bims-ecemfi Biomed News
on ECM and fibroblasts
Issue of 2026–02–22
fifteen papers selected by
Badri Narayanan Narasimhan, University of California, San Diego



  1. Cell Rep Methods. 2026 Feb 13. pii: S2667-2375(26)00007-X. [Epub ahead of print] 101307
      Immune cell-mediated killing of cancer cells in a solid tumor is prefaced by a multi-step infiltration cascade of invasion, directed migration, and cytotoxic activities. Standard in vitro cytotoxicity assays measure immune cell killing in obstacle-free, two-dimensional (2D) microenvironments, which preclude the study of 3D immune cell-extracellular matrix (ECM) interactions. Here, we use a 3D multi-compartment assembloid for the combined study of immune cell stromal invasion and matrix migration, followed by invasion of the solid tumor and subsequent cytotoxicity. We compare this 3D cytotoxicity assay to the benchmark 2D cytotoxicity assay using both unmodified immune cells and chimeric antigen receptor (CAR) T cells. This assay is amenable to a range of imaging techniques, allowing for the direct observation and quantification of each stage of infiltration in various immune and oncological contexts. We highlight the value of the 3D infiltration/cytotoxicity assay as an important tool for the mechanistic study of immune cell interactions with the tumor microenvironment.
    Keywords:  3D; CP: immunology; CP: stem cell; assembloid; cell engineering; cell killing assay; immunology; in vitro; infiltration; solid tumor; tumor microenvironment
    DOI:  https://doi.org/10.1016/j.crmeth.2026.101307
  2. Adv Healthc Mater. 2026 Feb 21. e04885
      Biodegradable polyesters are promising biomaterials for tissue engineering. Polycaprolactone (PCL) is particularly attractive for orthopedic applications like craniofacial bone repair but does not degrade at the same rate as new tissue formation, which may compromise functional regeneration. To address this, we incorporated a protease-cleavable peptide directly into the PCL backbone. A functional mass spectrometry approach was used to identify a fast-degrading peptide (Fast) selectively cleaved by multiple cell types. Conjugates containing Fast or its scrambled control (ScrFast) were solvent-cast with an RGDS-PCL conjugate into disks. Including Fast and ScrFast peptides did not impair cell adhesion. Cy3-labeling enabled real-time quantification of degradation in the presence of collagenase or human mesenchymal stromal cells (hMSCs). After 21 days in collagenase, Fast-PCL released 20.38 ± 2.17 nmol Cy3 (25.77% ± 3.70%) vs. 8.70 ± 0.92 nmol (11.31% ± 1.01%) for ScrFast-PCL with respective mass losses of 22.1% ± 1.2%, and 18.9 ± 3.8%, indicating enzyme-mediated degradation. Under hMSC-mediated degradation, Fast-PCL released 30.31 ± 3.18 nmol Cy3 (26.68% ± 2.17%) compared to 23.91 ± 2.13 nmol (18.97% ± 1.24%) from ScrFast-PCL, indicating sequence-dependent, cell-directed resorption. This platform integrating protease-sensitive peptides into the polymer backbone can be leveraged to couple scaffold remodeling to enhance tissue regeneration.
    Keywords:  biodegradable polymers; biomaterials; cell‐mediated degradation; peptides; proteases; tissue engineering
    DOI:  https://doi.org/10.1002/adhm.202504885
  3. Soft Matter. 2026 Feb 18.
      Viscoelastic properties of tissues, including elasticity and viscosity, are crucial for understanding development and disease progression. However, traditional atomic force microscopy (AFM) indentation methods provide limited insight into these complex tissue properties. This study establishes microrheology via oscillatory AFM to assess both the elastic and viscous components of tissue mechanics. We first compared indentation AFM to oscillatory AFM on mouse retinal tissue and found that the Young's modulus of indentation AFM (956.8 Pa) was statistically similar to the elastic component (storage modulus, E') of oscillatory AFM (920.2 Pa), while also providing the viscous component (loss modulus, E″ = 218.3 Pa), and the loss factor (tan(δ) = 0.238) across a wide range of biologically relevant frequencies (1-100 Hz). We also found that optimization of input probe parameters, such as approach length, approach speed, applied force, and oscillation amplitude, is key for accurate measurements. To examine whether this approach can detect differences between healthy and diseased tissues, we applied it to murine retinas from healthy control mice and diabetic retinopathy mice, using the oxygen-induced retinopathy (OIR) mouse model. OIR retinas exhibited increased stiffness (E' = 3564.0 Pa) and a higher loss factor (tan(δ) = 0.478) compared to healthy retinas (E' = 920.7, tan(δ) = 0.263), suggesting changes in the extracellular matrix and highlighting how retinopathy may alter matrix properties. Finally, to assess the feasibility of using microrheology AFM on banked tissues biospecimens, we examined how tissue fixation affects the measurements. We found that formaldehyde fixation increased stiffness and elasticity, with OIR tissues consistently stiffer than WT tissues in both fixed and unfixed tissues, enabling valid cross-treatment comparisons. Our findings establish the benefits of microrheology in capturing tissue mechanical behavior, which is important for studying disease impact on tissue mechanics. This approach offers new insights into tissue viscoelasticity with implications for studying the dynamics of tissue mechanics in diseases and regeneration.
    DOI:  https://doi.org/10.1039/d5sm01060h
  4. Phys Rev E. 2026 Jan;113(1-1): 014407
      Cell migration is a dynamic process that is of critical importance to various aspects of living organisms, including organogenesis, wound healing, and immune responses. Several external factors are known to influence and direct active cell movement, such as chemokine gradients and the composition and mechanical properties of the extracellular matrix (ECM). While progress has been made in elucidating some of the biochemical pathways that control cell migration, little is known about the impact of the porous structure of the ECM on active cell motion. Here, by combining computational modeling and theory, we reveal how porous environments, as represented by the ECM, determine cell migration dynamics. Simulating cell movement in a 3D cellular Potts model accounting for amoeboid-like cell shape dynamics, we show that cell migration within disordered porous environments is characterized by distinct transient motility regimes that deviate from persistent motion and are best described by the 'hopping' of cells between 'traps.' Using theory, we can show how these motility regimes and large-scale transport properties are linked to geometrical properties of the microstructure. Importantly, our analyses reveal that spatial heterogeneities in the porosity lead to nonhomogeneous cell distributions and effectively guide cell movement toward regions of low porosity, an effect which we term as porotaxis. Overall, our work reveals the porosity of the ECM as an important control parameter that shapes cell migration and cellular distribution, and provides a conceptual framework to relate experimentally observed cell motility modes to tissue structures and vice versa. This connection between geometry and cell motility could enhance our understanding of how structural elements shape cell migration and tissue organization in various conditions, such as chronic inflammation, immunity, and cancer.
    DOI:  https://doi.org/10.1103/hvtd-qwp1
  5. Matrix Biol Plus. 2026 Mar;29 100191
      The extracellular matrix (ECM) critically regulates fibroblast behavior during tissue repair and regeneration. However, how culture dimensionality influences fibroblast-mediated ECM remodeling remains unclear. This study investigated the effects of three-dimensional (3D) fibrin hydrogels on the phenotype and remodeling activity of primary human gingival fibroblasts (GFs) compared to conventional two-dimensional (2D) monolayer cultures. Live/dead staining confirmed high GF viability in both conditions, with elongated and branched cell morphologies in 3D fibrin hydrogels, contrasting with spindle-shaped cells in 2D monolayers. Hematoxylin and Eosin, and Masson's Trichrome staining revealed progressive fibrin degradation and de novo collagen deposition over 21 days of culturing. Gene expression analysis showed that while FN1, COL1A1, and COL3A1 levels remained relatively stable, TGFB1 expression increased significantly from day 7 to day 14 in 3D hydrogels (p < 0.05) and was higher than in 2D cultures at day 21 (p < 0.05). This coincided with a marked upregulation of ACTA2 (p < 0.01), indicating myofibroblast-like differentiation. MMP-2 activity increased significantly over time in both 2D and 3D cultures (p < 0.01 and p < 0.001, respectively). In contrast, PLAU and PLAT expression decreased significantly at days 14 and 21 (p < 0.001 and p < 0.05, respectively), reflecting a temporal shift from fibrinolytic to collagenolytic remodeling. Despite active remodeling, mechanical testing showed no significant changes in hydrogel stiffness or relaxation between day 1 and day 7, or between cell-seeded and acellular gels (p > 0.05), likely due to the small contractile forces generated by the cells relative to the gel's bulk modulus. Together, these findings demonstrate that 3D fibrin hydrogels provide a biologically active and physiologically relevant microenvironment that supports fibroblast-mediated ECM remodeling, offering a biomimetic model for investigating the mechanobiology of periodontal and peri-implant soft tissue regeneration.
    Keywords:  3D cell culture; Extracellular matrix; Fibrin; Gingival fibroblasts; Wound healing
    DOI:  https://doi.org/10.1016/j.mbplus.2026.100191
  6. NPJ Precis Oncol. 2026 Feb 14.
      Compressive stresses are linked to the malignancy state of tumors. These stresses can drive cancer cells toward a malignant phenotype. The objective of this study is to investigate how patient-specific heterogeneity of a tumor tissue influences the stresses experienced by tissue components that are believed to play important roles in malignancy state. A unique image-based, physics-driven in silico modeling is developed, replicating a breast tumor tissue with the complexity and heterogeneity as observed in humans. This model employes images acquired by Fourier transform infrared (FTIR) microscopy which images and classifies breast tissues into six components including non-cancerous, malignant, others, dense, loose, and reactive stroma. We show that heterogeneous tissues having small and disconnected pieces of malignant components experience higher stresses, highlighting the dependency of stress magnitude on components' configuration, neighborhood, and initial surface area. Our in silico model predicts stresses on pre-cancerous lesions in the range that drive them to become lethal.
    DOI:  https://doi.org/10.1038/s41698-026-01316-1
  7. Carbohydr Polym. 2026 May 01. pii: S0144-8617(26)00029-9. [Epub ahead of print]379 124913
      The use of hydrogel microparticles as granular hydrogels is an emerging approach in tissue engineering, where microparticles offer printability, injectability, and serve as scaffolds for cell culture. While culturing dermal fibroblasts for tissue engineering applications is well reported, there is limited research on culturing primary human pulmonary fibroblasts on granular hydrogels. In this study, we grafted RGD-peptides to alginate, formed microbeads, and investigated the ability of granular hydrogels to support the adhesion and growth of primary normal human dermal fibroblasts (NHDFs) and human pulmonary fibroblasts (HPFa). NHDFs adhered to linear RGD (linRGD)-alginate microbeads and spread on the bead surfaces with increased adhesion with increased peptide concentration (0.3-1.3 mM). In contrast, HPFa did not adhere to the linRGD-alginate microbeads. However, HPFa adhered and spread on flat linRGD-alginate gels, indicating that HPFa do respond to linRGD as an adhesion ligand. Supplementation of Mn2+ resulted in cell adhesion to linRGD-alginate microbeads. Enhanced adhesion and spreading of HPFa to RGD-alginate microbeads were observed when using cyclic RGD. Hence, RGD-alginate microbeads is a promising material for structuring primary human dermal and pulmonary fibroblasts, showing the relevance of using alginate microbeads as scaffolds for 3D cultures with fibroblasts.
    Keywords:  Alginate; Cell adhesion; Fibroblasts; Microbeads; RGD peptide
    DOI:  https://doi.org/10.1016/j.carbpol.2026.124913
  8. Small. 2026 Feb 20. e09246
      The extracellular matrix (ECM) plays a crucial role in regulating tissue behavior through a dynamic interplay of spatial and temporal cues. Dynamic materials capable of modulating these cues at relevant scales are essential for tackling current challenges in tissue engineering and addressing fundamental biological questions. In vision research, there is a notable lack of suitable in vitro systems to study ECM dynamics. To help fill this gap, we developed an easy-to-use, photosensitive poly(ethylene glycol)-based hydrogel that can deform on demand to simulate ECM bulging, known as drusen, associated with the aging of the outer retina. Our findings demonstrate that variations in the size of these artificial drusen during culture impact morphometric parameters of the retinal pigment epithelium, offering new insights into its mechanical resilience to different drusen sizes. Notably, drusen formation in our system does not significantly affect the cellular actin cytoskeleton or polarity, which are often disrupted in conventional acute substrate deformation models, allowing the study of early aging before detectable pathology. In summary, we present a light-tunable hydrogel platform that enables precise spatial mimicry of ECM topographical changes, offering a promising tool for investigating the mechanobiological aspects of dynamic cell-matrix interactions.
    Keywords:  ECM; RPE; aging; epithelium; photodegradable hydrogel; topography
    DOI:  https://doi.org/10.1002/smll.202509246
  9. ACS Appl Polym Mater. 2026 Feb 13. 8(3): 1795-1803
      Dynamic polymer networks bridge the gap between traditional thermoplastics and thermosets, representing an avenue toward sustainable polymer synthesis. In this study, we utilize photoinitiated thiol-ene click chemistry to synthesize dynamic polymer networks through incorporating a series of bifunctional silyl ether alkene cross-linkers in the presence of catalytic p-toluene sulfonic acid. We demonstrate that the viscoelastic properties of the material, represented by its stress relaxation time constant, can be manipulated by up to 3 orders of magnitude by simple modifications in catalyst loading, amount of silyl ether cross-linker present, and/or dynamic cross-linker length. Our results show that a nonmonotonic relationship exists between stress relaxation kinetics and cross-linker length. Two representative networks were chosen to illustrate reprocessability under mild temperature conditions. These networks exhibited no loss of mechanical integrity after three reprocessing cycles. The networks can also be fully degraded in the presence of an excess of an acid catalyst.
    Keywords:  Click Chemistry; Covalent Adaptable Network; Dynamic Polymer; Reprocessable; Silyl Ether Exchange; Stress Relaxation
    DOI:  https://doi.org/10.1021/acsapm.5c03887
  10. Adv Sci (Weinh). 2026 Feb 20. e08967
      A great deal is known about the formation and architecture of biological neural networks in animal models, which have arrived at their current structure-function relationship through evolution by natural selection. Little is known about the development of such structure-function relationships in a scenario where neurons are allowed to grow within evolutionarily-novel, motile bodies. Previous work showed that ectodermal tissue excised from Xenopus embryos, develops into a three-dimensional mucociliary epidermal organoid ex vivo and exhibits movements distinct from age-matched tadpoles. These 'biobots' are autonomous, self-powered, and able to move through aqueous environments. Here, we report a new type of biobot, the neurobot, composed of mucociliary epidermis and neural tissue. We show that neural precursor cells implanted in explanted Xenopus ectodermal tissue develop into mature neurons, extending processes both toward the surface and among each other. These self-organized neurobots exhibit unique morphology, more complex movements, and different responses to neuroactive drugs compared to non-neuronal counterparts. Calcium imaging confirms neuronal activity in neurobots. Transcriptomics reveals increased transcript variability, expression of genes related to nervous system development, a shift toward ancient genes, and up-regulation of neuronal genes linked to visual perception.
    Keywords:  biorobotics; neuroengineering; plasticity; self‐organizing neural nets
    DOI:  https://doi.org/10.1002/advs.202508967
  11. iScience. 2026 Feb 20. 29(2): 114788
      Tumor metastasis represents a lethal event for patients due to the lack of effective treatments. Compared with primary tumors, the components of the tumor microenvironment (TME) of metastatic tumors are different. Tumor cells alone are unable to metastasize. Cancer-associated fibroblasts (CAFs), as one major component of TME, drive tumor metastasis. In metastatic lesions, the proportion of CAFs is significantly higher and is spatially close to tumor cells with high metastatic potential. CAFs themselves are resistant to chemoradiotherapy and have strong invasive ability based on their major role in degrading the extracellular matrix (ECM). Furthermore, CAFs determined the organs to which tumor cells metastasize. By interaction with tumor cells, CAFs were activated, transdifferentiated, and in turn enhanced the invasive ability of tumor cells. Tumor cells also promoted the infiltration of CAFs in tumor tissues, allowing them to establish a pre-metastatic microenvironment. In this review, we have deeply analyzed the association of CAFs and tumor metastasis from the perspectives of exosomes, metabolic reprogramming, suppression of anti-tumor immunity, and epigenetic modification. We also discussed the future perspectives of CAFs-based anti-metastasis strategies. This information may deepen our understanding of CAFs-initiated tumor metastasis and shed novel insight into the development of anti-metastasis therapies.
    Keywords:  Cancer; Microenvironment
    DOI:  https://doi.org/10.1016/j.isci.2026.114788
  12. Biomaterials. 2026 Feb 14. pii: S0142-9612(26)00087-6. [Epub ahead of print]330 124063
      Macrophages, as central orchestrators of tissue homeostasis, exhibit remarkable developmental and functional plasticity across diverse physiological and pathological contexts. Mechanistically, microenvironmental cues govern phenotypic switching, while dysregulated crosstalk with stromal cells drives fibrosis and chronic inflammation. Emerging therapeutic strategies targeting macrophages demonstrate potential in restoring tissue homeostasis. However, challenges persist in achieving spatiotemporal precision and balancing pro-repair versus pro-fibrotic outcomes. This review synthesizes current understanding of macrophage biology, encompassing their developmental origins, phenotypic heterogeneity in tissue-specific niches, and multifaceted roles in extracellular matrix (ECM) remodeling, immune surveillance, and organ homeostasis. A comprehensive view of the macrophage regulatory landscape highlights that precise spatiotemporal regulation serves as the cornerstone for macrophages to restore tissue homeostasis. Multiple innovative strategies, including macrophage-based drug delivery systems, cellular and genetic engineering of macrophages, and synergistic macrophage treatment modalities, are expanding the technical frontiers for disease diagnosis and therapeutic intervention. Future directions emphasize integrating multi-omics profiling, synthetic biology, and AI-aided biomaterials to develop 'smart' therapeutics that dynamically steer macrophage functionality. Such synergy will unravel context-dependent signaling and subset-specific interactions, which further advances our understanding of macrophage biology and its translational potential in resolving refractory diseases, and bridges mechanistic insights into transformative clinical applications.
    Keywords:  Biomaterials-based immunotherapy; Drug delivery; Extracellular matrix (ECM); Fibrosis and inflammation; Macrophage; Tissue-resident macrophages
    DOI:  https://doi.org/10.1016/j.biomaterials.2026.124063
  13. Nat Mater. 2026 Feb 20.
      Increased extracellular matrix deposition and stiffness promotes solid tumour progression. Yet, the precise mechanotransduction pathways, especially in less-studied mechanically responsive cancers, remain poorly understood. Here we address this gap using patient-derived tumour cells from early (mobile, T1) and advanced (immobile, T3) stages of vocal fold cancer, the most common squamous cell carcinoma severely impacting the voice box. We reveal that vocal fold cancer progression is linked to cell surface receptor heterogeneity, a loss of laminin-binding integrins in cell-cell junctions and a flocking mode of collective cell motility. Mimicking the physiological movement of healthy vocal fold tissue with stretching or vibrations decreases oncogenic β-catenin and Yes-associated protein (YAP) nuclear levels in vocal fold cancer. Multiplex immunohistochemistry of vocal fold cancer tumours shows a correlation between the extracellular matrix composition, nuclear YAP and patient survival, concordant with vocal fold cancer sensitivity to oncogenic YAP-TEAD Hippo pathway inhibitors both in vitro and in vivo. Overall, our findings suggest that vocal fold cancer is a mechanically sensitive malignancy, and that the restoration of tumour mechanophenotype or YAP/TAZ targeting represents a tractable anti-oncogenic therapeutic avenue for vocal fold cancer.
    DOI:  https://doi.org/10.1038/s41563-025-02473-7
  14. Nat Cancer. 2026 Feb 18.
      Immune checkpoint inhibition (ICI) benefits only a subset of patients with metastatic triple-negative breast cancer and determinants of response remain unclear. We assembled a longitudinal cohort of 103 female patients from the phase 2 TONIC trial, with samples spanning primary tumors, pretreatment metastases and on-treatment metastases during nivolumab therapy. We profiled 37 proteins in 270 tumors using highly multiplexed imaging and developed SpaceCat, an open-source pipeline that extracts more than 800 imaging features per sample, including cell density, diversity, spatial interactions and functional marker expression. Metastatic but not primary tumors contained features predictive of outcome. Spatial metrics such as immune diversity and T cell infiltration at tumor borders were most informative, while ratios of T cells to cancer cells and PDL1 on myeloid cells were also associated with response. Multivariate models stratified patients with the highest performance on treatment (area under the curve = 0.90). Bulk RNA-seq confirmed the predictive value of on-treatment samples. These findings highlight the value of longitudinal profiling to resolve evolving tumor microenvironment dynamics driving ICI response.
    DOI:  https://doi.org/10.1038/s43018-026-01114-5
  15. Adv Sci (Weinh). 2026 Feb 19. e16423
      Epithelial and endothelial monolayers maintain homeostasis by adapting to physiological stimuli and injury through conversion processes that remain incompletely understood. Using human umbilical vein endothelial cell cultures (HUVECs), we elucidate how monolayer maturation and mechanotransduction-induced remodeling are molecularly regulated. Maturation involves reduced cell perimeter leading to increased junctional VE-cadherin that recruits junctional actin, integrins and vinculin to establish a quiescent, stable monolayer. Remarkably, we identify a previously unrecognized, rapid and reversible intermediate-state, marked by VE-cadherin linearization (clustering) and actomyosin relaxation via myosin light chain (MLC)-dephosphorylation, that emerges during mechanotransduction-induced activation, triggered by onset or shifts in shear stress-induced mechanical load. This novel tension-mediated intermediate state enhances junctional actin, integrin and vinculin recruitment, thereby strengthening barrier function while protecting endothelial cells from overstimulation and mechanical damage. MLC rephosphorylation dissolves junctional actin, forms stress fibers and induces the formation of "Junction-Associated-Intermittent-Lamellipodia" (JAIL), enabling cell shape change and arterial phenotype remodeling. Overall, junctional VE-cadherin concentration, together with mechanosensitive signaling that reduces actomyosin tension, governs actin recruitment, revealing a tension-sensitive, intermediate state that protects cells and primes endothelial remodeling. The data provide a broader model for endothelial mechanotransduction and stress adaptation.
    Keywords:  actin‐dynamics; actomyosin contractility; cell junction dynamics; cellular conversion; integrin dynamics; mechanical stress; mechanotransduction
    DOI:  https://doi.org/10.1002/advs.202516423