bims-imseme Biomed News
on Immunosenescence and T cell metabolism
Issue of 2026–10–18
fifty-two papers selected by
Pierpaolo Ginefra, Ludwig Institute for Cancer Research



  1. J Immunol. 2026 Oct 01. pii: vkag187. [Epub ahead of print]215(10):
      CD8+ T cells directly target and kill cancer cells and are required for effective antitumor immunity. However, CD8+ T cells may become dysfunctional when exposed to chronic antigen stimulation during cancer. Dysfunction is characterized by reduced proliferation, increased expression of inhibitory receptors, and impaired effector function, yet the genetic mechanisms controlling dysfunction remain poorly understood. Therefore, we developed a murine ex vivo chronic stimulation model that recapitulates features of CD8+ T cell dysfunction observed within the tumor microenvironment. By coupling this system with genome-wide CRISPR-Cas9 loss-of-function screening, we discovered that the progression of murine CD8+ T cells to a dysfunctional state required eIF4G2, a noncanonical mRNA translation factor. Deletion of eIF4G2 restored CD8+ T cell survival and proliferation during chronic stimulation conditions in vitro. Transcriptomic, proteomic, and flow cytometric analyses revealed that eIF4G2 deletion shifts CD8+ T cell phenotype from a dysfunctional state to a proliferative state. eIF4G2 depletion reduced oxidative stress, lipid peroxidation, and accumulation of misfolded protein aggresomes during chronic in vitro stimulation. Finally, eIF4G2-depleted cells mediated enhanced tumor control in a murine model of melanoma. These data suggest that targeting eIF4G2 may promote CD8+ T cell resilience and improve therapeutic antitumor immunity.
    Keywords:  T cell; adoptive cell therapy; immunotherapy; tumor microenvironment; tumor-infiltrating lymphocyte
    DOI:  https://doi.org/10.1093/jimmun/vkag187
  2. Nat Immunol. 2026 Oct 14.
      Most patients with solid tumors fail to sustain antitumor immunity, in part because immune cells cannot outcompete cancer cells inside the immunosuppressive tumor microenvironment. Here, we show the lipid-sensing transcription factor PPARδ is a compartment-specific determinant of cancer-immune fitness balance and immunotherapy efficacy. Activating PPARδ in cancer cells promotes their growth and impairs antitumor immunity, whereas activating it in immune cells drives tumor suppression and overrides tumor-promoting effects of cancer-intrinsic activation. Mechanistically, PPARδ enhances CD8+ T cell fitness against cancer through effector-associated chromatin remodeling and Cpt1a-mediated fatty acid oxidation. Therapeutically, PPARδ-activated CD8+ T cells sensitize immunotherapy-resistant microsatellite stable metastatic colorectal cancer to checkpoint blockade in mice, and pharmacological or genetic PPARδ activation enhances human chimeric antigen receptor T cell function. These findings identify compartment-specific PPARδ activity as a targetable driver of immune cell fitness that can be harnessed to improve outcomes in immunotherapy-resistant tumors.
    DOI:  https://doi.org/10.1038/s41590-026-02685-2
  3. Transplant Cell Ther. 2026 Oct 14. pii: S2666-6367(26)00798-0. [Epub ahead of print]
      Graft-versus-host disease (GVHD) is a common and severe complication following allogeneic hematopoietic stem cell transplantation (allo-HSCT). It is caused by activated alloreactive T cells that attack recipient target organs and represents a major cause of non-relapse mortality, thereby limiting the efficacy of allo-HSCT. Persistent alloantigen stimulation can induce metabolic dysregulation in T cells, involving pathways such as glycolysis, lipid metabolism, amino acid metabolism, nucleotide metabolism, and mitochondrial oxidative phosphorylation. Given the close relationship between T cell metabolism and T cell activation, differentiation, and effector functions, targeted modulation of T cell metabolism may emerge as a novel strategy for the prevention and treatment of GVHD. This review summarizes the roles of major T cell metabolic pathways in the pathogenesis and progression of GVHD with the aim of informing future mechanistic studies and therapeutic strategies.
    Keywords:  Graft-versus-host disease; T cell metabolism; allo-HSCT
    DOI:  https://doi.org/10.1016/j.jtct.2026.10.010
  4. Clin Sci (Lond). 2026 Nov 11. 140(11): 2363-2385
      Immune cell function is tightly coupled to cellular metabolism, with glycolysis, oxidative phosphorylation, and amino acid and lipid metabolism governing activation, differentiation, survival, and effector responses. In rheumatoid arthritis (RA), an autoimmune disease characterized by destructive joint inflammation, metabolic checkpoints have emerged as critical regulators of immune-cell behavior and drivers of tissue pathology. RA CD4+ T cells undergo profound metabolic reprogramming: glycolysis is suppressed, and glucose is redirected into the pentose phosphate pathway, resulting in NADPH accumulation, reduced ROS levels, and a highly reductive intracellular environment. Concurrent defects in mitochondrial DNA repair and electron transport chain function compromise mitochondrial fitness, leading to NAD+ depletion, altered tricarboxylic acid cycle activity, and metabolic exhaustion. The resulting accumulation of citrate and acetyl-CoA promotes lipogenesis and protein acetylation, driving membrane remodeling, tissue invasiveness, and proinflammatory effector functions. Depletion of oxaloacetate and aspartate limits NAD+ regeneration, inducing endoplasmic reticulum expansion and enhanced tumor necrosis factor production. Defective lysosomal coordination of AMPK and mTORC1 signaling uncouples energy sensing from anabolic programs, enabling cellular activation and proliferation despite metabolic insufficiency. Macrophage fate and function are similarly shaped by metabolic state. In synovial macrophages, GLUD1-dependent glutamine oxidation sustains mitochondrial respiration and ATP production, enabling survival under nutrient-deprived conditions while promoting antigen presentation. Conversely, metabolic stress in MerTK+ macrophages activates the NAD+ hydrolase SARM1, triggering NAD+ depletion, mitochondrial collapse, and PANoptotic cell death. Together, these findings identify NAD+ availability, mitochondrial fitness, and organelle-based signaling as central metabolic gatekeepers linking bioenergetic stress to immune-cell dysfunction and chronic inflammation in RA.
    Keywords:  T-cells; glycolysis; lysosomes; mitochondria; oxidative phosphorylation; rheumatoid arthritis
    DOI:  https://doi.org/10.1042/CS20250834
  5. Biomark Res. 2026 Oct 16. pii: 142. [Epub ahead of print]14(1):
      Immune checkpoint blockade (ICB) therapy has achieved clinical progress in various malignancies, yet primary and acquired resistance limits its efficacy in solid tumors. Myeloid cells in the tumor microenvironment (TME), including tumor-associated macrophages (TAMs), tumor-associated neutrophils (TANs), and myeloid-derived suppressor cells (MDSCs), undergo metabolic reprogramming under hypoxia and nutrient stress. They impair effector T cell function and may contribute to exhaustion-associated states via nutrient competition, release of toxic metabolites, and formation of physical barriers, representing a critical resistance mechanism. This review summarizes the spatiotemporal heterogeneity of myeloid cells and the metabolic networks underlying their immunosuppressive phenotypes, focusing on dysregulated lipid and cholesterol metabolism, amino acid remodeling, the glycolytic switch, and subcellular stress responses. We analyze how metabolic dysregulation causes T cell dysfunction and, in defined contexts, contributes to exhaustion-associated transcriptional programs through nutrient competition, toxic metabolite accumulation, and upregulation of inhibitory receptor ligands, and summarize intervention strategies targeting myeloid recruitment, phenotypic remodeling, metabolic reprogramming, and pathological structures combined with ICB. We discuss challenges of efficacy heterogeneity and safety in clinical translation, and highlight the prospects of multi-omics and computational biology in guiding next-generation combination immunotherapy. Understanding myeloid metabolic plasticity may provide a basis for overcoming immunotherapy resistance and establishing precise synergistic strategies.
    Keywords:  Combination immunotherapy; Immune checkpoint inhibitors; Metabolic reprogramming; Myeloid cells; T cell dysfunction; T cell exhaustion; Tumor microenvironment
    DOI:  https://doi.org/10.1186/s40364-026-01011-0
  6. bioRxiv. 2026 Sep 28. pii: 2026.09.25.754422. [Epub ahead of print]
      Chronic or persistent T cell activation is widely thought to culminate in T cell exhaustion, yet how autoreactive CD8⁺ T cells remain functionally intact despite sustained self-antigen exposure is poorly understood. In chronic infection and cancer this durability is attributed to stem-like, TCF1⁺ PD-1⁺ progenitor-exhausted (Tpex) cells that reside in lymphoid tissue and continuously replenish functional effectors; whether such a reservoir operates within a chronically inflamed peripheral organ during sterile autoimmunity is unknown. Here we show that mice lacking the lysosomal nuclease DNase2a together with the type I interferon receptor Ifnar1 ( Dnase2a⁻/⁻Ifnar1⁻/⁻ ) develop spontaneous, progressive hepatic inflammation. This hepatitis was dependent on the endosomal DNA sensor TLR9, identifying self-DNA as the initiating ligand. Inflammation was marked by expansion of inflammatory macrophages and accumulation of CD8⁺ T cells co-expressing PD-1 and TOX that retained, rather than lost, effector function. Paired single-cell TCR and transcriptomic analysis revealed progenitor-exhausted T cells within the liver itself that shared clonotypes with clonally expanded PD-1 + TOX + T cells, defining a locally operating progenitor-to-effector pipeline. Spatial transcriptomics positioned these intrahepatic T cell clusters adjacent to IL-27-expressing inflammatory macrophages, and disruption of IL-27 or its receptor in bone marrow-derived cells reduced PD-1⁺ CD8⁺ T cells and their effector functions. These findings define a novel mechanism for sustaining autoreactive T cells in the liver via TLR9-driven macrophage-induced IL-27 circuit that sustains a functional, self-renewing autoreactive PD1 + CD8⁺ T cell program in situ.
    DOI:  https://doi.org/10.64898/2026.09.25.754422
  7. bioRxiv. 2026 Sep 28. pii: 2026.09.22.747582. [Epub ahead of print]
      Pathogenic T helper 17 (pT H 17) cells are a subset of CD4 + T cells driving autoimmune diseases including multiple sclerosis (MS). Compared to homeostatic T H 17 cells and other T H subsets, pT H 17 have enhanced mitochondrial function and oxidative phosphorylation (OXPHOS) that supports their differentiation and pathogenic function. Here we identify Copper Transporter 1 (CTR1), encoded by Slc31a1, as essential for copper uptake in CD4 + T cells, OXPHOS and pT H 17 cell differentiation and function. While copper levels are known to be higher in the cerebrospinal fluid of patients with MS compared to healthy individuals, and excess copper contributes to oligodendrocyte loss in murine models of MS, the effect of copper on T cell function and pathogenicity in MS are unclear. We demonstrate that deletion of Slc31a1 in CD4 + T cells decreased intracellular copper levels, disrupting mitochondrial respiration and rewiring metabolism. These changes altered the epigenetic landscape of pT H 17 cells by impairing DNA demethylation capacity, leading to hypermethylated DNA and altered chromatin accessibility at key binding sites for AP-1 transcription factors essential for pT H 17 differentiation. As a result, CTR1-deficient T cells showed defective differentiation into pT H 17 cells, with decreased production of IL-17A and expression of T H 17 signature genes, while the differentiation of other CD4 + T cell subsets remained largely unaffected. Moreover, T cell-specific deletion of Slc31a1 protected mice from central nervous system (CNS) inflammation in the experimental autoimmune encephalomyelitis (EAE) model of MS by suppressing clonal expansion of autoreactive CD4 + T cells. These findings establish copper as a critical regulator of pT H 17 differentiation and function, revealing a previously unknown molecular link between copper homeostasis, metabolism and epigenetic regulation governing pT H 17-mediated autoimmunity.
    DOI:  https://doi.org/10.64898/2026.09.22.747582
  8. Expert Rev Mol Med. 2026 Oct 15. 28 e45
       BACKGROUND: Immune-related diseases contribute substantially to global morbidity and mortality. CD8+ T cells play a critical role in adaptive immunity by eliminating virus-infected and malignant cells. The biology of CD8+ T cells is governed by tightly regulated gene expression programs, and disruption of these programs can lead to diverse immunopathologies and malignancies. This article evaluates our current understanding of post-transcriptional and translational regulation of gene expression in CD8+ T cells by RNA-binding proteins.
    METHODS: Relevant and up-to-date literature was critically analysed to gain mechanistic insights into the roles of RNA-binding proteins in CD8+ T cell biology and to identify key knowledge gaps and future directions, with particular emphasis on therapeutic implications.
    RESULTS: RNA-binding proteins regulate diverse aspects of CD8+ T cell biology, including differentiation, cytokine production, stress adaptation and proliferation. Recent studies further reveal how dysregulated expression and function of RNA-binding proteins contribute to hyperinflammation and haematological malignancies.
    CONCLUSIONS: RNA-binding proteins are emerging as key post-transcriptional and translational checkpoint regulators of CD8+ T cell biology and represent promising therapeutic targets for immune-related diseases; however, substantial mechanistic and disease-specific studies, as well as rigorous translational validation, are required before RNA-binding protein-targeted therapeutic strategies can be safely and effectively advanced into clinical practice.
    Keywords:  CAR-T cell immunotherapy; CD8+ T cells; RNA-binding proteins; immunological memory; post-transcriptional regulation of gene expression; tumour-infiltrating lymphocytes
    DOI:  https://doi.org/10.1017/erm.2026.10075
  9. Cancer Immunol Res. 2026 Oct 15.
      T-cell exhaustion limits durable antitumor responses and remains a barrier to adoptive cell therapies (ACT) in solid tumors. To identify regulators of T-cell persistence, we performed genome-wide CRISPR knockout screens in primary human CD8⁺ T cells expressing an NY-ESO-1-specific T-cell receptor and subjected them to repeated tumor cell rechallenge. These screens revealed enrichment of single-guide RNAs targeting components of Cullin-RING E3 ligases, particularly Cullin-5 (CRL5) assemblies comprising CUL5, RNF7, and ARIH2. Disruption of CRL5 genes in T cells preserved cytotoxic activity and enhanced cytokine production while sustaining effector-associated transcriptional programs and suppressing exhaustion-related signatures. Pharmacologic inhibition of cullin neddylation with the NEDD8-activating enzyme inhibitor MLN4924 recapitulated CRL5 loss and enhanced T-cell effector function in vitro. In a human melanoma xenograft model, ACT with CRL5-deficient T cells improved tumor control. Together, these findings identify CRL5 as a negative regulator of T-cell fitness and a potential therapeutic target to enhance ACT durability in solid tumors.
    DOI:  https://doi.org/10.1158/2326-6066.CIR-26-0181
  10. Sci Adv. 2026 Oct 16. 12(42): eaei0840
      T cell exhaustion is often viewed as a terminal state marked by irreversible loss of function during chronic infection and cancer. However, the rapid recovery of antitumor activity in clinical responders after PD-1 blockade suggests that some exhausted T cells retain hidden functional potential. To explain this paradox, we present a theoretical framework that separates latent effector capacity from active effector function. Latent effector capacity represents a history-dependent state reflecting preserved epigenetic accessibility and regulatory readiness, distinct from ongoing gene expression. In this model, PD-1 signaling acts as a reversible mask that suppresses effector function without eliminating the underlying effector capacity. The framework explains preserved chromatin accessibility, rapid reinvigoration after checkpoint blockade, and variable therapeutic responses. By incorporating nonlinear maintenance and erosion of latent effector capacity, the model predicts a bistable system with a point of no return beyond which exhaustion becomes irreversible. These principles may guide development of mechanistically informed biomarkers and artificial intelligence models predicting response to PD-1 therapy.
    DOI:  https://doi.org/10.1126/sciadv.aei0840
  11. iScience. 2026 Oct 16. 29(10): 117599
      Patients with acute-on-chronic liver failure (ACLF) have severe CD8+ T cell dysfunction. This study examined G protein-coupled receptor 82 (GPR82) in CD8+ T cell exhaustion in hepatitis B virus-related acute-on-chronic liver failure (HBV-ACLF). Using GEO analysis, clinical samples, GPR82 manipulation, transforming growth factor beta (TGF-β)/SMAD intervention, dual-luciferase assays, and a mouse hepatitis virus strain 3 (MHV-3) mouse model, we found GPR82 overexpression in ACLF liver and HBV-ACLF CD8+ T cells, correlating with T cell exhaustion. GPR82 knockdown enhanced CD8+ T cell function, while overexpression had opposite effects. Mechanistically, lysophosphatidylcholine (LysoPC) upregulated GPR82 transcription via TGF-β/SMAD1, and elevated GPR82 further activated TGF-β/SMAD, forming a positive feedback loop. In vivo, GPR82 knockdown partially restored CD8+ T cell function and alleviated liver injury in the MHV-3 mouse model. These findings indicate GPR82 promotes CD8+ T cell exhaustion via TGF-β/SMAD, and the LysoPC-GPR82 loop offers insight into ACLF immune dysfunction, suggesting GPR82 as a potential biomarker and therapeutic target.
    Keywords:  CD8⁺ T cells; GPR82; HBV-ACLF; LysoPC; TGF-β/SMAD signaling; cytokines
    DOI:  https://doi.org/10.1016/j.isci.2026.117599
  12. bioRxiv. 2026 Oct 01. pii: 2026.09.30.755147. [Epub ahead of print]
      CD8 T cells are key mediators of anti-tumor immunity, yet their differentiation states and clonal architecture within the acute myeloid leukemia (AML) bone marrow microenvironment remain incompletely defined. We performed high dimensional immune profiling of bone marrow samples from 46 newly diagnosed AML patients using mass cytometry to probe the microenvironment and T cell states. We used single-cell RNA and T cell receptor (TCR) sequencing to define CD8 T cell phenotypes, transcriptional states, and clonal architecture. AML-associated CD8 T cells were skewed toward terminally differentiated effector memory cells re-expressing CD45RA (TEMRAs), while canonically exhausted T cell populations were rare. Functional studies revealed that TEMRA CD8 T cells robustly produced IFNγ and TNFα upon in vitro stimulation. Clonal expansion was concentrated within the TEMRA compartment. Comparison of TCR sequences with known viral epitopes identified a small subset of expanded viral-specific clonotypes, while the majority of highly expanded clonotypes had unknown specificity and may include AML-specific T cells. Differential gene expression analysis revealed shared cytotoxic effector programs during clonal expansion but diverging activation signatures: viral-specific clones upregulated canonical T cell receptor signaling genes, whereas expanded clones of unknown specificity exhibited enrichment of natural killer (NK) receptor-associated genes. These genes comprised the leukemia-associated NK-immune (LaNKi) score which was elevated in an independent AML dataset compared to pan cancer tumor infiltrating lymphocytes. These findings define the CD8 T cell differentiation landscape and clonal architecture in AML marrow at diagnosis and suggest that T cell dysfunction in AML diverges from classical activation and exhaustion paradigms.
    Key points: CD8 T cells in AML are enriched for terminally differentiated states not defined by traditional checkpoint-inhibitor expression.The LaNKi score marks clonally expanded CD8 T cells of unknown specificity and is validated across independent AML and pan-cancer datasets.
    DOI:  https://doi.org/10.64898/2026.09.30.755147
  13. bioRxiv. 2026 Oct 03. pii: 2026.09.28.755064. [Epub ahead of print]
      Lymphocyte activation gene-3 (Lag3) is an inhibitory receptor that limits effector T cell activation and function. We previously demonstrated that Lag3 supports regulatory T (Treg) cell function through Myc-dependent metabolic reprogramming. However, the intracellular mechanisms underlying this regulation remain incompletely understood. Here, we generated mice with Treg-specific deletion of the Lag3 KIEELE motif and demonstrated that this motif is required for Treg-mediated suppression of autoimmune inflammation. Loss of the Lag3 KIEELE motif led to enhanced TCR/PI3K-Akt/MEK-ERK signaling and Myc expression, accompanied by increased glycolytic activity and acquisition of effector T cell-like features. We also identified that hematopoietic progenitor kinase 1 (HPK1) and Cbl-interacting protein of 85 kDa (CIN85) associate with Lag3 through the KIEELE motif. HPK1 depletion partially recapitulated the phenotypic changes and impaired Treg suppressive function in vivo. Together, these findings identify the KIEELE motif as a critical link between Lag3-associated signaling machinery and metabolic regulation that sustains Treg suppressive function during autoimmune inflammation.
    DOI:  https://doi.org/10.64898/2026.09.28.755064
  14. Nat Aging. 2026 Oct;6(10): 2057-2073
      Aging is characterized by progressive functional decline accompanied by distinct transcriptomic and epigenetic alterations. Although partial reprogramming via Yamanaka factors can reverse these signatures and improve cell function, toxicity and efficacy concerns limit their in vivo application, necessitating alternative geroprotective interventions. Here we develop an interpretable transcriptomic age predictor in human fibroblasts and perform a cDNA overexpression screen to identify factors that reprogram aged transcriptomes toward youthful states. This screen identifies the RNA-processing and splicing factor SRSF1 as a regulator of cellular aging that produces robust youthful transcriptional signatures without loss of cellular identity. In vitro, SRSF1 induction restores youthful phenotypes by reducing senescence, proteostatic stress and inflammatory signaling. In aged mice, inducible SRSF1 expression reduces frailty progression by 44% and is associated with a 14% extension of median lifespan (n = 9-10 per group). Our findings establish SRSF1 as a conserved regulator of aging and a promising geroprotective target.
    DOI:  https://doi.org/10.1038/s43587-026-01234-8
  15. Crit Rev Oncol Hematol. 2026 Oct 12. pii: S1040-8428(26)00534-2. [Epub ahead of print]228 105647
      Immunosenescence alters immune-cell composition, signaling, metabolism, and regenerative capacity, but chronological age alone does not reliably predict response to cancer immunotherapy. In older adults, thymic involution, hematopoietic remodeling, inflammaging, and the accumulation of dysfunctional lymphoid and myeloid populations interact with tumor-derived suppressive signals. We organize these processes within an Immunosenescence-Immunotherapy Interference Axis linking systemic immune aging, local tumor remodeling, and treatment-specific vulnerabilities. Evidence is reviewed for senescence-like and exhausted CD8 + T cells, NK-cell dysfunction, age-associated macrophage states, loss of T-cell receptor diversity, and their relationship to immune checkpoint blockade. We then assess blood, tissue, and single-cell biomarkers that may distinguish biological immune age from chronological age, with particular attention to the limitations of single-marker classification. Finally, we critically evaluate senolytics, cytokine support, co-stimulatory approaches, and metabolic modulation as potential adjuncts to immunotherapy. The available evidence supports biomarker-informed, age-adaptive trial design, but prospective validation is required before immune-rejuvenation strategies can be recommended in routine oncology.
    Keywords:  Aging; Biomarkers; Cancer immunotherapy; Immune age; Immunosenescence; Senolytics; Tumor microenvironment
    DOI:  https://doi.org/10.1016/j.critrevonc.2026.105647
  16. Exp Mol Med. 2026 Oct 16.
      Infection is a leading cause of mortality in patients with chronic kidney disease (CKD), in which T cell dysfunction is considered a typical feature. Although platelets are active participants in immune response, their role in regulating T cell function in patients with CKD remains unclear. In this study, we demonstrate that CD8+ T cell senescence may be a major contributor to the immunosuppressed state of patients with CKD, and that platelets derived from patients with CKD can induce premature CD8+ T cell senescence, potentially through mediating mitochondrial dysfunction. Further investigations reveal that platelet-derived microparticles (PMPs) from patients with CKD promote CD8+ T cell senescence via transferring miR-550a-5p, thereby decreasing PMPCB expression and inducing NDUFS8 cleavage failure. Finally, inhibition of miR-550a-5p and pretreatment with nicotinamide mononucleotide are capable of preventing platelet-induced CD8+ T cell senescence in CKD patients. Collectively, these findings suggest that the ectopic transient expression of platelet-derived miR-550a-5p in CD8+ T cells promotes cellular senescence by regulating the PMPCB-NDUFS8 axis, which can be exploited to treat CKD-associated immunosenescence.
    DOI:  https://doi.org/10.1038/s12276-026-01876-z
  17. Cancers (Basel). 2026 Oct 03. pii: 3202. [Epub ahead of print]18(19):
      Metabolic reprogramming is increasingly recognised as a central determinant of bladder cancer heterogeneity, immune regulation and treatment response. This review integrates genetic, epigenetic, microenvironmental and therapeutic evidence to explain how bladder cancer redistributes carbon and nitrogen across glycolysis, lipid synthesis and oxidation, amino-acid metabolism and mitochondrial respiration. Alterations in FGFR3, PIK3CA, MYC, TP53/RB1 and KDM6A establish distinct, context-dependent metabolic dependencies, while hypoxia, extracellular-matrix mechanics and treatment selection reinforce metabolic plasticity. These programmes influence not only energy production and biosynthesis but also ferroptosis, genome stability and chromatin or RNA regulation. Lactate, adenosine, kynurenine and asparagine further connect tumour metabolism to regulatory T cells, myeloid cells, innate immune sensing and CD8-positive T cell function, thereby shaping resistance to chemotherapy and immune-checkpoint blockade. Therapeutic opportunities include targeting glycolysis, fatty-acid and cholesterol metabolism, glutamine and proline metabolism, arginine auxotrophy and metabolite-mediated immune suppression. However, pathway redundancy, cellular heterogeneity and shared metabolic requirements between tumour and immune cells constrain unselected treatment. Urine, tissue, blood and imaging metabolomics offer complementary routes to diagnosis, prognostication and real-time response monitoring, but require harmonised sampling, functional flux measurements and prospective validation. A clinically useful strategy will therefore depend on defining metabolic vulnerabilities by genotype, cell type, spatial context and treatment stage, and on pairing pharmacodynamic biomarkers with rational combinations and local delivery where appropriate.
    Keywords:  biomarker; bladder cancer; chemotherapy; immunotherapy; metabolic reprogramming; pathogenesis
    DOI:  https://doi.org/10.3390/cancers18193202
  18. Immunol Cell Biol. 2026 Oct 16.
      Follicular helper T (Tfh) cells orchestrate germinal center (GC) derived humoral immunity by providing essential help to B cells. Despite their key role in humoral immunity, the metabolic cues that shape Tfh cell differentiation and functions in humans remain poorly understood. Here, using a human ex vivo Tfh cell differentiation model, we investigated the metabolic requirements of Tfh cell development and function through targeted metabolic perturbation of glycolysis and fatty acid metabolism, transcriptomic analyses, and metabolic rescue experiments. Unexpectedly, early glycolytic inhibition enhanced Tfh cell differentiation but markedly impaired function, including reduced IL-21 production and diminished B-cell help. Transcriptomic and metabolic analyses revealed that glycolytic inhibition was accompanied by suppression of fatty acid metabolism. Consistently, independent inhibition of fatty acid synthesis or oxidation suppressed Tfh cell help functions, including IL-21 and IFN-γ production, as well as B-cell help potential. Interestingly, acetate supplementation partially restored IFN-γ secretion in glycolysis-inhibited conditions, but not IL-21, indicating limited metabolic compensation. Together, these findings reveal distinct metabolic requirements for Tfh cell differentiation and function and identify glycolysis-dependent fatty acid metabolism as an important determinant of human Tfh cell functional competence. This metabolic crosstalk provides new insight into the regulation of Tfh cells and Tfh-driven humoral immunity in vaccination and autoimmunity.
    DOI:  https://doi.org/10.1111/imcb.70166
  19. Ageing Res Rev. 2026 Oct 10. pii: S1568-1637(26)00391-0. [Epub ahead of print]123 103399
      Aging is characterized by a progressive decline in cellular homeostasis accompanied by chronic, low-grade sterile inflammation, termed inflammaging, which contributes to the development of neurodegenerative, cardiometabolic, and neoplastic disorders. Although inflammaging represents a convergence point of multiple hallmarks of aging, the molecular networks linking these processes remain incompletely understood. Here, we propose the Aging Purinome as a systems-level framework describing the progressive, age-associated remodeling of extracellular purinergic signaling and its metabolic interfaces. This network encompasses extracellular nucleotides and nucleosides, nucleotide release and transport mechanisms, ectonucleotidases, P2X and P2Y receptors, adenosine receptors, and interconnected metabolic pathways. Available evidence indicates that aging alters extracellular ATP availability and produces receptor-, cell-, and tissue-specific changes across the P2X and P2Y receptor repertoire, together with dysregulation of the CD39-CD73-adenosine axis and increased CD38-dependent NAD + consumption. Among these pathways, P2X7-NLRP3 signaling represents a well-characterized mechanism linking extracellular ATP to sterile inflammation, but it constitutes only one component of a broader purinergic remodeling process. We discuss how these changes may influence mitochondrial dysfunction, cellular senescence, altered intercellular communication, impaired inflammatory resolution, and age-related diseases. We further examine exercise, nutritional approaches, and pharmacological modulation of purinergic and NAD + -related pathways as potential strategies to restore homeostatic signaling. The Aging Purinome is therefore proposed as an integrative framework for investigating how age-dependent changes in purinergic communication may contribute to inflammaging and as a testable basis for future mechanistic and translational studies.
    Keywords:  Age-related diseases; Aging Purinome; Cellular senescence; Extracellular ATP; Inflammaging; Mitochondrial dysfunction; Purinergic signaling
    DOI:  https://doi.org/10.1016/j.arr.2026.103399
  20. Front Immunol. 2026 ;17 1969351
      Tissue-resident memory T (TRM) cells persist at barrier and parenchymal sites where oxygen, nutrients, and inflammatory signals fluctuate. Their durability therefore cannot be explained by tissue retention alone. Evidence from skin, liver, intestine, lung, tumors, and inflamed tissues supports a coupled program in which local nutrient capture, mitochondrial fuel selection, organelle dynamics, autophagy, mitophagy, and proteostatic responses sustain survival while preserving rapid effector competence. We propose "organelle-niche matching" as a testable four-step working model: tissue inputs engage nutrient-, oxygen-, danger-, cytokine-, and antigen-sensing pathways; these regulate mitochondrial biogenesis, fusion-fission balance, respiratory-chain organization, and selective turnover; organelle state controls bioenergetic reserve, redox balance, apoptosis, and metabolite availability; and these outputs may reinforce or destabilize transcriptional residency and recall. The model integrates evidence across contexts, not one pathway established in a single TRM population. Direct TRM evidence is distinguished from tumor-infiltrating lymphocyte data and extrapolation from conventional memory CD8+ T cells. Lipid uptake and fatty-acid oxidation are prominent in selected TRM niches but are not universal, and mitophagy should not be equated with mitochondrial health. This framework identifies causal links already demonstrated in TRM cells, relationships that remain correlative, and therapeutic opportunities to strengthen protective residents without sustaining pathogenic populations.
    Keywords:  autophagy; fatty-acid oxidation; immunometabolism; mitochondria; mitophagy; persistence; tissue niche; tissue-resident memory T cells
    DOI:  https://doi.org/10.3389/fimmu.2026.1969351
  21. Cancer Res. 2026 Oct 14.
      Hepatocellular carcinoma (HCC) driven by gain-of-function mutations in CTNNB1 (CTNNB1GOF) that stabilize β-catenin exhibits a profoundly immunosuppressive tumor microenvironment (TME), rendering it resistant to immune checkpoint blockade (ICB). Metabolic reprogramming is increasingly recognized as a crucial mediator of immune activity, highlighting the need to elucidate the specific metabolic mechanisms underlying immune exclusion in CTNNB1GOF HCC. Here, we identified a critical metabolic-immune network orchestrated by co-mutations of CTNNB1 and ARID2. Integrative analysis of HCC patient cohorts and a de novo MYC/CTNNB1GOF HCC mouse model revealed that tumors harboring concurrent CTNNB1 and ARID2 mutations exhibited a more immune-active TME and improved survival compared to tumors with CTNNB1 mutations alone. Mechanistically, β-catenin and ARID2 cooperatively enhanced the transcription of tryptophan 2,3-dioxygenase (TDO2), leading to accelerated kynurenine production and activation of the aryl hydrocarbon receptor (AhR) in myeloid-derived suppressor cells (MDSCs). This metabolic axis established an immunosuppressive milieu characterized by MDSC accumulation and impaired T cell function. Genetic ablation of Arid2 in CTNNB1GOF HCC attenuated TDO2-dependent kynurenine synthesis, reduced MDSC infiltration, and enhanced CD8⁺ T cell cytotoxicity, thereby sensitizing tumors to anti-PD-1 therapy. Clinically, co-mutations of CTNNB1 and ARID2 correlated with elevated immune infiltration and favorable ICB responses across multiple human cancers, including HCC. Importantly, pharmacological inhibition of AhR phenocopied the immunomodulatory effect of ARID2 loss and, when combined with anti-PD-1, robustly reversed the immune-cold phenotype of CTNNB1GOF HCC. These findings reveal TDO2-kynurenine-AhR signaling as a pivotal metabolic pathway enforcing immune evasion in CTNNB1-mutant HCC.
    DOI:  https://doi.org/10.1158/0008-5472.CAN-26-0860
  22. Hepatobiliary Surg Nutr. 2026 Oct 01. 15(5): 140
      
    Keywords:  Immunotherapy; T cell exhaustion; fibrolamellar carcinoma; neoantigen; vaccination
    DOI:  https://doi.org/10.21037/hbsn-2026-0291
  23. Nat Immunol. 2026 Oct 12.
      The regulatory mechanisms that maintain colonic immune homeostasis remain incompletely understood. Here we show that genetic deletion of Zbtb44, a previously uncharacterized member of the ZBTB transcription factor family, leads to spontaneous colitis and rectal prolapse. Zbtb44-/- T cells expressed increased IFN-γ, a pro-inflammatory cytokine strongly associated with human inflammatory bowel disease. Mechanistically, Zbtb44 undergoes SUMOylation, which facilitates its interaction with a conserved SUMO-interacting motif in T-bet, enabling binding to the IFN-γ promoter and enhancer to restrain chronic IFN-γ production. Together, these findings demonstrate that Zbtb44 is a key regulator of colonic inflammation, a role that could be exploited therapeutically.
    DOI:  https://doi.org/10.1038/s41590-026-02675-4
  24. Cancers (Basel). 2026 Oct 05. pii: 3213. [Epub ahead of print]18(19):
      Immunotherapy has revolutionized the treatment of multiple myeloma (MM), but durable immune control remains limited, increasing interest in how the bone marrow (BM) microenvironment influences antitumor immunity. BM adipocytes (BMAds) are increasingly recognized as metabolically active components of the BM. This review summarizes the current evidence linking BMAds to myeloma cell survival and immune cell function, particularly T cell activity. It also discusses their potential relevance to monoclonal antibodies, bispecific antibodies, and chimeric antigen receptor (CAR) T-cell therapy. Preclinical studies have shown that myeloma-associated BMAds undergo lipid depletion and acquire inflammatory and senescence-associated secretory features. BM lipid exposure is associated with impaired CD8+ T-cell metabolic fitness, whereas leptin receptor activation suppresses invariant natural killer T-cell anti-myeloma activity. Evidence concerning conventional natural killer cells and other immune compartments remains limited. Available clinical evidence is predominantly cross-sectional and therefore does not establish a direct role for BMAds in resistance to current immunotherapies or clarify whether they influence therapeutic target availability or function as clinically relevant bystander targets. Patient- and treatment-related factors, including aging and obesity, may further reshape the adipocytic-stromal and immune landscape of the marrow, potentially modifying local responses to immunotherapy. Future studies combining patient-derived multicellular models with spatial and longitudinal approaches should determine how BMAd-associated metabolic, inflammatory, and adipokine signaling affect immune control and treatment outcomes in MM and whether these processes can be therapeutically modulated.
    Keywords:  CAR T cell therapy; T-cell dysfunction; bispecific antibodies; bone marrow adipocytes; bone marrow microenvironment; immunometabolism; lipid metabolism; monoclonal antibodies; multiple myeloma; natural killer cells
    DOI:  https://doi.org/10.3390/cancers18193213
  25. Apoptosis. 2026 Oct 15. pii: 248. [Epub ahead of print]31(11):
      Immune checkpoint inhibitors (ICIs) have reshaped cancer treatment; however, durable clinical benefit remains limited by primary and acquired resistance, frequently associated with T cell dysfunction within an immunosuppressive tumor microenvironment. Beyond their classical role in hemostasis, platelets have emerged as active immune modulators capable of shaping antitumor T cell responses. Accumulating evidence indicates that platelets engage T cells through contact-dependent receptor-ligand interactions, immunomodulatory soluble factors, and the transfer of checkpoint-associated extracellular vesicles, thereby reinforcing dysfunctional T cell states and constraining responses to immune checkpoint blockade. In this review, we synthesize current mechanistic insights into platelet-T cell crosstalk, delineate its differential impact across T cell subsets, and integrate these processes into a broader framework of immune evasion and immunotherapy resistance. We further discuss emerging translational strategies aimed at modulating platelet immune functions, including antiplatelet drug repurposing, selective targeting of platelet-immune interfaces, and metabolic interventions to restore T cell fitness. Collectively, this work reframes platelets as non-canonical immune regulatory nodes and highlights platelet-T cell interactions as a therapeutically actionable layer of immune regulation with implications for improving and personalizing cancer immunotherapy.
    Keywords:  Antiplatelet strategies; Immune checkpoint inhibitor resistance; Platelets; Platelet–T cell crosstalk; T cell dysfunction; Tumor microenvironment
    DOI:  https://doi.org/10.1007/s10495-026-02459-z
  26. bioRxiv. 2026 Sep 29. pii: 2026.09.23.752815. [Epub ahead of print]
      Despite decades of HIV-1 vaccine development, the clonal and cellular determinants of durable vaccine-induced T cell memory remain incompletely understood. Here, we combined antigen- specific T cell receptor (TCR) identification, longitudinal TCR sequencing, and single-cell multi- omics to characterize Env- and Gag-specific memory precursor T cells elicited by the HIV Vaccine Trials Network (HVTN) 505 DNA prime-recombinant adenovirus serotype 5 (rAd5) boost (DNA/rAd5) vaccine regimen. We developed a generalizable high-throughput approach to identify HIV-1 Env- and Gag-specific TCRs and found distinct patterns of clonal expansion, persistence, and contribution to memory between Env- and Gag-specific CD8⁺ T cell responses. The DNA prime and rAd5 boost differentially shaped these repertoires, with rAd5-induced clones contributing proportionally more to the Gag-specific than to the Env-specific memory precursor compartment. Single-cell immune profiling further revealed distinct memory precursor states, with Env-specific responses enriched for GZMB + PRF1 + cytotoxic effector-memory (EM) CD8⁺ T cells and Gag-specific responses containing a larger cycling/proliferative population. Together, these findings demonstrate that heterologous DNA/rAd5 vaccination generates antigen-specific CD8⁺ T cell memory with distinct clonal trajectories and cellular programs, providing new insights into how vaccine platform and antigen-specificity shape the durability and functional properties of HIV-1 specific cellular immunity.
    DOI:  https://doi.org/10.64898/2026.09.23.752815
  27. Front Oncol. 2026 ;16 1975159
       Background: Lung adenocarcinoma (LUAD) is the most common histological subtype of lung cancer, with a dismal prognosis partly attributed to immune evasion mediated by T cell dysfunction within the tumor microenvironment. However, the molecular determinants governing CD8+ cytotoxic T lymphocyte functional competence remain incompletely understood. Chloride intracellular channel 3 (CLIC3) has been implicated in cancer progression, but its role in T cell immunity within the LUAD TME is unknown.
    Methods: We performed single-cell RNA sequencing on tumor tissues from nine LUAD patients spanning three pathological stages (adenocarcinoma in situ [AIS], minimally invasive adenocarcinoma [MIA], and invasive adenocarcinoma [IAC]), integrated with spatial transcriptomics, TCGA-LUAD bulk RNA-seq analysis, and flow cytometric validation in an independent cohort of 32 LUAD patients. Functional module scoring and pseudotime trajectory analysis were applied to characterize CLIC3-associated CTL functional states.
    Results: CLIC3 was predominantly expressed in CTLs and showed a stage-associated decline from AIS to MIA to IAC. CLIC3+ CTLs exhibited significantly higher module scores for cytotoxicity, cytoskeleton remodeling, interferon signaling, and chemotaxis compared to CLIC3- CTLs. Pseudotime trajectory analysis indicated that CLIC3+ cells were positioned at one end of the inferred transcriptional continuum, corresponding to a functionally active state, while CLIC3- cells were positioned at the other, corresponding to a dysfunctional state, accompanied by a decline in CD247, GZMB, PRF1, and TNF along the trajectory. High CLIC3 expression in TCGA-LUAD was associated with significantly longer overall survival. Flow cytometry showed a stage-associated decrease in CLIC3 expression on CD8+ T cells with increasing tumor invasiveness and poor differentiation.
    Conclusions: CLIC3 serves as a novel marker of CTL functional competence in LUAD, and its stage-associated downregulation reflects T cell dysfunction during tumor progression. CLIC3 expression in CD8+ T cells may represent a predictive biomarker for immunotherapeutic response and a potential target for restoring T cell function in LUAD.
    Keywords:  CLIC3; T cell exhaustion; cytotoxic T lymphocytes; lung adenocarcinoma; tumor microenvironment
    DOI:  https://doi.org/10.3389/fonc.2026.1975159
  28. bioRxiv. 2026 Oct 02. pii: 2026.09.30.753584. [Epub ahead of print]
      Clinical applications of gene editors including CRISPR-Cas9 are limited by the cell-type specificity and tissue penetrance of current in vivo delivery options. Cell-mediated gene editor delivery could overcome these obstacles. To date, systems utilizing immortalized cell lines have demonstrated gene editor delivery in vitro . Because T cells traffic throughout the organism and engage in intercellular communication with individual target cells, we wondered whether they could be engineered to deliver gene editing machinery. Here, we demonstrate that primary human T cells can produce retroviral-based enveloped delivery vehicles (EDVs) packaging functional Cas9 ribonucleoproteins. When paired with fusogenic VSV-G, T cell-generated Cas9-EDVs edited a diverse array of target cells. We developed a miniaturized Moloney murine leukemia virus-based system that proved superior to existing architectures in this context and optimized both lentiviral and site-specific knock-in approaches for T cell engineering. These Enveloped Particle Information Courier-(EPIC-) T cells offer key advantages as delivery systems.
    DOI:  https://doi.org/10.64898/2026.09.30.753584
  29. Res Sq. 2026 Sep 28. pii: rs.3.rs-11077727. [Epub ahead of print]
      Glioblastoma (GBM) adapts to metabolic stress through mitochondrial pathways that are not fully defined. Here, we show sulfide quinone oxidoreductase (SQOR) is upregulated in human GBM and functions as a mitochondrial checkpoint linking hydrogen sulfide (H 2 S) clearance to electron transport chain activity. In patient-derived GBM cells and immunocompetent syngeneic tumors, SQOR channels H 2 S-derived electrons into the ubiquinone pool to sustain oxidative phosphorylation during stress. Genetic or pharmacologic SQOR inhibition causes intracellular H 2 S accumulation, collapse of mitochondrial respiration, tricarboxylic acid cycle dysfunction, and compensatory glycolytic engagement. SQOR loss also redirects carbon into lipid synthesis and storage while impairing lipid mobilization, thereby limiting metabolic flexibility and stem-like cell maintenance. Increasing endogenous H 2 S production further exacerbates the bioenergetic defects caused by SQOR blockade. Functionally, genetic or pharmacologic SQOR inhibition suppresses tumor growth and prolongs survival in vivo . Together, these data identify SQOR-dependent sulfide oxidation as a mitochondrial liability that supports GBM metabolic plasticity.
    DOI:  https://doi.org/10.21203/rs.3.rs-11077727/v1
  30. Cancer Cell. 2026 Oct 12. pii: S1535-6108(26)00397-1. [Epub ahead of print]44(10): 1916-1917
      While tertiary lymphoid structures (TLSs) broadly correlate with immunotherapy efficacy, their functional heterogeneity can translate into divergent clinical outcomes. In this issue of Cancer Cell, Hu et al. uncover a microbiota-orchestrated stem-like lymphoid niche in which CD70+ ILC2s sustain progenitor exhausted T cells, and their findings redefine the functional organization underlying TLS-associated antitumor immunity.
    DOI:  https://doi.org/10.1016/j.ccell.2026.08.020
  31. Immunity. 2026 Oct 15. pii: S1074-7613(26)00397-3. [Epub ahead of print]
      Monocyte-to-macrophage differentiation is a central process that shapes immune responses across diverse contexts, yet how inflammatory cues engage metabolism to instruct monocyte fate commitment remains unclear. Here, using a CRISPR-based metabolic screen combined with monocyte-specific perturbations in bacterial lung infection, we identified lactate dehydrogenase A (LDHA) as a key metabolic regulator of monocyte commitment to the nitric oxide synthase 2 (NOS2)+ macrophage fate in vivo. LDHA-dependent cytosolic nicotinamide adenine dinucleotide (NAD+) regeneration enabled selective hypoxia-inducible factor 1-alpha (HIF1α) translation through its 5' untranslated region (UTR) and is associated with structural remodeling of this region. HIF1α then functioned as a downstream effector that promoted the NOS2+ macrophage fate. Granulocyte-macrophage colony-stimulating factor (GM-CSF) further acted as an upstream metabolic priming signal that enhanced LDHA-dependent HIF1α regulation and supported this differentiation process. Together, these findings suggest that metabolic redox state regulates monocyte fate commitment through selective mRNA translation coupled to RNA structural remodeling.
    Keywords:  GM-CSF; HIF1α; LDHA; RNA structural remodeling; cytosolic NAD(+) regeneration; monocyte fate commitment; redox metabolism; selective mRNA translation
    DOI:  https://doi.org/10.1016/j.immuni.2026.09.022
  32. Cell Rep. 2026 Oct 15. pii: S2211-1247(26)01226-X. [Epub ahead of print]45(10): 118147
      Gastric cancer (GC) is a highly aggressive malignancy with a strong propensity for lymph node metastasis. To characterize the metastatic ecosystem, we perform integrated single-cell transcriptomic and T cell receptor profiling of 156,871 cells from 30 primary tumors and matched sentinel lymph nodes (SLNs), spanning non-metastatic and metastatic tumors and SLNs from non-metastatic to micro- and macro-metastatic states. We identify LN-enriched progenitor exhausted T cells as a potential reservoir for tumor-infiltrating exhausted CD8+ T cells and reveal dynamic remodeling of the lymph node microenvironment by tumor-associated macrophages during disease progression. We further show that ILC3s promote a pro-metastatic microenvironment in micro-metastatic lymph nodes through the AREG-EGFR axis, facilitating lymphatic dissemination and subsequent establishment of CD24+ tumor cells. Collectively, these findings provide a stage-resolved view of the tumor-lymph node metastatic ecosystem and identify potential therapeutic targets in GC.
    Keywords:  CP: cancer; CP: immunology; gastric cancer; lymph node metastasis; single-cell sequencing; tumor immune microenvironment; type 3 innate lymphoid cell
    DOI:  https://doi.org/10.1016/j.celrep.2026.118147
  33. Eur J Immunol. 2026 Oct;56(10): e70297
      Regulatory T cells (Tregs) are essential for immune tolerance, with cAMP metabolism central to their suppressive function. Inducible cAMP early repressor (ICER) is a negative regulator of cAMP signalling. However, its role in Treg biology is not fully understood. Here we generated Foxp3-specific ICER knockout mice to assess ICER's function in Tregs. We found that ICER deficiency does not impair Treg development or suppression of effector T cell proliferation under homeostatic conditions. However, ICER-deficient Tregs display enhanced Foxp3 stability, increased glycolysis and proliferation but exhibit impaired suppression of IFN-γ production by effector T cells. In a dextran sodium sulphate-induced colitis model, loss of ICER in Tregs led to aggravated intestinal inflammation and tissue damage, without, however, a marked effect on gross disease parameters. These results identify ICER as a context-dependent modulator of Treg metabolism and inflammatory cytokine control, highlighting its potential role in regulating immune responses during inflammation.
    Keywords:  DSS colitis; ICER/CREM; cAMP metabolism; glycolysis; regulatory T cells
    DOI:  https://doi.org/10.1002/eji.70297
  34. Immun Inflamm Dis. 2026 Oct;14(10): e70557
       OBJECTIVE: Evaluate the effects of CD8+ T cell defects caused by Cd8a gene knockout on gut microbiota and hepatic metabolism, and preliminarily explore the underlying mechanisms.
    METHODS: The Cd8a gene was knocked out in mice to generate Cd8a knockout mice. Genotypes were identified using polymerase chain reaction (PCR) and agarose gel electrophoresis. Mice were divided into three groups: normal control, CD8+ T cell-deficient, and CD8+ T cell reinfusion, with six mice per group. CD8+ T cells from normal control mice were isolated via magnetic bead sorting and reinfused into CD8+ T cell-deficient mice via tail vein injection. Reinfusions were performed four times at 3-day intervals. Four weeks after the final reinfusion, fecal samples were collected, and DNA extracted for 16S rRNA gene sequencing analysis. Mouse livers were collected and analyzed using non-targeted metabolomics via liquid chromatography-tandem mass spectrometry (LC-MS/MS).
    RESULTS: We found that CD8+ T cell deficiency-induced alterations in gut microbiota primarily affected the phyla Firmicutes, Bacteroidetes, Proteobacteria, and Actinobacteriota. Following CD8+ T cell depletion, the abundance of bacteria such as Catabacter, Vicinamibacter, Mesorhizobium, Catellatospora, and Stomatobaculum increased (p < 0.05); after CD8+ T cell reinfusion, the abundance of these bacteria showed a decreasing trend (p < 0.05). We also identified five major metabolic pathways in mouse liver that showed significant correlations with CD8+ T cell status.
    CONCLUSION: CD8+ T cells exert a significant influence on hepatic metabolic responses and gut microbial community diversity.
    Keywords:  CD8+ T cells; gut microbes; liver metabolism
    DOI:  https://doi.org/10.1002/iid3.70557
  35. Cell Stem Cell. 2026 Oct 13. pii: S1934-5909(26)00348-6. [Epub ahead of print]
      Conventional chimeric antigen receptor (CAR)-T manufacturing requires prolonged ex vivo activation and expansion, which may compromise T cell fitness and promote inflammatory differentiation. Here, we developed PrimeCAR, a 2-day manufacturing strategy combining low-intensity anti-CD3 priming with IL-7 and IL-21. Compared with conventionally manufactured CAR-T cells, PrimeCAR products exhibited a distinct transcriptional state characterized by preserved stemness-associated programs and a PrimeCAR-enriched primed naive T cell (Tn)-like state. Following antigen stimulation, PrimeCAR cells preferentially engaged proliferative programs while limiting exhaustion-associated regulators and inflammatory mediators. Functionally, PrimeCAR cells demonstrated enhanced expansion, persistence, and durable antitumor activity in xenograft models. In investigator-initiated phase I studies of relapsed or refractory B cell acute lymphoblastic leukemia and B cell non-Hodgkin lymphoma, PrimeCAR showed encouraging clinical activity with a favorable safety profile. Together, these findings demonstrate that rapid manufacturing with controlled early T cell priming selectively restrains inflammatory programming while preserving CAR-T cell fitness, providing a practical strategy for improving CAR-T manufacturing and therapeutic performance.
    Keywords:  CAR-T cell fitness; CD19 CAR; T cell activation; acute lymphoblastic leukemia; chimeric antigen receptor T cell; inflammatory programming; low-intensity priming; non-Hodgkin’s lymphoma; primed Tn-like cell state; rapid manufacturing
    DOI:  https://doi.org/10.1016/j.stem.2026.09.006
  36. Cancer Immunol Res. 2026 Oct 15.
      Engineered T-cell therapies are limited by progressive dysfunction under chronic tumor antigen exposure, and genetic perturbation of negative regulators has emerged as a promising strategy to sustain effector activity. We reanalyzed a genome-wide CRISPR knockout screen in primary human T cells under repetitive tumor stimulation; protein-protein interaction mapping revealed seven members of the Cullin-RING Ligase 5 (CRL5) complex as an enriched hit cluster. Knockout of any of these members (CUL5, ARIH2, RNF7, UBE2F, UBE2L3, CISH, DCUN1D3) enhanced tumor serial killing, and CUL5, the complex scaffold, emerged as the strongest target. CUL5 knockout T cells exhibited sustained cytotoxicity, elevated effector cytokine production, and fewer exhaustion marker-positive cells while retaining antigen specificity and cytokine dependence. Quantitative ubiquitylation proteomics in resting, and acutely and chronically stimulated T cells mapped CRL5-dependent candidate substrates beyond the canonical JAK/STAT axis, including nutrient transporters, receptor trafficking proteins, and TCR signaling components. The benefit of CUL5 knockout extended across CARs targeting CD19, BCMA, and HER2 with different costimulatory domains, and to 1XX-modified CAR and HLA-independent TCR architectures. Combining CUL5 ablation with a tumor-induced IL-2 circuit produced tumor control across nine rounds of repetitive stimulation, whereas either modification alone eventually failed. In vivo, CUL5 knockout BCMA CAR T cells were enriched in the bone marrow following repeated tumor rechallenge and exhibited enhanced ex vivo cytotoxicity after nearly 90 days in tumor-bearing mice. These findings position CUL5 perturbation as a strategy to improve T-cell persistence and the efficacy of adoptive cell therapies, potentially with engineered cytokine support.
    DOI:  https://doi.org/10.1158/2326-6066.CIR-26-0608
  37. Cell Mol Immunol. 2026 Oct 13.
      Engineering autologous T cells for adoptive therapies has revolutionized cancer treatment, yet limited persistence remains a major barrier to robust clinical responses and durable disease control. Although costimulation with 4-1BB markedly improves CAR-T-cell persistence, no comparably effective approach has been identified to enhance persistence in T-cell therapies that rely on native TCR signaling, including conventional TCR-T cells and synthetic T-cell receptor and antigen receptor (STAR) T cells. To identify intrinsic persistence regulators in a TCR-based context, we performed an in vivo CRISPR activation screen in STAR-T cells and identified the noncanonical NF-κB axis, with RELB as the top hit. Direct RELB overexpression, however, exhibited dose-dependent cytotoxicity, motivating a translational alternative: overexpression of p52, the ncNF-κB transcription partner of RELB. Under prolonged antigen exposure, p52 overexpression sustained proliferation, preserved effector functions, and increased the intratumoral trafficking potential, particularly in CD8⁺ T cells, thereby yielding superior tumor control. Mechanistically, transcriptomic profiling revealed coordinated upregulation of cell cycle programs and chemokine receptors, along with downregulation of apoptosis and exhaustion-associated modules. Moreover, p52 overexpression restored RELB nuclear translocation in the context of PD-1/PD-L1 engagement, indicating partial resistance to checkpoint-mediated suppression and sustained ncNF-κB activity in PD-L1hi immunosuppressive environments. Collectively, our findings identify p52 as an antigen-dependent enhancer of ncNF-κB, conferring durable persistence and checkpoint resilience on TCR-based T cells and providing a feasible strategy to improve therapeutic effects in solid tumors.
    Keywords:  CRISPR activation screening; Non-canonical NF-κB signaling; STAR; T cell persistence; p52
    DOI:  https://doi.org/10.1038/s41423-026-01471-2
  38. Crit Rev Oncog. 2026 ;31(1): 35-49
      Chimeric antigen receptor T (CAR-T) cell therapies, based on introducing a genetically modified T cell receptor to a patient's T cells, have transformed the treatment of hematological tumors. However, their efficacy in solid tumors is limited to date. Among the multiple barriers that shape CAR-T cell efficacy, including antigen heterogeneity, hypoxic tumor microenvironment (TME), and immunosuppressive cell populations, the altered extracellular matrix (ECM) has emerged as a dominant but understudied obstacle. In this review, we summarize the key ECM alterations characteristic of solid tumors and highlight the physical and molecular features that limit CAR-T cell function and promote exhaustion. We further discuss strategies to overcome these constraints and therapy resistance, as well as approaches to assess CAR-T therapy efficacy in clinically relevant models.
    DOI:  https://doi.org/10.1615/CritRevOncog.2026063896
  39. bioRxiv. 2026 Sep 28. pii: 2026.09.25.754528. [Epub ahead of print]
      Tumor-associated macrophages (TAMs) contribute to tumor immune evasion and therapeutic resistance. However, the epigenetic and transcriptional regulators that control TAM function remain largely unidentified. Here we investigated the role of the SWI/SNF chromatin remodeling complex in TAMs and whether disruption of SWI/SNF function in TAMs could improve immunotherapy. Pharmacologic inhibition of SWI/SNF ATPase activity improved the efficacy of checkpoint blockade immunotherapy, slowing tumor growth and reprogramming transcription broadly in tumor cells, tumor-infiltrating lymphocytes, and TAMs. To define the role of SWI/SNF in TAMs specifically, we genetically deleted the SWI/SNF subunit Arid1a in myeloid cells and found this was sufficient to suppress tumor progression and enhance checkpoint blockade response. Epigenomic and single cell analyses indicated that SWI/SNF inhibition and ARID1A deletion in TAMs reduced accessibility at enhancers of genes associated with poor prognosis, such as Spp1, and increased accessibility at promoters of interferon-stimulated genes (ISGs). CD86 was elevated on ARID1A-deficient TAMs and the enhanced immunotherapy response required CD86 costimulation and CD8+ T cells. These findings establish ARID1A-dependent chromatin remodeling as a determinant of TAM gene expression programs and show that disruption of myeloid SWI/SNF function improves checkpoint blockade immunotherapy via TAM reprogramming.
    DOI:  https://doi.org/10.64898/2026.09.25.754528
  40. BMC Cancer. 2026 Oct 15. pii: 1235. [Epub ahead of print]26(1):
      Preserving T cell cytotoxic function during ex vivo expansion remains a major challenge for adoptive cancer immunotherapy. A synthetic immune niche (SIN) composed of immobilized CCL21 and ICAM1 was shown to improve T cell expansion while preserving cytotoxicity; however, it remains unclear which specific step of the T cell killing process is enhanced by the SIN stimulation. Here, we combined advanced imaging based on time-lapse microscopy with a mean-field model to analyze the distinct stages in killing of B16 melanoma cells by CD8[Formula: see text] T cells. This framework enabled us to resolve the tumor cell killing process into discrete steps throughout target cell engagement with SIN-treated T cells and lytic hit delivery. We found that tumor cell death is best explained by a multi-hit process, requiring approximately four discrete hits to trigger cell death. Model-based analysis identified a significant increase in the lytic hit-delivery rate, [Formula: see text], as the main kinetic change associated with the enhanced cytotoxicity of SIN-treated T cells. The target encounter rate, [Formula: see text], could not be reliably compared between conditions because it was practically non-identifiable in the untreated dataset. Global sensitivity analysis further showed that increasing lytic hit delivery has a stronger effect on tumour control than increasing target encounter rates. These findings fundamentally reorient our understanding of optimized T cell manufacturing, suggesting that the lytic execution step may be the primary rate-limiting bottleneck in this in-vitro system, and that engineering strategies targeting granule polarization or discharge warrant prioritization alongside affinity-enhancement approaches.
    Keywords:  CD8[Formula: see text] T cell; Cytotoxicity; Multi-hit theory; Parameter estimation; Practical identifiability; Sensitivity analysis
    DOI:  https://doi.org/10.1186/s12885-026-16748-y
  41. J Physiol. 2026 Oct 16.
      Nearly 100 years ago, Otto Warburg observed that cancer cells preferentially use glycolysis even in the presence of oxygen, supporting rapid cell growth. Since then, the concept of the Warburg effect has expanded far beyond tumour bioenergetics and is now recognised as a key feature of immune cell activation. A notable example is in macrophages, which, following pro-inflammatory stimulation, undergo Warburg-like metabolic reprogramming, characterised by increased glycolysis. Recent studies have shown that accumulated metabolites such as lactate have a range of immunoregulatory functions that shape macrophage inflammatory responses. In addition, glycolytic enzymes have been found to exert non-canonical functions that directly regulate macrophage immune signalling. Mitochondria, once considered suppressed during Warburg reprogramming, also undergo profound changes, with the electron transport chain generating reactive oxygen species and metabolites such as succinate, fumarate and itaconate playing complex immunoregulatory roles, and mitochondrial dynamics actively shaping metabolism and immune responses. Together, these findings redefine the Warburg effect in macrophages as a coordinated metabolic and signalling process that integrates glycolysis, mitochondrial function and immunometabolite signalling to optimise context-dependent immune responses.
    Keywords:  ETC; TCA cycle; Warburg metabolism; glycolysis; itaconate; lactate; macrophage; mitochondria
    DOI:  https://doi.org/10.1113/JP291073
  42. bioRxiv. 2026 Sep 28. pii: 2026.09.26.754703. [Epub ahead of print]
      Many cancers evade immunity by converting neutrophils into polymorphonuclear myeloid - derived suppressor cells (PMN-MDSCs), but the chromatin mechanisms that maintain this pathological state remain unclear. Here we show that tumor-induced suppressive neutrophils depend on mSWI/SNF chromatin remodeling. Two orally bioavailable mSWI/SNF ATPase antagonists, a degrader and a catalytic inhibitor, produced immune-dependent tumor control across syngeneic models, including tumors resistant to PD-1 blockade, and enhanced checkpoint therapy without overt toxicity. Treatment rapidly depleted intratumoral PMN-MDSCs, restored functional CD8 + T cells, and blocked tumor explant-induced expansion and suppressive activity of mouse and human PMN-MDSCs. mSWI/SNF antagonism collapsed chromatin accessibility and PU.1/C/EBPβ occupancy at regulatory elements that sustain PMN-MDSC identity. Thus, suppressive neutrophils harbor a druggable chromatin vulnerability that can be exploited to restore cancer immunity.
    DOI:  https://doi.org/10.64898/2026.09.26.754703
  43. Aging Cell. 2026 Oct;25(10): e70769
      Chronic metabolic stress is increasingly recognized as a driver of aging-like tissue dysfunction, but whether it durably reprograms liver regenerative cells, potentially compromising tissue maintenance and repair, remains unknown. Here, we show that high-fat diet (HFD)-induced metabolic stress promotes a persistent senescence-like state in the liver regenerative compartment. In male rats, chronic HFD feeding induced hepatic steatosis together with oxidative stress, inflammatory responses, and senescence-associated changes. Following carbon tetrachloride-induced liver injury, HFD-fed animals exhibited reduced proliferative responses. To determine whether these abnormalities were durably retained within regenerative cell populations, we established liver organoids from control and HFD-fed rats. HF-derived organoids showed reduced formation efficiency and impaired serial propagation capacity outside the original metabolic environment. Senescence-associated abnormalities, including increased senescence-associated β-galactosidase staining, reduced Lamin B1 staining, and decreased Ki67 positivity, remained detectable through Passage 3. Transcriptomic and functional analyses revealed mitochondrial dysfunction and enhanced oxidative and inflammatory responses. These organoids also exhibited enhanced lipid accumulation and inflammatory secretion following fatty acid challenge. Treatment with the mitochondria-targeted antioxidant MitoQ reduced oxidative stress and inflammatory secretion, improved oxygen consumption, and partially restored organoid formation efficiency, supporting a functional contribution of mitochondrial dysfunction to regenerative impairment. Together, these findings support a model in which chronic metabolic stress leaves persistent senescence-like dysfunction within the liver regenerative compartment, extending its consequences beyond abnormalities in mature liver tissue.
    Keywords:  cellular senescence; liver progenitor; liver regeneration; metabolic dysfunction‐associated steatotic liver disease (MASLD); metabolic stress; mitochondrial dysfunction; organoid; stem cell aging
    DOI:  https://doi.org/10.1111/acel.70769
  44. Crit Rev Oncog. 2026 ;31(1): 67-107
      Neurotransmitters are critical signaling molecules of the nervous system that activate their receptors within milliseconds, and convey accurate, coordinated, tightly regulated and important messages from one nerve cell, across a synapse, to another nerve, muscle or gland cell. It is time to realize that specific neurotransmitters also activate T cells directly and rapidly via their receptors in T cells. Subsequently, they decrease immune checkpoint inhibitors, increase expression of critical receptors, and induce a kaleidoscope of effector T cell functions. This review summarizes our discoveries of direct, activating, rejuvenating, and strengthening effects of either Dopamine, Glutamate, GnRH-II or Neuropeptide Y, or their combinations on human T cells of five origins: (1) normal T cells of healthy people, (2) exhausted T cells of head and neck cancer patients, (3) exhausted T cells of hepatocellular carcinoma patients, (4) exhausted T cells of glioblastoma patients, and (5) human genetically-engineered CAR T cells. The beneficial effects of these neurotransmitters on healthy T cells and on exhausted T cells of cancer patients include the following: depolarization; simultaneous decreased expression of key checkpoint inhibitors (PD-1, LAG-3, Tim-3, TIGIT and CD160); increased expression of CD3 zeta chain, CD147/EMM-PRIN/Basigin and 67kDa laminin receptor; and increased adhesion to fibronectin and laminin, chemotactic migration to SDF-1, migration toward autologous tumors, gene expression, cytokine secretion, proliferation, and arrest of human cancer cells. The direct effects of GnRH-II, Dopamine, or Glutamate on human anti-breast cancer ErbB-2+ CAR T cells were discovered in a yet unpublished collaborative research with Professor Zelig Eshhar, the pioneering scientist who invented and developed the concept of T-bodies, later re-named CAR T cells. The direct effects of the neurotransmitters on these CAR T cells include (1) dramatically increased expression of: CD3 zeta, CD147 and CXCR4, within only 30 minutes; (2) increased chemotactic migration towards SDF-1; (3) increased migration toward breast cancer cells; (4) increased penetration of the bone marrow of SCID mice; (5) increased homing to human breast cancer in SCID mice; and (6) increased inhibition of human breast cancer in SCID mice. In summary, either Glutamate, Dopamine, Neuropeptide Y, GnRH-II or their combinations, can activate, rescue, and strengthen healthy, exhausted, and genetically engineered CAR T cells. A novel personalized adoptive immunotherapy, called Brain-iT Immunotherapy, was invented and patented, and the review details its diagnostic and therapeutic stages for either patient's exhausted T cells or genetically engineered CAR T cells.
    DOI:  https://doi.org/10.1615/CritRevOncog.2026064153
  45. Dev Cell. 2026 Oct 14. pii: S1534-5807(26)00358-8. [Epub ahead of print]61(10): 1945-1946
      Senescent cells develop a persistent inflammatory signature with broad consequences for tissue function and disease. Martini et al.1 show that mitochondrial citrate metabolism drives inflammation through a pathway that acts independently of mitochondrial DNA-driven immune signaling yet cooperates with it to amplify the inflammatory response.
    DOI:  https://doi.org/10.1016/j.devcel.2026.09.010
  46. Trends Neurosci. 2026 Oct 14. pii: S0166-2236(26)00190-6. [Epub ahead of print]
      The midbrain dopamine system is integral to movement, reward, and motivation, and its dysfunction underlies a range of brain disorders. Age is a primary risk factor for many of these disorders, yet systematic analysis of how the dopamine system changes during healthy aging remains relatively understudied. In this review, we first examine the impact of healthy aging on the dopamine system across sexes and species, including flies, mice, rats, and humans. We next consider the neuroadaptive mechanisms that sustain dopamine neuron function with age. Finally, we contrast the molecular mechanisms of age-related neurodegenerative diseases with those of healthy aging, exploring the possibility that loss of neuroadaptive reserve drives dopamine neurodegeneration. Elucidating these neuroadaptive mechanisms could offer a path toward preserving dopamine neuron function across the lifespan and potentially preventing age-related neurodegeneration.
    Keywords:  Parkinson’s disease; lifespan; metabolism; neurodegeneration; oxidative stress; ribosome
    DOI:  https://doi.org/10.1016/j.tins.2026.09.008
  47. Am J Chin Med. 2026 Oct 08. 1-29
      We previously demonstrated that anemoside B4 (AB4) exerts a beneficial effect in a dextran sulfate sodium (DSS)-induced murine model of ulcerative colitis (UC). In this study, we further explored the mechanism of AB4 against UC from the perspective of gut microbiota-immune interplay. The gut microbiota was depleted in two DSS-induced colitis models to investigate the modulatory effects of the gut microbiome on immune responses and the activity of AB4. In parallel, adoptive transfer of CD4[Formula: see text]CD62L[Formula: see text] T cells into Rag1-deficient (Rag1-/-) mice was used to elucidate the alterations in the gut microbiota associated with immune-mediated colitis as well as the modulation by AB4. qPCR, ELISA and western blotting were used to determine the inflammatory responses of mice with colitis, while immunohistochemistry and flow cytometry were employed to determine the CD4[Formula: see text] T cell function and the underlying mechanism. Metagenomic sequencing analysis was used to detect changes in the intestinal microbiota. The depletion of the gut microbiota attenuated disease severity and immune responses in mice with DSS-induced acute and chronic colitis. Notably, the inhibitory effects of orally administered AB4 on colitis progression and immune responses were abrogated. In addition, colitis induced by adoptive transfer of CD4[Formula: see text]CD62L[Formula: see text] T cells into Rag1-/- mice was accompanied by CD4[Formula: see text] T cell engraftment and alterations in gut microbiota. Remarkably, all these pathological changes were significantly attenuated by AB4. Crucially, we found that AB4 suppresses the proliferation, migration, and differentiation of CD4[Formula: see text] T cells, which provides a mechanistic basis for its immunosuppressive effects. Collectively, these findings indicate that the gut microbiota and the immune system, particularly CD4[Formula: see text] T cells, interact with each other in the initiation of colitis. We show that, by targeting this gut microbiota-immune interplay, AB4 is a promising therapeutic strategy for UC.
    Keywords:  Adoptive Transfer; Anemoside B4; CD4[Formula: see text] T Cells; Dextran Sulfate Sodium (DSS); Gut Microbiota-Immune Interplay; Rag1−/− Mice; Ulcerative Colitis
    DOI:  https://doi.org/10.1142/S0192415X26500849
  48. Aging Cell. 2026 Oct;25(10): e70773
      Skeletal muscle is increasingly recognized as a secretory organ that communicates with distant tissues through the release of bioactive factors, including extracellular vesicles (EVs). During aging, muscle-derived EVs have emerged as important mediators of interorgan communication, influencing tissue homeostasis, regeneration, metabolism, and disease progression. Recent studies demonstrate that skeletal muscle EVs carry diverse cargos such as proteins, lipids, metabolites, and regulatory RNAs that can modulate the function of recipient cells in multiple organs. In particular, aging-associated alterations in EV biogenesis, cargo composition, and secretion may contribute to chronic inflammation, stem cell dysfunction, metabolic decline, and age-related pathologies. In this review, we summarize current advances in skeletal muscle-derived EV biology and their roles in interorgan communication during aging. We discuss mechanisms regulating EV formation and cargo loading, their impact on stem cell function and tissue regeneration, and their involvement in aging-related diseases. We also highlight the translational potential of muscle EVs as biomarkers and therapeutic targets. Together, these findings identify muscle-derived EVs as key regulators of systemic aging and interorgan signaling.
    DOI:  https://doi.org/10.1111/acel.70773