bims-cesemi Biomed News
on Cellular senescence and mitochondria
Issue of 2026–02–15
twelve papers selected by
Julio Cesar Cardenas, Universidad Mayor



  1. EMBO J. 2026 Feb 11.
      STIM1 is a transmembrane protein localized in the endoplasmic reticulum (ER), where it acts as a calcium ion sensor, activating store-operated Ca2+ entry upon ER Ca2+ depletion. Via cellular calcium influx, STIM1 is thought to indirectly affect mitochondrial calcium content. Here we show that STIM1 also interacts with mitochondrial proteins such as PTPIP51 and GRP75, suggesting its presence in mitochondria-associated ER membranes (MAMs), which are specialized ER regions that facilitate ER-mitochondria communication. Lowering STIM1 expression disrupts ER-to-mitochondria Ca2+ transfer, reduces basal mitochondrial Ca2+ levels, impairs maximal mitochondrial respiration, and reduces ATP production. The STIM1-GRP75 interaction depends on STIM1's Ca2+-sensing ability. ER Ca2+ depletion or the constitutive-open R429C mutation both reduce STIM1 binding to GRP75, suggesting that conformational changes in STIM1 play a role in this interaction. Deletion analysis revealed that the STIM1 (551-611) segment is crucial for GRP75 binding, as the peptide STIM1(551-611) binds GRP75, while STIM1(Δ551-611) shows reduced binding. These findings reveal a previously unrecognized role of STIM1 in direct inter-organelle communication.
    Keywords:  Calcium; GRP75; MAM; Mitochondria; STIM1
    DOI:  https://doi.org/10.1038/s44318-026-00700-8
  2. Cold Spring Harb Perspect Biol. 2026 Feb 09. pii: a041769. [Epub ahead of print]
      Inositol 1,4,5-trisphosphate receptors (IP3Rs) are tetrameric calcium (Ca2+) release channels localized in the endoplasmic reticulum (ER), where they regulate cellular function by mediating local and global Ca2+ fluxes toward the cytosol, cell membrane, and organelles including mitochondria. Disruptions in these Ca2+ signals, whether excessive or diminished, due to alterations in IP3R function have been implicated in a wide range of diseases and pathophysiological conditions. Consequently, the Ca2+-flux properties, protein abundance, and localization of IP3Rs must be tightly regulated. Various mechanisms, including interactions with accessory proteins, ensure proper IP3R function across diverse physiological contexts. In this review, we highlight the role of posttranslational modifications (PTMs) in modulating IP3R activity, including phosphorylation/dephosphorylation, redox modifications, glycosylation, palmitoylation, ubiquitination, proteolysis, and transglutaminase-mediated cross-linking. We discuss not only the functional consequences of these PTMs but also provide structural insights when specific modified IP3R residues have been identified. Furthermore, whenever possible, we emphasize IP3R isoform-specific effects of PTMs, offering a nuanced perspective on their regulatory significance.
    DOI:  https://doi.org/10.1101/cshperspect.a041769
  3. Cell Genom. 2026 Feb 11. pii: S2666-979X(26)00030-3. [Epub ahead of print]6(2): 101168
      How does senescent cell heterogeneity vary across different cell types in the liver in aging, fibrosis, and cancer? In Cell Genomics, Karpova and Li et al. reveal cell-type- and context-specific senescent cell signatures, offering the community a valuable resource and providing the potential for future therapeutic innovation.
    DOI:  https://doi.org/10.1016/j.xgen.2026.101168
  4. J Invest Dermatol. 2026 Feb 10. pii: S0022-202X(26)00016-3. [Epub ahead of print]
      Although accumulating evidence implicates cellular senescence in acute wound healing, the precise roles of senescent cells within distinct cell lineages during this process remain elusive. To address this, we employed the p16-tdTomato reporter mouse model for labeling and isolating senescent cells from wound tissue. Longitudinal in vivo imaging monitoring revealed the temporal dynamics of tdTomato (tdTom) fluorescence, with signal detection as early as postoperative day 3, peaking by day 6. Utilizing an optimized tissue digestion protocol, we achieved high-viability FACS isolation of p16INK4a-expressing cells (tdTom+), which exhibited characteristic senescent cell morphology and marker expression. Single-cell analysis demonstrated that tdTom+ wound cells enriched with p16 expression were primarily characterized as fibroblasts and displayed common features of senescence. These findings validate the p16-tdTomato reporter mouse as a reliable model for identifying and isolating senescent cells from the wound microenvironment at single-cell resolution.
    Keywords:  Cellular senescence; Methods and techniques for skin research; Mouse model; Wound healing; p16; tdTomato
    DOI:  https://doi.org/10.1016/j.jid.2025.12.029
  5. Cells. 2026 Jan 27. pii: 248. [Epub ahead of print]15(3):
      In skeletal muscles fibers, cellular respiration, excitation-contraction (EC) coupling (the mechanism that translates action potentials in Ca2+ release), and store-operated Ca2+ entry (SOCE, a mechanism that allows recovery of external Ca2+ during fatigue) take place in organelles specifically dedicated to each function: (a) aerobic ATP production in mitochondria; (b) EC coupling in intracellular junctions formed by association between transverse tubules (TTs) and sarcoplasmic reticulum (SR) named triads; (c) SOCE in Ca2+entry units (CEUs), SR-TT junctions that are in continuity with membranes of triads, but that contain a different molecular machinery (see Graphical Abstract). In the past 20 years, we have studied skeletal muscle fibers by collecting biopsies from humans and isolating muscles from animal models (mouse, rat, rabbit) under different conditions of muscle inactivity (sedentary aging, denervation, immobilization by casting) and after exercise, either after voluntary training in humans (running, biking, etc.) or in mice kept in wheel cages or after running protocols on a treadmill. In all these studies, we have assessed the ultrastructure of the mitochondrial network and of the sarcotubular system (i.e., SR plus TTs) by electron microscopy (EM) and then collected functional data correlating (i) the changes occurring with aging and inactivity with a loss-of-function, and (ii) the structural improvement/rescue after exercise with a gain-of-function. The picture that emerged from this long journey points to the importance of the internal architecture of muscle fibers for their capability to function properly. Indeed, we discovered how the intracellular organization of the mitochondrial network and of the membrane systems involved in controlling intracellular calcium concentration (i[Ca2+]) is finely controlled and remodeled by inactivity and exercise. In this manuscript, we give an integrated picture of changes caused by inactivity and exercise and how they may affect muscle function.
    Keywords:  Ca2+ release unit (CRU); excitation-contraction (EC) coupling; mitochondria; sarcoplasmic-reticulum (SR); store-operated Ca2+ entry (SOCE); transverse tubule (TT); triad
    DOI:  https://doi.org/10.3390/cells15030248
  6. Science. 2026 Feb 12. 391(6786): 659-660
      A mitochondrial transport protein promotes carnitine synthesis in mice when fat consumption is needed.
    DOI:  https://doi.org/10.1126/science.aef2173
  7. Stem Cell Res. 2026 Feb 07. pii: S1873-5061(26)00021-8. [Epub ahead of print]91 103925
      Glioblastoma is one of the most common primary malignant brain tumors, characterized by high aggressiveness and chemoresistance. Glioma stem like cells (GSCs) are recognized as critical drivers of tumor initiation, intratumoral heterogeneity, and treatment resistance. This protocol establishes a standardized 3D-tumor spheroid assay to functionally evaluate tumor cell stemness, providing a reproducible platform for investigating glioma malignant phenotypes and screening therapeutic strategies targeting GSCs. This streamlined 96 well assay reduces detection time and resource requirements compared to traditional multi round sphere forming workflows, thereby facilitating high throughput drug screening and detailed mechanistic studies of glioma biology in both research and preclinical settings.
    Keywords:  Glioblastoma; Glioma celllines; Stemness; Tumor spheroid
    DOI:  https://doi.org/10.1016/j.scr.2026.103925
  8. Nat Metab. 2026 Feb 11.
      From insects to mammals, essential brain functions, such as forming long-term memories (LTMs), increase metabolic activity in stimulated neurons to meet the energetic demand associated with brain activation. However, while impairing neuronal metabolism limits brain performance, whether expanding the metabolic capacity of neurons boosts brain function remains poorly understood. Here, we show that LTM formation of flies and mice can be enhanced by increasing mitochondrial metabolism in central memory circuits. By knocking down the mitochondrial Ca2+ exporter Letm1, we favour Ca2+ retention in the mitochondrial matrix of neurons due to reduction of mitochondrial H+/Ca2+ exchange. The resulting increase in mitochondrial Ca2+ over-activates mitochondrial metabolism in neurons of central memory circuits, leading to improved LTM storage in training paradigms in which wild-type counterparts of both species fail to remember. Our findings unveil an evolutionarily conserved mechanism that controls mitochondrial metabolism in neurons and indicate its involvement in shaping higher brain functions, such as LTM.
    DOI:  https://doi.org/10.1038/s42255-026-01451-w
  9. J Hepatol. 2026 Feb 06. pii: S0168-8278(26)00062-0. [Epub ahead of print]
       BACKGROUND & AIMS: Weight loss is the cornerstone therapy for metabolic dysfunction-associated steatotic liver disease (MASLD). However, the optimal dietary approach for reducing intrahepatic triglycerides (IHTG) and the mechanisms underlying steatosis resolution remain poorly defined. We investigated whether weight loss via a ketogenic diet (KD) differentially affects IHTG content, hepatic mitochondrial metabolism, and the circulating metabolome compared with a non-ketogenic diet (ND).
    METHODS: Individuals with varying IHTG content underwent short-term hypocaloric KD and ND in a crossover design. Before and after each diet, IHTG was quantified by proton magnetic resonance spectroscopy and liver stiffness by magnetic resonance elastography. We used state-of-the-art isotope tracer methodology to compare KD and ND effects on in vivo rates of hepatic mitochondrial tricarboxylic acid (TCA) cycle oxidation, endogenous glucose production, and β-hydroxybutyrate production (ketogenesis). Targeted plasma metabolomics by NMR and LC-MS evaluated systemic metabolic responses.
    RESULTS: Despite similar energy deficits and body fat loss, IHTG decreased 45% more with KD than ND (-29% vs. -20%), accompanied by a threefold greater improvement in hepatic insulin sensitivity (59% vs. 21%). KD, but not ND, markedly reduced serum insulin concentrations (-54%), thereby promoting lipolysis and intrahepatic fatty acid partitioning toward mitochondrial β-oxidation, increasing hepatic mitochondrial [NADH]/[NAD+] (redox state) (+51%), and decreasing rates of hepatic mitochondrial TCA cycle oxidation (-34%). KD, but not ND, increased plasma concentrations of branched-chain amino acids, acylcarnitines, and tricarboxylic acid cycle intermediates.
    CONCLUSIONS: Both diets ameliorated MASLD, but KD produced a greater reduction in IHTG owing to a starvation-like metabolic state. However, the benefits of KD were accompanied by increased hepatic mitochondrial redox state and suppression of TCA cycle oxidation, which are features previously linked to progressive liver injury.
    IMPACT AND IMPLICATIONS: This study provides mechanistic justification for considering dietary composition, in addition to caloric restriction, as a key determinant of steatosis resolution in MASLD. The findings highlight a potential trade-off between greater short-term reductions in liver fat and the emergence of metabolic features previously associated with increased susceptibility to liver injury. While a ketogenic diet may facilitate rapid liver fat reduction in selected clinical contexts, its use should be approached cautiously, particularly in individuals with advanced MASLD. These results underscore the need for systematic evaluation of dietary composition as a determinant of both efficacy and safety of nutritional interventions for MASLD.
    CLINICAL TRIAL NUMBER: NCT03737071.
    Keywords:  caloric restriction; citric acid cycle; cross-over study; energy metabolism; fatty liver; humans; insulin resistance; ketogenic diet; metabolome; redox state; weight loss
    DOI:  https://doi.org/10.1016/j.jhep.2026.02.001
  10. Genes Dev. 2026 Feb 09.
      An emerging paradox in cancer metabolism is that identical oncogenic mutations produce profoundly different metabolic phenotypes depending on tissue context, with many mutations exhibiting striking tissue-restricted distributions. Here we introduce metabolic permissiveness as the inherent capacity of a tissue to tolerate, adapt to, or exploit metabolic disruptions, providing a unifying framework for explaining this selectivity. We examine tissue-specific metabolic rewiring driven by canonical oncogenes (MYC and KRAS), tumor suppressors (p53, PTEN, and LKB1), and tricarboxylic acid (TCA) cycle enzymes (FH, SDH, and IDH), demonstrating that baseline metabolic architecture, nutrient microenvironment, redox buffering, and compensatory pathways determine whether mutations confer a selective advantage or metabolic crisis. We further discuss how the tumor microenvironment shapes metabolic adaptation and therapeutic vulnerability. This framework reveals shared principles of tissue-specific metabolic vulnerability in cancer and provides a mechanistic basis for precision metabolic therapies.
    Keywords:  cancer; metabolism; permissiveness
    DOI:  https://doi.org/10.1101/gad.353516.125
  11. Biochim Biophys Acta Mol Basis Dis. 2026 Feb 06. pii: S0925-4439(26)00035-9. [Epub ahead of print]1872(4): 168187
      Delayed healing of diabetic wounds (DW) represents a significant complication among diabetic patients, for which current therapeutic approaches remain suboptimal. Accumulating evidence indicates that fibroblast senescence plays a critical role in the impaired healing of diabetic wounds. Abnormal mitochondrial morphology has long been associated with cellular senescence and age-related pathologies, suggesting that mitochondrial dynamics are compromised during senescence. In this study, we explored the potential mechanisms through which adipose-derived mesenchymal stem cell-derived exosomes (ADSC-Exos) facilitate diabetic wound repair. We initially confirmed the presence of a substantial number of senescent fibroblasts in diabetic wound tissues. Subsequent investigations demonstrated that exosomes derived from adipose-derived stem cells can effectively alleviate fibroblast senescence. In-depth mechanistic analyses revealed that these exosomes suppress the expression of SMARCAL1, a chromatin remodeling protein, thereby enhancing the transcription of mitochondrial dynamin-related protein 1 (Drp1), and ultimately restoring mitochondrial dynamics and alleviating senescence in human dermal fibroblasts (HDFs). In vivo experiments further demonstrated that exosome administration significantly reduced HDFs senescence and accelerated wound healing in a diabetic mouse model. Collectively, our findings suggest that ADSC-Exos promote diabetic wound healing by mitigating HDFs senescence via the SMARCAL1-Drp1-mitochondrial dynamics pathway. This study elucidated the molecular mechanisms underlying exosome-mediated fibroblast senescence rescue and proposed a novel therapeutic strategy for diabetes-related wound management through targeted clearance of senescent cells.
    Keywords:  Adipose-derived mesenchymal stem cell-derived exosomes; Cellular senescence; Chromatin remodeling; Diabetic wounds; Mitochondrial dynamics
    DOI:  https://doi.org/10.1016/j.bbadis.2026.168187
  12. Science. 2026 Feb 12. 391(6786): 657-658
      Fragments of aberrant cytoplasmic mRNA pair with nuclear RNAs to augment transcription.
    DOI:  https://doi.org/10.1126/science.aee7910