and 7-OH-HMYB) of HMYB were isolated from rat urine after oral administration of HMYB and authenticated with nuclear magnetic resonance spectroscopy and high-resolution mass spectrometry. Most significantly, HMYB and its three metabolites were simultaneously quantified accurately in rat plasma using a quick, sensitive and selective UHPLC-MS/MS method. On an ACQUITY UPLC BEH C18 column (2.1 × 50 mm, 1.7 µm), the analytes and internal standard (osalmid) were separated by gradient elution using acetonitrile and water containing 0.1% formic acid at a flow rate of 0.4 mL/min. The mass spectrometry detector was used in positive ionization mode for multiple reaction monitoring. The method showed good linearity over the concentration range of 0.5-500 ng/mL for HMYB and three metabolites. The method was applied to the pharmacokinetic study of HMYB and its three metabolites after oral doses of HMYB (25, 50, and 100 mg/kg) and intravenous administration of 0.5 mg/kg in rats. Pharmacokinetic differences between HMYB and its three metabolites were determined, along with the absolute bioavailability of HMYB. These results would be helpful in understanding the efficacy of HMYB. The results will also contribute to providing guidance for the structural modification of more effective semi-synthetic derivatives.
    Keywords:  bioavailability; method validation; pharmacokinetics; structural authentication
    DOI:  https://doi.org/10.1002/jssc.70282
  44. Rapid Commun Mass Spectrom. 2025 Dec 30. 39(24): e10139
       RATIONALE: As contamination of perfluoroalkyl and polyfluoroalkyl substances (PFAS) in the environment becomes better understood, it is increasingly important to develop forensic tools capable of tracing contamination to emission sources. Isotopic methods have been previously inaccessible for PFAS due to limitations of the instrumentation, but high-pressure liquid chromatography (HPLC) coupled to Orbitrap mass spectrometry (Orbitrap MS) through electrospray ionization (ESI) allows measurement of the isotopic composition of individual PFAS compounds, such as perfluorooctanoic acid (PFOA).
    METHODS: Six separate supplier-procured powders of PFOA were analyzed for their δ13C isotopic composition by microflow-HPLC-ESI-Orbitrap MS.
    RESULTS: The method presented replicated, within error, the δ13C values measured using an elemental analyzer-isotope ratio mass spectrometer (EA-IRMS) for the six different supplier-procured PFOA powders. The offset from the EA-IRMS values for repeated analysis was between 0.2‰ and 1.1‰ and the error was between 0.8‰ and 1.5‰. Our Orbitrap-MS method requires approximately 0.04% of the material required to make an EA-IRMS measurement.
    CONCLUSIONS: We developed a method capable of measuring the carbon isotopic composition of PFOA, using HPLC-Orbitrap MS, with high precision and accuracy. This will allow future research to expand analytical capabilities for additional isotopologues of PFOA and other PFAS compounds.
    Keywords:  Orbitrap; PFAS; isotopes
    DOI:  https://doi.org/10.1002/rcm.10139
  45. Int J Mol Sci. 2025 Sep 11. pii: 8864. [Epub ahead of print]26(18):
      Mitochondria are essential organelles for cellular energy production, playing a central role in driving metabolic processes and supporting critical intracellular functions. Neurometabolic disorders encompass a wide variety of conditions characterized by mitochondrial dysfunction. Owing to their bacterial ancestry, mitochondria possess an independent genome consisting of a circular DNA molecule (mtDNA), which has been reported to be subject to methylation. However, the technical challenges in the detection of mtDNA methylation have led to debates on its existence. One of the concerns is that the compactness of mtDNA can lead to suboptimal bisulfite conversion, thereby causing mtDNA methylation overestimation. To address this, liquid chromatography tandem mass spectrometry (LC-MS/MS) offers a bisulfite-independent readout; however, this method requires mtDNA samples devoid of nuclear DNA (nDNA) contamination. To diminish nDNA contamination, we isolated mtDNA from the TRIzol RNA phase. Importantly, pyrosequencing showed no significant difference in the methylation levels of mtDNA isolated from the TRIzol RNA phase compared to those from the TRIzol DNA phase, or isolated via total genomic DNA (gDNA). Across different human cell lines, LC-MS/MS detected significantly lower global methylation levels for DNA isolated from the TRIzol RNA phase than those from the TRIzol DNA or gDNA isolation. Moreover, using mtDNA isolated from the TRIzol RNA phase, LC-MS/MS validated the enhanced mtDNA methylation in HepG2 transgenic cell lines expressing mitochondrial-targeted DNA methyltransferases (means of 2.89% and 2.03% for MCviPI and MSssI transgenic cell lines, respectively), compared to two negative control cell lines (1.36 and 1.39%). When applying it to clinically relevant material, LC-MS/MS demonstrated a significantly lower global methylation level for platelet DNA isolated from the TRIzol RNA phase (mean of 1.98%) compared to gDNA isolations (mean of 4.32%). Similar findings were confirmed in mouse brain tissue, in which a significantly lower methylation level was detected in DNA isolated from the TRIzol RNA phase (1.79%) compared to that from gDNA isolation (5.12%). In conclusion, isolating mtDNA from the TRIzol RNA phase holds significant potential in future studies, particularly for the quantification of mtDNA global methylation by LC-MS/MS, a technique that is independent of bisulfite conversion and bioinformatic analysis.
    Keywords:  LC-MS/MS; TRIzol RNA phase; mitochondrial DNA methylation; neurometabolic disorders; nuclear DNA
    DOI:  https://doi.org/10.3390/ijms26188864
  46. Int J Mass Spectrom. 2025 Nov;pii: 117499. [Epub ahead of print]517
      Acquiring accurate and reproducible data is crucial for analytical chemists, however, sample storage and manipulation play a large role in achieving high-quality results. Autosampler vials and small-volume inserts are used for sample preparation and storage prior to mass spectrometry analyses, however, the utility, design, and material of these vary greatly. Here, we assessed differences in data reproducibility, sample loss, and physical differences among vials and inserts made of glass and polypropylene for combinations (vial/insert): glass/glass (GG), glass/polypropylene (GP), polypropylene/glass (PG), and polypropylene/polypropylene (PP). Six per- and polyfluoroalkyl substances (PFAS) were evaluated in 40:60 methanol:water with 3 mM ammonium acetate for 32 days to determine peak area reproducibility over time since PFAS do not degrade, therefore changes would most likely be due to adhesion and evaporation. On Day 1, the measured average peaks areas for the 6 PFAS were not statistically significant between any combinations, however, PP was the least reproducible (relative standard deviation >10%). All samples were then recapped and stored for one month at -20°C and reanalyzed to compare the peak areas between Day 1 to Day 32. All combinations showed >10% differences in peak area for at least 4 PFAS and both evaporation and adhesion were observed. While the greatest effects due to adhesion occurred in the glass inserts, the glass vials showed the least volume loss to evaporation. Thus, when adhesion and evaporation are considered together, the GP combination is recommended for PFAS analyses as the glass vial reduces evaporation rates, and the polypropylene insert minimizes adhesion.
    Keywords:  Autosampler Vial; Long-Term Storage; Mass Spectrometry; PFAS; Per- and polyfluoroalkyl substances
    DOI:  https://doi.org/10.1016/j.ijms.2025.117499
  47. Molecules. 2025 Sep 11. pii: 3695. [Epub ahead of print]30(18):
      Dried matrix spot (DMS) techniques have gained increasing attention in bioanalytical and forensic toxicology for the detection of opiates and opioids, offering minimally invasive sampling, enhanced sample stability, and simplified storage and transport. This review provides a critical overview of recent methodological advances and applications of DMS across multiple biological matrices, including blood, plasma, urine, and oral fluid. Particular focus is given to sample preparation protocols, extraction strategies, analytical instrumentation, and method performance. Dried blood spots (DBS) remain the most established format; however, alternative matrices such as dried plasma, urine, and saliva spots (DPS, DUS, DSS) are expanding the scope of DMS, particularly in decentralised and point-of-care contexts. Despite clear advantages, such as reduced biohazard risk and compatibility with high-throughput workflows, several limitations persist, including low sample volumes, matrix-specific recovery issues, and lack of standardised procedures. Future efforts should aim to optimise paper substrates, improve solvent-matrix compatibility, and integrate DMS workflows with automated or miniaturised mass spectrometry platforms. Overall, DMS techniques represent a versatile and evolving analytical platform with strong potential for reliable opioid monitoring in both clinical and forensic settings.
    Keywords:  bioanalytical; dried matrix spots; drug monitoring; opiates; opioids
    DOI:  https://doi.org/10.3390/molecules30183695
  48. MedComm (2020). 2025 Oct;6(10): e70395
      Salivary metabolomics is increasingly recognized as a powerful, noninvasive approach for studying human health and disease. Unlike blood or urine, saliva is easily accessible, minimally invasive, and suitable for repeated sampling. Advances in nuclear magnetic resonance, mass spectrometry, capillary electrophoresis, and bioinformatics have improved the sensitivity and reproducibility of salivary metabolite profiling, enabling its use across diverse systemic diseases such as cancer, cardiovascular disorders, diabetes, viral infections, autoimmune diseases, and neurodegenerative conditions. Despite this progress, clinical translation is limited by variability in sampling, lack of standardized protocols, and insufficient large-scale validation. This review synthesizes recent developments in human salivary metabolomics, emphasizing disease-specific biomarkers and key applications in systemic disease diagnosis and monitoring. We also examine methodological and biological factors that influence data reliability, including collection methods, storage conditions, circadian rhythms, age, and host-microbiome interactions. Furthermore, integration of multiomics strategies, machine learning, and clinical registry data is discussed as a means to enhance biomarker discovery and translational potential. By addressing these challenges, salivary metabolomics can evolve into a reliable platform for noninvasive diagnosis, longitudinal disease monitoring, and personalized medicine, providing a valuable complement to blood-based diagnostics in precision healthcare.
    Keywords:  biomarkers; metabolic profiling; noninvasive diagnosis; salivary metabolomics; systemic diseases
    DOI:  https://doi.org/10.1002/mco2.70395
  49. Antibiotics (Basel). 2025 Sep 22. pii: 957. [Epub ahead of print]14(9):
      Background: Eravacycline exhibits potent activity against multidrug-resistant pathogens and holds promise for the management of hospital-acquired and ventilator-associated pneumonia (HAP/VAP). However, sensitive and robust bioanalytical methods to quantify eravacycline in human pulmonary epithelial lining fluid (ELF) for pharmacokinetic (PK) and pulmonary penetration studies in these infections remain limited. Methodology: A simple, rapid, and sensitive LC-MS/MS method was developed for the quantification of eravacycline in bronchoalveolar lavage fluid (BALF). Using urea as a volume normalizer, ELF concentrations were calculated from the eravacycline concentrations in BALF. This method was applied in a clinical study evaluating the pulmonary penetration after intravenous infusion in patients with HAP and VAP. Results: The developed LC-MS/MS method exhibited good linearity in the range of 1-200 ng/mL for quantifying eravacycline in BALF. In BALF, intra-day precision ranged from 1.4% to 6.0%, and inter-day precision from 1.6% to 9.9%, with accuracy between 98.0% and 102.4%. Matrix effects were within 97.4% to 107.6% for BALF samples from six different individuals, with extraction recoveries ranging from 103.5% to 107.2%. Stability studies demonstrated that eravacycline remained stable under various conditions, including storage at room temperature, freeze-thaw cycles, long-term (-70 °C) storage, and post-treatment handling. The method was successfully applied to clinical samples from four HAP or VAP patients, with measured eravacycline pulmonary penetration ratios of 4.29, 17.40, 5.22 and 4.70, indicating efficient pulmonary distribution. The measured eravacycline concentrations ranged from 0.0243 to 0.0436 μg/mL in BALF. The corresponding urea-corrected ELF concentrations ranged from 0.570 to 1.617 μg/mL. Conclusions: This study described a detailed and validated method for quantifying eravacycline concentrations in ELF from patients, providing a reliable analytical approach for investigating the pulmonary distribution of eravacycline.
    Keywords:  HAP/VAP; LC-MS/MS; epithelial lining fluid; eravacycline; pulmonary penetration
    DOI:  https://doi.org/10.3390/antibiotics14090957
  50. Methods Protoc. 2025 Sep 10. pii: 106. [Epub ahead of print]8(5):
      Biogenic amines (BAs) are nitrogenous compounds naturally present in protein-rich foods, whose accumulation may indicate spoilage and pose health risks. This study presents the development and validation of a rapid LC-MS/MS method for the simultaneous quantification of six BAs-putrescine (PUT), cadaverine (CAD), histamine (HIS), tyramine (TYR), spermidine (SPD), and spermine (SPM)-in meat products, without requiring derivatisation. Sample preparation was optimized to enhance extraction efficiency and reproducibility, using 0.5 M HCl and a double-centrifugation protocol to avoid matrix interference. Chromatographic separation was optimized using a C18 column and acidified ammonium formate/acetonitrile mobile phases. The method showed good linearity (R2 > 0.99), trueness between -20% and +20%, and acceptable precision (RSDr and RSDR ≤ 25%). Limits of quantification were established at 10 µg/g for all analytes. The method was applied to ten commercial meat samples, where PUT, TYR, and SPD were the most frequently detected amines. Although HIS and TYR levels were below toxicological thresholds for healthy individuals, one sample showed TYR levels potentially concerning for monoamine oxidase inhibitors -treated consumers. The Biogenic Amine Index (BAI) further supported product quality assessment, identifying early spoilage in selected cases. This method offers a rapid, robust and efficient tool for routine monitoring of BAs in meat products, supporting food safety and quality control initiatives.
    Keywords:  LC-MS/MS; biogenic amines; food safety; meat; quality control
    DOI:  https://doi.org/10.3390/mps8050106
  51. Crit Rev Anal Chem. 2025 Sep 21. 1-10
      Toxicity is a major problem for public health, across the world, with thousands of deaths happening each year, primarily in impoverished nations. Estimating the precise toxic substance that is responsible for the intoxication occurred and rendering accurate treatment is one of the most vital steps in healthcare. One type of toxin that is extremely dangerous to human health is pesticides. They may infiltrate the human body accidentally, purposefully, or through their line of work. These pesticides can cause symptoms ranging from minor skin rashes and vomiting to serious ones like impairing sperm quality, neural development, and conception rates. One such class of pesticides is the pyrethroids. Synthetic pyrethroids like cypermethrin cause various health issues such as numbness, itching, burning sensation, and in severe cases, loss of bladder, muscle weakness, salivation, shortness of breath and seizures. Several methods exist to determine and quantify cypermethrin that humans are exposed to. The review provides an up-to-date summary of analytical and extraction approaches for detecting cypermethrin residues, in human samples by simple methods like Thin Layer Chromatography (TLC) and by high end sensitive methods like Gas Chromatography-Mass Spectrometry (GC-MS), Gas Chromatography-Mass Spectrometry/Mass- Spectrometry (GC-MS/MS), Liquid Chromatography-Tandem Mass Spectrometry (LC-MS/MS), High Performance Liquid Chromatography (HPLC) and Immunoassay techniques. It also adds light to the various sample preparation and clean-up techniques with a brief section on major analytical challenges associated with cypermethrin estimation in human samples.
    Keywords:  Cypermethrin; enzyme linked immuno-sorbent assay; gas chromatography-mass spectrometry; high performance liquid chromatography; liquid chromatography-tandem mass spectrometry
    DOI:  https://doi.org/10.1080/10408347.2025.2560659
  52. Metabolites. 2025 Sep 08. pii: 597. [Epub ahead of print]15(9):
       BACKGROUND/OBJECTIVES: Cow's milk is a complex food, and research into its metabolome can provide information useful in the study of animal health, farming practices, food safety and the adulteration of milk. Comparative interlaboratory metabolic analysis is hampered by the lack of standardized methods-a requirement addressed in this study.
    METHODS: We studied the influence of the chromatography column and extraction solvent on the metabolites isolated during untargeted metabolomics.
    RESULTS: After studying fifteen columns and four extraction solvents, it was determined that an HILIC column offered the best compromise between retention time and separation of metabolites. Each extraction solvent covered a different area of the metabolome, only overlapping with previously annotated compounds. Extraction mixtures containing methanol tend to give better recovery.
    CONCLUSIONS: The choice of extraction solvent was crucial when looking at the difference between samples, but if interest lies only in previously annotated compounds, then there is little difference between the solvents.
    Keywords:  chromatography; metabolomics; milk; sample preparation
    DOI:  https://doi.org/10.3390/metabo15090597
  53. Bioinform Adv. 2025 ;5(1): vbaf186
       Motivation: Core fucosylation is a common type of glycosylation that plays a significant role in biological functions. Accurate identification of core fucosylated glycopeptides is challenging due to fucose migration phenomenon during mass spectrometry. By using glycopeptides from mouse brain with FUT8 knocked out as cases and core-fucosylated high-mannose glycans in normal mouse brain as controls, the phenomena are widely observed from mass spectrometry data. The relative intensities of 10 core-related characteristic ions are used jointly as a feature vector, and a semisupervised model and a self-supervised model are developed in the feature space with robustness of the models studied.
    Results: Experimental results show that both models perform well, with the former superior to the latter, reaching 99.95% identification accuracy on an independent mouse brain data with FUT8 knocked out. By applying the models to wild-type mouse brain, human IgG and human serum, their dominant abundance of core fucose and/or noncore fucose are found, which is trustworthy since the effect of fucose migration is dealt with. The study highlights the great significance of trustworthy data labeling, well-defined features, and machine learning/deep learning techniques in highly reliable, accurate, and robust identification of core fucose from high-throughput mass spectrometry data.
    Availability and implementation: The code for core fucose identification is freely available in https://github.com/yzy-010203/core_focuse_identification.
    DOI:  https://doi.org/10.1093/bioadv/vbaf186
  54. Anal Methods. 2025 Sep 23.
      Fast chemical analysis of pharmaceutical preparations is important for quality assurance, counterfeit drug detection, and consumer health. While quantitative methods such as high-performance liquid chromatography mass spectrometry (HPLC-MS) are powerful, there is a need for sustainable and environmentally friendly methods, which require less chemicals and produce less waste. Here, solvent-free ambient desorption/ionization (ADI) MS methods are attractive because they do not require time-consuming chromatography, produce little to no chemical waste, and, thus, contribute to green chemistry practice. In addition, sample throughput can be higher compared to HPLC-MS. In this study, a method for the direct analysis of single- and multi-agent drugs using a plasma-based ADI source (flowing atmospheric-pressure afterglow, FAPA) coupled to high-resolution (HR) MS was developed and optimized for best performance. The approach is rapid and requires analytes to be in solution (only a few μL) before application onto thin-layer chromatography (TLC) surfaces, specifically dimethyl (RP2-) and cyano (CN-) modified silica, for surface-assisted (SA) FAPA-HRMS measurements. No chromatographic separation was required, and the TLC plates served only as sample carriers. A broad variety of 19 active pharmaceutical ingredients (APIs) was carefully selected to cover analgesics, anesthetics, antibiotics, antiepileptics, calcium channel blockers, diuretics, expectorants, opioids, peripheral vasodilators, stimulants, and sympathomimetics. Fast screening and identification of APIs were performed by SA-FAPA-HRMS. Typically, the protonated molecular ion ([M + H]+) was the most abundant species, while some compounds (codeine, metamizole, phenoxymethylpenicillin, and torasemide) did show some degree of fragmentation. As a proof-of-principle application, benzocaine was directly detected in saliva samples post-intake of a lozenge. Time-resolved semi-quantitative screening was performed. The limit of detection for benzocaine in saliva was 8 ng mL-1 (48.4 fmol) using internal standard calibration and CN-HPTLC plates. In addition, direct quantification of artificially spiked saliva was performed with minimal sample preparation. Here, SA-FAPA-HRMS with a CN-HPTLC sample substrate yielded the best performance (20.02 ± 0.52 μg mL-1, RSD = 2.6%, and deviation of -1.9% from the theoretical value) compared to RP2-TLC (18.97 ± 1.37 μg mL-1 and RSD = 7.2%, -7.0%), and HPLC-UV (18.51 ± 0.03 μg mL-1 and RSD = 0.2%, -9.3%) results. In conclusion, SA-FAPA-HRMS is considered attractive for rapid and sustainable analysis of pharmaceuticals with potential in non-invasive patient monitoring.
    DOI:  https://doi.org/10.1039/d5ay01050k
  55. J Am Soc Mass Spectrom. 2025 Sep 26.
      The inherent heterogeneity of biological macromolecules offers a unique challenge for analysis. The combination of ion mobility (IM) and mass spectrometry (MS) is sensitive to the size, shape, and dynamics of, for example, proteins and their complexes. Combining multiple dimensions of ion mobility and mass spectrometry (IM-IM-MS) while leveraging unique gas-phase manipulations between dimensions has great potential for increasing the information content for challenging analytes. Here, we introduce an instrument, SLIMPHONY, which was built using the Structures for Lossless Ion Manipulations (SLIM) architecture. SLIMPHONY is unique in that eight independently controlled traveling-wave regions work in concert to enable complex, multidimensional separations. Single-dimension IM-MS experiments were used to separate a mixture of protein and protein-complex ions and demonstrate that the peak-to-peak resolution increases roughly with the square root of the separation length for a pair of hexakis(fluoroalkoxy)phosphazine ions. Ion selection and trapping between dimensions was then used to probe the gas-phase unfolding of a subpopulation of ubiquitin ions. Finally, by varying the guard potential used to confine ions, we demonstrate tunable activation of ubiquitin subpopulations, which we analyzed using IM separations of various lengths. With the ability to select and activate ions in multiple regions, to vary the number of dimensions of IM, and to control the length of IM separation, SLIMPHONY is a flexible platform for characterizing protein ions.
    DOI:  https://doi.org/10.1021/jasms.5c00217
  56. Isotopes Environ Health Stud. 2025 Sep 23. 1-5
      Online liquid chromatography (LC) followed by isotope ratio mass spectrometry (IRMS) is a trusted technique to detect honey adulteration based on the stable carbon isotope composition (δ13C) of trisaccharides, disaccharides, glucose and fructose. However, LC-IRMS demands specialised analytical setups not commonly found in most isotope labs. Here we investigate the use of off-line LC followed by elemental analysis (EA)-IRMS as an alternative employing more commonly available instruments. Precision and accuracy were excellent for fructose and glucose (error < 0.1 mUr), but less so for disaccharides and trisaccharides, which are similar results to online LC-IRMS. Therefore, offline LC-EA-IRMS can be a viable alternative for the analysis of honey purity employing stable carbon isotopes.
    Keywords:  Carbohydrates; elemental analysis; honey; liquid chromatography; stable isotopes
    DOI:  https://doi.org/10.1080/10256016.2025.2559196