bims-celmim Biomed News
on Cellular and mitochondrial metabolism
Issue of 2026–10–11
nineteen papers selected by
Marc Segarra Mondejar, AINA



  1. Sci Adv. 2026 Oct 09. 12(41): eaeg8687
      The retina metabolizes glucose into lactate, a hallmark of aerobic glycolysis known as the Warburg effect. Although evidence points to rod photoreceptors as the primary source of aerobic glycolysis, a comparison of the energy metabolism in different retinal neurons has yet to be performed. We combined two-photon fluorescence lifetime imaging of biosensors with pharmacological protocols to analyze metabolic dynamics in healthy and diseased rod photoreceptors and RBPMS-positive ganglion and calretinin-positive amacrine cells. Our data reveal distinct metabolic profiles among retinal neurons, identify rods as the drivers of aerobic glycolysis, demonstrate that inner retinal neurons rely on oxidative phosphorylation, show that rods need both glycolysis and oxidative phosphorylation to maintain ATP levels, and suggest that rods can metabolize lactate. A mutation causing retinitis pigmentosa increases lactate production in rods but changes the energy metabolism only subtly otherwise. Our results improve the understanding of retinal physiology and are relevant for pathologies involving imbalanced energy metabolism.
    DOI:  https://doi.org/10.1126/sciadv.aeg8687
  2. Signal Transduct Target Ther. 2026 Oct 06. pii: 425. [Epub ahead of print]11(1):
      Glutamine is the most abundant free amino acid in the body. It plays a central role in cellular metabolism, connecting synthetic and catabolic pathways, and maintaining life activities under physiological and pathological conditions. This review systematically explores the dual role of glutamine metabolism in health and disease. Glutamine is not only the main energy and nitrogen source for rapidly proliferating cells, such as immune cells, intestinal epithelial cells, and cancer cells but also participates in several key biological processes, such as nucleotide synthesis, REDOX balance, and immune regulation. Glutamine metabolism is often abnormally activated or disrupted in disease states, such as "glutamine addiction" in cancer and excitotoxicity and mitochondrial dysfunction in neurodegenerative diseases. Disorders of glutamine metabolism are also present in metabolic diseases (such as diabetes and MAFLD) and cardiovascular diseases. In addition, gut microbes regulate host glutamine metabolism through metabolites and signaling pathways, further affecting the disease process. Therapeutic strategies to target glutamine metabolism include inhibition of key enzymes or transporters, as well as exogenous glutamine supplementation. However, the effects of these strategies are context-dependent and need to be applied individually according to the specific pathological status of patients. Future research should focus on tissue-specific metabolic profiling, integrated multiomics analysis, and the development of combined treatment strategies to fully realize the potential of glutamine metabolism in disease treatment.
    DOI:  https://doi.org/10.1038/s41392-026-02981-1
  3. J Immunol. 2026 Oct 01. pii: vkag234. [Epub ahead of print]215(10):
      Immune checkpoint inhibitor (ICPI) therapy, targeting Programmed cell death protein 1 (PD-1) and its ligands PD-L1 and PD-L2, have revolutionized cancer care. However, ICPI is linked to immune-related adverse events, including nephropathy manifesting as acute kidney injury (AKI), a rapid decline in kidney function, often progressing to renal failure. Regulatory T cells (Tregs) could mitigate AKI, caused by ischemia-reperfusion injury (IRI). Treg stability and function rely on cellular metabolism, with a distinct preference for oxidative phosphorylation (OXPHOS) over glycolysis. Although PD-1 is known to regulate metabolism of CD8 T cells, its role in controlling OXPHOS in Tregs remains underexplored. We demonstrate that PD-1 knockout (KO) mice have worse renal function after IRI when compared to wild-type mice. PD-1-deficient Tregs lose their protective ability against AKI despite retaining in vitro suppressive activity and Foxp3 expression. Transcriptomic analysis reveals altered expression of genes linked to function, proliferation, and mitochondrial metabolism in PD-1 KO Tregs as compared to wild-type Tregs. PD-1 KO Tregs exhibit reduced mitochondrial mass, membrane potential, biogenesis, and dynamics, leading to impaired mitochondrial fitness and trends for reduced expression of fatty acid transporters CD36 and Cpt1a and Glut1. Loss of PD-1 expression or antibody-mediated blockade of PD-1 attenuated OXPHOS and expression of genes related to mitochondrial metabolism in Tregs. These metabolic defects may stem from morphological alterations in mitochondria, highlighting the critical role of PD-1 in Treg-mediated nephroprotection. Our findings reveal the metabolic vulnerability of PD-1-deficient Tregs and underscore the importance of PD-1 in Treg-mediated protection against AKI with implications for ICPI-related nephropathy.
    Keywords:  AKI; PD-1; Treg; metabolism; mitochondria
    DOI:  https://doi.org/10.1093/jimmun/vkag234
  4. Proc Natl Acad Sci U S A. 2026 Oct 13. 123(41): e2617216123
      Epithelial tissues undergo dynamic transitions between fluid-like collective motion and mechanically jammed states during development, injury repair, and disease progression. However, the cellular programs that drive these transitions and regulate collective behavior remain unclear. Using a controlled crowding model integrated with live-cell imaging and time-resolved multiomics, we demonstrate that epithelial crowding triggers early metabolic changes characterized by increased mitochondrial pyruvate anaplerosis that precedes the jamming transition. Restricting mitochondrial pyruvate import increased collective cell motility and delayed jamming in crowded monolayers. This unjammed state is driven by enhanced cytoskeletal remodeling and requires RhoA-myosin II activity. Mechanistically, we show that elevated cytoskeletal signaling promotes macropinocytic uptake, which serves as a required feedback loop to maintain motility. These findings identify mitochondrial pyruvate utilization as an important regulatory input linking metabolic remodeling to the endocytic control of epithelial fluidity.
    Keywords:  collective cell migration; epithelial jamming transition; mechanobiology
    DOI:  https://doi.org/10.1073/pnas.2617216123
  5. FASEB J. 2026 Oct 15. 40(19): e72361
      Sirtuin-1 (SIRT1) is an NAD+-dependent deacetylase implicated in autophagosome formation; however, whether SIRT1 also regulates autophagosome clearance during late-stage autophagy remains unclear. Here, we investigated the role of SIRT1 in autophagosome clearance during autophagy and mitophagy in cardiomyocytes. Mitochondrial stress induced by carbonyl cyanide m-chlorophenyl hydrazone (CCCP) decreased mitochondrial protein levels and increased phosphorylation of ubiquitin, a PINK1 target, in H9c2 cardiomyocytes. These CCCP-induced decreases in mitochondrial proteins were prevented by co-treatment with chloroquine, an inhibitor of lysosomal degradation, supporting the induction of CCCP-triggered mitophagy. SIRT1 knockdown similarly prevented the CCCP-induced reduction in mitochondrial proteins and led to the accumulation of autophagosomes containing fragmented mitochondria without attenuating ubiquitin phosphorylation, suggesting that SIRT1 acts downstream of mitochondrial tagging. Tandem GFP-RFP LC3 assay and LC3-LAMP1 colocalization analysis demonstrated impaired autophagosome-lysosome fusion following SIRT1 knockdown. In vivo, cardiomyocyte-specific SIRT1 knockout mice exhibited elevated basal LC3-II levels and a blunted LC3-II response to chloroquine, consistent with impaired autophagic flux. In a doxorubicin (DOX)-treated model, SIRT1 deficiency attenuated autophagosome degradation during the early period after DOX administration. Mechanistically, SIRT1 interacted with Rab7, a key regulator of autophagosome-lysosome fusion, raising the possibility that SIRT1 might regulate fusion through post-translational modification of Rab7 or related components. Collectively, these findings identify SIRT1 as a regulator of autophagosome-lysosome fusion that promotes autophagosome degradation during autophagy and mitophagy in cardiomyocytes.
    Keywords:  Sirtuin‐1; autophagosome–lysosome fusion; autophagy; doxorubicin; mitophagy
    DOI:  https://doi.org/10.1096/fj.202601047R
  6. Elife. 2026 Oct 08. pii: RP111498. [Epub ahead of print]15
      As organisms age, mitochondrial metabolic activity declines, and disrupted gene expression regulation mediated by histone acetylation induces the emergence of senescent physiological phenotypes in tissues. In this study, we found that periodic exposure to red light significantly increased histone H3 Lys9 acetylation (H3K9ac) levels in the tissues and organs of aged mice. Following red light exposure, silent information regulation factor 4 (SIRT4) protein levels in keratinocytes were notably reduced, whereas glycolysis, fatty acid metabolism, and the tricarboxylic acid (TCA) cycle were significantly activated in keratinocytes. The reduction in mitochondrial SIRT4 levels enhances the acetylation of mitochondrial metabolic proteins, particularly malonyl-CoA decarboxylase, a potent inhibitor of the key rate-limiting enzyme carnitine palmitoyltransferase 1A (CPT1A) in fatty acid oxidation. This process promotes mitochondrial fatty acid oxidation and the TCA cycle. Additionally, the decrease in SIRT4 activates SIRT1 through feedback mechanisms, thereby alleviating its inhibition on PPAR-α in senescent keratinocytes and comprehensively activating the expression of genes related to lipid metabolism. This lipid metabolism activation ultimately facilitates the accumulation of acetyl-CoA within keratinocytes, increases H3K9ac levels, and reshapes the expression patterns of senescence-related genes. Eventually, cellular aging is effectively mitigated by the synergistic regulation of metabolism, inflammation, and gene expression.
    Keywords:  H3K9ac; SIRT4; cell biology; fatty acid metabolism; mouse; red light; skin aging
    DOI:  https://doi.org/10.7554/eLife.111498
  7. bioRxiv. 2026 Aug 12. pii: 2026.08.10.743872. [Epub ahead of print]
      Successful oogenesis requires the precise coordination of nutrient uptake, storage, and utilization to meet the high metabolic demands of egg production. In mammals, fatty acid (FA) metabolism has emerged as a key driver of oocyte maturation; however, the mechanisms by which follicles regulate FA trafficking and utilization remain poorly understood across all systems. To address these issues, we leverage the genetic tractability of Drosophila melanogaster oogenesis. We found that nurse cell mitochondria are metabolically active and catabolize FA in a stage-dependent manner, with fatty acid oxidation (FAO) peaking during mid-oogenesis. By exposing explanted follicles to fluorescently labeled FAs, we monitored FA trafficking and found massive enrichment in lipid droplets. Mutants for the triglyceride lipase ATGL exhibited a reduction in both mitochondrial membrane potential and FAO, suggesting that mitochondria utilize FA from triglycerides stored in LDs. To determine the significance of this transient FA storage in LDs, we prevented the formation of nurse cell LDs with mutations in the triglyceride synthase DGAT1. The DGAT1 mutant follicles display excess accumulation of FAs in mitochondria, mitochondrial stress, and developmental arrest. We find that this mitochondrial dysfunction and follicle arrest are consequences of FA toxicity to mitochondria: limiting FA influx into follicles or FA import into mitochondria alleviates these defects. Our findings demonstrate that LD-derived FAs are actively mobilized to fuel the energy demands of oogenesis while LDs buffer against lipotoxicity, revealing a critical balance between FA storage and oxidation. These findings highlight LDs as central hubs regulating energy homeostasis and developmental progression in the follicle.
    Author Summary: Oogenesis places extraordinary metabolic demands on the follicle, yet the energy source for follicle development is not well understood. In fruit flies, follicles take in large amounts of lipids from the hemolymph, the insect blood, and accumulate massive fat stores in the form of lipid droplets. Whether these stores are reserved for the embryo or already power oogenesis was unclear. Using mutants and fluorescent probes for metabolic activity, we found that some fatty acids are released from the lipid droplets and power energy production in mitochondria; this energy source is important for successful oogenesis. We then fed flies fluorescently labeled fatty acids and determined how these fatty acids travel when lipid droplet formation can occur versus when it is abolished. In the former case, fatty acids accumulate in lipid droplets; in the latter, they flood into mitochondria, causing mitochondrial dysfunction, reduced ATP levels, and follicle death. We can correct all these defects by limiting lipid influx specifically into mitochondria. Our findings reveal an important role for lipid droplets during oogenesis. They act as a metabolic buffer, supplying sufficient amounts of fatty acids to mitochondria for energy production while shielding the mitochondria from toxic lipid levels.
    DOI:  https://doi.org/10.64898/2026.08.10.743872
  8. Mitochondrion. 2026 Oct 08. pii: S1567-7249(26)00113-3. [Epub ahead of print] 102223
      Growing fibroblasts in medium containing galactose instead of glucose makes cells more dependent on oxidative phosphorylation (OXPHOS) rather than glycolysis. Recently, it has been shown that treatment with nicotinamide adenine dinucleotide (NAD+) improves cell viability of human OXPHOS Complex I-deficient skin fibroblasts in this OXPHOS-reliant condition. To study the effects of NAD+ precursors in this model, we supplemented the cells with trigonelline (TG), nicotinamide (NAM), nicotinamide riboside (NR), nicotinamide mononucleotide (NMN) and found no improvement in cell viability, while supplementation with niacin (NA) did partially. Interestingly, cell viability was improved by addition of the NAD+ building block adenosine monophosphate (AMP). Metabolic profiling showed a decrease in inosine monophosphate (IMP), a purine intermediate, under OXPHOS-reliant condition. Treatment with AMP and adenosine under this condition increased the IMP levels. Among nucleosides, only adenosine and guanosine treatments in OXPHOS-reliant condition improved the patient cell viability. Therefore, we conclude that OXPHOS-reliant condition limited purine nucleotide biosynthesis and salvage pathways, which could be overcome by increasing IMP levels. Together, our results reveal a previously unrecognized role for purine metabolism under OXPHOS-reliant condition, highlighting it as a candidate for therapeutic intervention.
    Keywords:  Complex-I deficiency; Galactose medium; NAD(+) homeostasis; Primary mitochondrial disease; Purine metabolism
    DOI:  https://doi.org/10.1016/j.mito.2026.102223
  9. Nat Commun. 2026 09 04. pii: 10520. [Epub ahead of print]17(1):
      Astrocytes modulate neuronal activity by gliotransmission and through metabolic regulation, yet the relationship between these functions remains poorly understood. Here we show that phosphatidylinositol 3-kinase (PI3K) signaling in astrocytes controls synaptic plasticity and memory by regulating cellular metabolism. Deletion of the p110α isoform of PI3K in hippocampal astrocytes impairs NMDA receptor activation during the induction of hippocampal long-term potentiation (LTP). This defect is rescued by either D-serine (co-agonist of synaptic NMDA receptors) or its precursor L-serine, indicating that PI3K regulates synaptic plasticity through serine availability. Indeed, deletion of p110α rewires astrocyte metabolism, reducing glycolytic flux while enhancing mitochondrial respiration. This, in turn, would limit L-serine biosynthesis through the phosphorylated pathway. Consistently, mice lacking astrocytic p110α display memory deficits that are rescued by in vivo L-serine administration. These findings identify astrocytic PI3K p110α as a key link between cellular metabolism, synaptic plasticity and cognition.
    DOI:  https://doi.org/10.1038/s41467-026-77319-0
  10. Commun Biol. 2026 Oct 06. pii: 1298. [Epub ahead of print]9(1):
      Hypoxia contributes to tumor progression, abnormal blood vessel formation, immune suppression, and therapeutic resistance. Although hypoxia is traditionally viewed as the primary driver of glycolysis, intrinsic oncogenic signaling, mitochondrial dysfunction, and epigenetic reprogramming also stimulate glycolysis independently of oxygen limitation, leading to substantial lactic acid accumulation under oxygenated conditions. Beyond its classic role in metabolism, lactic acid is a bioactive molecule that shapes tumor physiology by influencing immune responses, driving vascular remodeling, and mediating metabolic interactions among tumor and stromal populations. In this Perspective, we propose that cancer-derived lactic acid may contribute to the development and persistence of hypoxic tumor regions and sustain hypoxia-associated signaling. This framework positions lactic acid not only as a consequence of hypoxia but also as a potential upstream driver, forming a self-reinforcing glycolysis-lactic acid-hypoxia feedback loop that can be therapeutically disrupted by targeting lactic acid production or transport.
    DOI:  https://doi.org/10.1038/s42003-026-11151-6
  11. Cell Rep. 2026 Oct 07. pii: S2211-1247(26)01183-6. [Epub ahead of print]45(10): 118104
      Metabolic reprogramming of immune cells is emerging as a therapeutic strategy for autoimmune diseases. Here, we identify mesenchymal stem/stromal cell (MSC)-derived lactate as a signaling metabolite that reprograms monocyte metabolism and differentiation. GM-CSF enhanced glycolytic activity in bone marrow cells and expanded pro-inflammatory monocytes, whereas pharmacologic inhibition of glycolysis with 2-deoxy-D-glucose reversed these effects. MSC coculture suppressed glycolytic activation and redirected monocyte differentiation toward an immunosuppressive phenotype. MSCs produced lactate in a hypoxia-inducible factor 1α (HIF-1α)-dependent manner, and blocking lactate production through oxamate treatment or HIF1A knockdown attenuated the effects of MSCs on differentiating monocytes, whereas exogenous lactate recapitulated them. In experimental autoimmune uveoretinitis, intravenous administration of MSCs ameliorated the disease, but oxamate-pretreated or HIF1A-knockdown MSCs exhibited reduced efficacy. The HIF-1α-lactate axis may therefore represent a targetable pathway for optimizing MSC-based therapies and for developing lactate-centered interventions in autoimmune diseases.
    Keywords:  CP: immunology; CP: metabolism; HIF-1α; MSC; bone marrow; experimental autoimmune uveoretinitis; glycolysis; lactate; mesenchymal stem/stromal cell; monocyte; myeloid-derived suppressor cell
    DOI:  https://doi.org/10.1016/j.celrep.2026.118104
  12. Trends Biochem Sci. 2026 Oct 09. pii: S0968-0004(26)00284-7. [Epub ahead of print]
      Protein phosphorylation is a central and reversible mechanism regulating virtually all cellular processes and is classically mediated by the canonical protein kinome and phosphatome. However, beyond their traditional roles as metabolic catalysts, a subset of metabolic enzymes also exhibits noncanonical 'moonlighting' activities as protein kinases or phosphatases, directly linking metabolic states to phosphorylation-dependent signaling. These unexpected functions of enzymes involved in glucose, fructose, lipid, nucleotide, and creatine metabolism influence a broad spectrum of cellular processes, including chromatin remodeling, transcription, cell cycle progression, metabolism, autophagy, cell survival and death, and immune responses. As a result, metabolic enzymes are increasingly recognized as key regulators that bridge cellular metabolism and signaling networks, with important implications for both normal physiology and disease.
    Keywords:  cancer; creatine metabolism; fructose metabolism; glycolysis; lipid metabolism; nucleotide metabolism
    DOI:  https://doi.org/10.1016/j.tibs.2026.09.006
  13. Elife. 2026 Oct 05. pii: RP110428. [Epub ahead of print]15
      Diabetes mellitus is a rapidly growing global health challenge, necessitating the development of more effective anti-diabetic therapies, including drugs that improve insulin release from pancreatic β-cells. Traditional high-throughput screening methods typically rely on 2D β-cell cultures, but such cultures do not mimic the 3D organization and cell-to-cell communication of β-cells in pancreatic islets of Langerhans. Existing 3D β-cell culture models are hindered by high costs, technical complexity, and limited compatibility with high-throughput screening platforms. In this work, we developed an approach for generating 19 homogeneously shaped pancreatic β-cell spheroids in each well of a 96-well plate, using micropatterned polyethylene glycol (PEG)-based hydrogels and murine mouse insulinoma 6 (MIN6) insulinoma cells. The uniform shape and positioning of the individual spheroids enabled the simultaneous, real-time imaging of Ca2+ signals in up to 1824 independent spheroids in response to glucose and various test compounds. Using this approach, we show that increasing glucose causes concentration-dependent Ca2+ oscillations in individual spheroids, that these Ca2+ oscillations are sensitive to modulators of ATP-sensitive K+ channels, and that the frequency of Ca2+ oscillations correlates with insulin secretion. Finally, we demonstrate that the neurosteroid pregnenolone sulfate, an agonist of the cation channel TRPM3, increases the frequency of glucose-induced Ca2+ oscillations and enhances insulin release; the TRPM3 antagonist isosakuranetin inhibited these responses. In conclusion, we established a cost-effective and scalable 3D β-cell platform for high-throughput screening of insulin release-modifying compounds, with potential applications in drug development and personalized medicine for the management of diabetes mellitus.
    Keywords:  TRPM3; calcium signaling; cell biology; insulin; mouse; spheroid; β-cell
    DOI:  https://doi.org/10.7554/eLife.110428
  14. Nat Rev Immunol. 2026 Oct 07.
      The metabolism of immune cells must adapt dynamically to support their diverse functions. B cells, which are the key cellular mediators of humoral immunity, undergo extensive metabolic changes throughout their development and function, starting from their commitment to the B cell lineage in the bone marrow. In the periphery, further rounds of metabolic adaptation in B cells are driven by temporally regulated changes in signalling cues, energetic demands and nutrient availability within specialized tissue niches. Although they have historically been less well studied than other immune cell types, emerging evidence shows that B cells deploy mechanistically distinct metabolic strategies that are tightly linked to their effector identity. Recognizing B cell metabolism as its own biological entity is, therefore, crucial to the study of humoral immune responses. In this Review, we examine the metabolic pathways that regulate B cell homeostasis, their integration with cell signalling networks, and their adaptation to the metabolic environment across spatial and temporal scales. We further discuss how aberrations in these pathways can contribute to B cell-driven malignancies, autoimmunity, inborn errors of immunity, and B cell-tropic infections. We position B cell metabolism as a rapidly expanding frontier within immunometabolism in both health and disease.
    DOI:  https://doi.org/10.1038/s41577-026-01355-6
  15. Front Immunol. 2026 ;17 1913444
      Gastric cancer remains one of the leading causes of cancer-related death worldwide, with particularly high incidence in East Asia. Despite improvements in surgical resection and perioperative chemotherapy, patients with advanced or metastatic disease face a poor prognosis. The arrival of ICIs, especially anti-PD-1 antibodies such as nivolumab, has offered new treatment options. The landmark CheckMate 649 trial showed that adding nivolumab to chemotherapy significantly improves overall survival in advanced GC, gastroesophageal junction cancer, and esophageal adenocarcinoma. However, longer-term follow-up analyses have made it clear that a substantial proportion of patients either do not respond initially or relapse after an initial response. Thus, there is an urgent need to understand the mechanisms behind immunotherapy resistance.
    Keywords:  CLEVER- 1; PD-1 inhibitor resistance; gastric cancer; metabolic reprogramming; tumor-associated macrophages
    DOI:  https://doi.org/10.3389/fimmu.2026.1913444
  16. FASEB J. 2026 Oct 15. 40(19): e72346
      Mitochondria serve as the primary cellular powerhouses, generating ATP through oxidative phosphorylation (OXPHOS) to sustain essential cellular processes. Beyond energy production, mitochondria function as critical regulators of metabolic homeostasis, intracellular signaling networks, and programmed cell death pathways. The mitochondrial genome comprises 37 genes encoding 13 OXPHOS subunits, 22 transfer RNAs, and 2 ribosomal RNAs, all transcribed and translated within the organelle. Mitochondrial DNA integrity becomes compromised through diverse pathological stimuli, including metabolic dysregulation, oxidative stress, and inflammatory cascades, contributing to disease pathogenesis across multiple organ systems. This review synthesizes current knowledge on the multifaceted roles of mtDNA in health and disease. We propose a framework of three interconnected mechanisms through which mtDNA exerts its effects: (1) retrograde signaling to the nucleus, reprogramming nuclear gene expression; (2) cytosolic and extracellular release of mtDNA as a damage-associated molecular pattern (DAMP), activating innate immune pathways like cGAS-STING and NLRP3; and (3) intrinsic epigenetic modifications that directly modulate mitochondrial gene expression. We critically evaluate the evidence linking mtDNA alterations to a spectrum of diseases, including cancer, cardiovascular and metabolic disorders, neurodegeneration, and psychiatric conditions. We conclude that a comprehensive understanding of mtDNA's multifaceted nature, moving beyond its perception as a mere DAMP, is essential for translating mitochondrial biology into effective clinical interventions.
    Keywords:  diseases process; mitochondrial function; molecular mechanisms; mtDNA; pathophysiology
    DOI:  https://doi.org/10.1096/fj.202600927R
  17. Biochim Biophys Acta Rev Cancer. 2026 Oct 05. pii: S0304-419X(26)00205-2. [Epub ahead of print]1881(6): 189733
      Breast cancer remains the most frequently diagnosed malignancy and a leading cause of cancer-related mortality among women worldwide. Despite substantial advances in endocrine therapy, human epidermal growth factor receptor 2 (HER2)-targeted therapy, chemotherapy, and immunotherapy, therapeutic resistance and metastatic progression remain major clinical challenges. Accumulating evidence has established metabolic reprogramming as a fundamental hallmark of breast cancer, enabling tumor cells to adapt dynamically to nutrient limitation, hypoxia, oxidative stress, and therapeutic pressure. Beyond the classical Warburg effect, breast cancer cells exhibit remarkable metabolic plasticity through coordinated reprogramming of glycolysis, oxidative phosphorylation (OXPHOS), glutamine metabolism, lipid metabolism, and one‑carbon metabolism. These metabolic alterations not only sustain bioenergetic and biosynthetic demands but also reshape the tumor microenvironment (TME), promote immune evasion, maintain cancer stemness, and facilitate metastatic dissemination. Recent studies further reveal that metabolic heterogeneity varies substantially across molecular subtypes, metastatic niches, and treatment-resistant cell populations. In parallel, stromal cells, cancer-associated fibroblasts (CAFs), tumor-associated macrophages (TAMs), and immune cells establish complex metabolic symbiotic relationships with tumor cells through metabolite exchange and immunometabolic regulation. Importantly, therapy-induced metabolic adaptation has emerged as a central mechanism underlying resistance to chemotherapy, endocrine therapy, HER2-targeted therapy, CDK4/6 inhibitors, and immune checkpoint blockade. In this review, we comprehensively summarize the molecular mechanisms governing metabolic reprogramming and metabolic plasticity in breast cancer, with particular emphasis on how they contribute to tumor progression, metastasis, immune escape, and therapeutic resistance. We further discuss emerging therapeutic strategies targeting glycolysis, mitochondrial metabolism, glutamine utilization, lipid metabolism, ferroptosis-associated pathways, and immunometabolic vulnerabilities. Finally, we highlight current challenges in clinical translation, including metabolic heterogeneity, compensatory pathway activation, and limited therapeutic selectivity, and outline future directions that integrate multi-omics profiling, spatial metabolomics, and precision metabolic targeting for individualized breast cancer therapy.
    Keywords:  Breast cancer; Cancer stem cells; Ferroptosis; Immunometabolism; Lipid metabolism; Metabolic plasticity; Metabolic reprogramming; Oxidative phosphorylation; Therapeutic resistance; Tumor microenvironment
    DOI:  https://doi.org/10.1016/j.bbcan.2026.189733
  18. Stem Cell Reports. 2026 Oct 08. pii: S2213-6711(26)00326-7. [Epub ahead of print] 103115
      Epigenetic regulation of stem cell fate requires tight coordination with cellular metabolism; however, key downstream effectors remain poorly defined. Here, we show that lysine-specific demethylase 1 (LSD1) governs metabolic programs essential for stemness in human fetal neural stem cells. LSD1 inhibition induced a pronounced glycolytic shift accompanied by altered lineage commitment, characterized by suppression of neuronal differentiation and promotion of astrocytic fate. Machine learning-based Elastic Net analysis of transcriptomic data identified a subset of metabolic genes, including PLPP2 and CPT1A, which regulate phospholipid metabolism and mitochondrial fatty acid oxidation, as key downstream effectors of LSD1. Functional perturbation experiments showed that knockdown of these candidates attenuated LSD1 inhibition-induced glycolytic activation and ameliorated distinct differentiation phenotypes. Chromatin immunoprecipitation sequencing revealed LSD1 occupancy at metabolic gene loci, supporting their transcriptional repression by LSD1. Together, these findings identify LSD1 as an epigenetic gatekeeper preserving stemness by restraining glycolysis and inappropriate lineage commitment.
    Keywords:  LSD1; epigenetic regulation; glycolysis; machine learning; metabolic reprogramming; neural stem cells; neuronal differentiation
    DOI:  https://doi.org/10.1016/j.stemcr.2026.103115
  19. bioRxiv. 2026 Aug 13. pii: 2026.08.07.743580. [Epub ahead of print]
      Recent advances in fluorescent indicators and optical microscopy now enable in vivo synaptic imaging of glutamate, which transmits the majority of signals between neurons in the brain. Extracting fluorescence signals from these recordings is complicated by the minuscule scale and dense clustering of synapses on dendrites, as well as brain motion in behaving animals. Here we present the Glutamate Imaging Analysis Toolbox (GIAnT), a set of automated tools for glutamate imaging data that corrects sample motion, identifies active synapses with super-resolution precision, and extracts synaptic fluorescence signals. Compared to methods designed for cellular imaging, GIAnT reduces motion artifacts, more accurately identifies active synapses, and improves extracted signal quality by reducing contamination from overlapping synapses. By pairing in vivo glutamate imaging with post hoc expansion microscopy, we find that >70% of the putative synapses extracted using GIAnT matched one-to-one with glutamatergic synapses onto the postsynaptic cell. Our results establish GIAnT as an automated and validated pipeline for processing synaptic glutamate imaging data at scale.
    DOI:  https://doi.org/10.64898/2026.08.07.743580