bims-cediti Biomed News
on Cell death in innate immunity, inflammation, and tissue repair
Issue of 2026–02–22
fifteen papers selected by
Kateryna Shkarina, Universität Bonn



  1. mBio. 2026 Feb 18. e0385525
      Pyroptosis is an inflammatory cell death pathway that is a key defense mechanism of intestinal epithelial cells. To successfully establish an infection, intracytosolic gram-negative pathogens must block this host response. Indeed, a Shigella effector OspC3, injected into cells by its type III secretion system, suppresses epithelial pyroptosis by targeting and inactivating caspase-4 (CASP4). Here, we demonstrate that OspC2, which shares 96% identity with OspC3, targets caspase-5 (CASP5), a close paralog of CASP4. Through a combination of yeast two-hybrid, transfection, and bacterial infection assays, we show that the distinct pyroptotic caspase specificities of OspC2 and OspC3 are determined by a short α-helical region, designated the pyroptotic caspase specificity (PCS) domain. This domain is located upstream from the ankyrin-rich repeat (ARR) region previously established to promote OspC3 binding to CASP4. Swapping PCS domains between OspC2 and OspC3 is sufficient to redirect their caspase targeting. Evidence for CASP5-driven pyroptosis in response to infection has not yet been established. However, CASP5 displays signatures of positive selection at residues predicted to interact with the PCS domain of OspC2. Notably, the introduction of orangutan-specific residues into human CASP5 disrupts its interaction with and modification by OspC2, demonstrating that CASP5 natural variation can cause key functional differences in this host-microbe molecular interaction. These findings highlight the evolutionary interplay between bacterial effectors and host proteins, support a likely role for CASP5 in responding to gram-negative bacteria, and identify promising therapeutic targets for enhancing epithelial defense against bacterial pathogens.IMPORTANCEShigella species are human-specific gram-negative pathogens that establish a replicative niche in intestinal epithelial cells by blocking pyroptosis, a key inflammatory cell death pathway. We reveal that two closely related Shigella type III secreted effectors, OspC2 and OspC3, specifically inactivate the human caspase paralogs CASP5 and CASP4, respectively. This specificity is determined by their newly identified pyroptotic caspase specificity (PCS) domains. In addition, we find that positively selected residues in CASP5 alter the OspC2/CASP5 interaction, underscoring the impacts of ongoing evolutionary arms races between bacterial effectors and host immune proteins. By elucidating the molecular basis of caspase targeting and adaptation, this work provides new insight into the diversification of host defense mechanisms and identifies potential therapeutic targets for enhancing epithelial resistance to bacterial infection.
    Keywords:  CASP5; OspC2; Shigella; effector; pyroptotic caspase specificity; t3SS
    DOI:  https://doi.org/10.1128/mbio.03855-25
  2. Nat Microbiol. 2026 Feb 20.
      Intracellular bacterial pathogens can cause high levels of morbidity and mortality in humans. Host immune responses that protect against these infections include pyroptosis, a form of lytic cell death caused by the insertion of large gasdermin (GSDM) pores into the host plasma membrane. Here we review recent advances in our understanding of how the five GSDM proteins, GSDMA-E, are activated by distinct signalling pathways. Pyroptosis can both eliminate intracellular niches and release cytosolic interleukin-1 family cytokines that further prime host immune responses against the invading pathogen. Because pyroptosis targets microbes, host-adapted intracellular pathogens have evolved strategies to efficiently subvert it. However, environmental pathogens fail to evade, making pyroptosis a potent barrier against infection. We summarize recent findings for the host-adapted bacterial pathogens Shigella flexneri, Salmonella enterica serovar Typhimurium and Mycobacterium tuberculosis, contrasted with the environmental bacteria Burkholderia thailandensis and Chromobacterium violaceum.
    DOI:  https://doi.org/10.1038/s41564-026-02272-z
  3. Immunity. 2026 Feb 16. pii: S1074-7613(25)00573-4. [Epub ahead of print]
      The non-canonical inflammasome, comprising caspase-4 in humans, initiates pyroptosis upon sensing cytosolic lipopolysaccharide (LPS) from Gram-negative bacteria. Caspase-4 activation also depends on several guanylate-binding proteins (GBPs), which associate with the surface of cytosolic bacteria. Here, we investigated how caspase-4 accesses its cognate ligand, the hydrophobic lipid A moiety of LPS, and the role of GBPs in this process. GBP1 was essential for caspase-4 activation during infection. Mechanistically, GBP1 deformed the LPS-containing outer membrane of cytosolic bacteria, acting as a GTP-dependent mechanoenzyme. In vitro, GBP1 fragmented LPS micelles and promoted caspase-4/LPS complex formation, thereby enhancing LPS-induced caspase-4 activation. Fragmented LPS micelles presented additional micelle tips that served as binding and activation sites for caspase-4, indicating that caspase-4 engages LPS membranes with defined geometry rather than individual LPS molecules. Thus, GBP-mediated deformation of the LPS-rich outer bacterial membrane generates regions of positive curvature that expose lipid A, enabling caspase-4 binding, oligomerization, and activation.
    Keywords:  GBP1; LPS; caspase-4; inflammasomes; innate immunity; lipopolysaccharide sensing; membrane curvature
    DOI:  https://doi.org/10.1016/j.immuni.2025.12.017
  4. Nat Commun. 2026 Feb 18. 17(1): 1658
      Self-DNA triggers cGAS-STING-mediated type I interferon (IFN-I) to induce both protective and pathogenic immune responses; however, how self-DNA activates the cytosolic cGAS-STING pathway remains unclear. Here we show that the cGAS/STING/IFN-I axis is activated by self-DNA via a process termed 'nucleocytosis', in which nuclear DNA is extracted from dying cells by macrophages. Mechanistically, lysosomal malfunction, via both proton loss and palmitoyl-protein thioesterase 1 (PPT1) inhibition, triggers cell death and calreticulin accumulation in the nuclei. Live-cell imaging of secretion activity reveals that macrophages access the calreticulin-enriched nuclei of dying cells and extract DNA for cGAS-STING activation. Consistent with these findings, PPT1-targeting cationic amphiphilic drugs induce a cGAS-STING-dependent IFN-I response in vitro and in vivo. Our findings thus identify nucleocytosis as a macrophage function for nuclear DNA extraction and induction of the cGAS/IFN-I axis, and suggest that nucleocytosis-inducing cell death could be a druggable target for treating self-DNA-related inflammatory diseases.
    DOI:  https://doi.org/10.1038/s41467-026-68839-w
  5. Structure. 2026 Feb 19. pii: S0969-2126(26)00013-4. [Epub ahead of print]
      Interferon-gamma inducible protein 16 (IFI16) is a member of the HIN-200 family and has been proposed as a pathogenic DNA sensor with the dual function of activating both the inflammasome pathway and the stimulator of interferon genes (STING) pathway. Here, our cryo-EM analysis revealed that the pyrin domain (PYD) of IFI16 self-oligomerizes into a filamentous structure. The filament structure of IFI16PYD is distinct from those of PYDs in other inflammasome-related proteins, including ASC, AIM2, and NLRP3. Specifically, the IFI16PYD filament can be described as a three-start, right-handed helix assembly as for the known PYD filaments, but with a helical rise of 17.4 Å instead of ∼14 Å and a helical twist of 43.7° instead of ∼55° and lacking the C3 symmetry, resulting in a smaller diameter. Moreover, IFI16 mutants with impaired filament formation exhibited a reduced ability to enhance STING activation compared with wildtype IFI16 in a cellular reporter assay.
    Keywords:  IFI16; STING; cryo-EM; inflammasome; pyrin domain
    DOI:  https://doi.org/10.1016/j.str.2026.01.011
  6. Proc Natl Acad Sci U S A. 2026 Feb 24. 123(8): e2518759123
      The NLRP3 inflammasome is crucial for host defense against pathogen invasion and is implicated in various inflammatory disorders. The pathogenic association and the involved mechanism between the NLRP3 inflammasome and inflammatory diseases have garnered significant attention. Here, we demonstrate that Crohn's disease-associated SNP RNF123-R854H aggravates colitis in vivo through the NLRP3-dependent pathway. Deficiency of RNF123 also aggravates dextran sodium sulfate-induced colitis, LPS (lipopolysaccharide)-induced endotoxemia, and Alum-induced peritonitis and enhances host defense against bacterial infection via the NLRP3-dependent pathway in vivo and promotes the NLRP3 inflammasome activation in cells. We establish RNF123 as a regulator for the NLRP3 inflammasome, highlighting its implication in the NLRP3 inflammasome-driven inflammatory diseases. Mechanistically, RNF123 catalyzes unanchored K63-linked ubiquitination of NEK7, thereby preventing NEK7-mediated dissociation of the inactive cage-like NLRP3 aggregates and the subsequent NLRP3 inflammasome assembly. Additionally, we prove that K63-linked polyubiquitin chains can be specifically captured by NEK7 in vitro and inhibit the NEK7-licensed NLRP3 inflammasome assembly. We propose that NEK7-captured unanchored K63-polyubiquitin chains serve as a key determinant for the NLRP3 inflammasome activation, acting as a molecular brake to limit the excessive NLRP3 inflammasome activation and preserve immune homeostasis. Our work yields mechanistic insights into the NLRP3 inflammasome regulation and its pathogenic link to inflammatory disease.
    Keywords:  NEK7; NLRP3; RNF123; inflammatory disease; unanchored K63-linked polyubiquitin chains
    DOI:  https://doi.org/10.1073/pnas.2518759123
  7. J Inflamm (Lond). 2026 Feb 18.
      Several cellular pathways lead to the formation of neutrophil extracellular traps (NETs), a form of cell death (NETosis), distinct from apoptotic and necrotic cell death. Surprisingly, there remains a paucity of methods enabling efficient quantification of NETosis and associated pathways. Here, we describe the development of a simple, sensitive, reliable and flexible flow cytometry assay allowing efficient detection and quantification of NETosis. For the core assay, isolated primary human neutrophils were incubated with stimulants e.g. PMA/ionomycin with or without inhibitors prior to fixing. The fixed cells were then blocked and subsequently incubated in anti-DNA/Histone 1 and anti-histone H2A antibodies for dual detection of Histone 1 and Histone H2A. Cells with were H1-DNA/H2A double fluorescent were deemed NETotic. Imaging flow cytometry was used to validate the accuracy of NETosis detection/quantification. Several key pathways of NETosis were confirmed via the use of established NET-inducers in accordance with existing established methodologies. Importantly, our novel flow cytometry-based NETosis detection assay could efficiently discriminate NETosis from established neutrophil activation, as well as apoptotic and necrotic cell death. We believe our methodology will complement existing NETosis methodologies whilst concomitantly reducing human error, subjectivity and, indeed the false positivity (attained from neutrophil activation and other cell death processes) inherent in existing methodologies. Furthermore, the simplicity and flexibility of our methodology permit additional markers and pathways of NETosis to be investigated, highlighting it as an integral research tool for both general NETosis research and the pursuit to better understand the pathogenesis of NETosis-associated diseases.
    Keywords:  Calcium ionophore; Flow cytometry; Imaging flow cytometry; NADPH oxidase; NET; NET detection; NET quantification; NETosis; Neutrophil extracellular traps
    DOI:  https://doi.org/10.1186/s12950-026-00490-0
  8. Cell Rep. 2026 Feb 18. pii: S2211-1247(26)00079-3. [Epub ahead of print]45(3): 117001
      Tissue repair requires inflammation resolution, but the molecular mechanisms involved in vivo are not fully understood. Here, we show that glutamine metabolism suppresses neutrophil recruitment to abrogate inflammation and drive skin wound repair. Integrated metabolomic and transcriptional profiling identified glutamine metabolism as enriched in macrophages during resolution. Dietary depletion studies and conditional deletion of glutaminase, the enzyme essential for glutamine metabolism, in mouse myeloid cells revealed that macrophages suppress neutrophil recruitment genes during tissue resolution to promote repair. We also found that these genes are upregulated in macrophages in patients with diabetes. Mechanistically, our data reveal that glutamine metabolism in macrophages induces suppressive chromatin remodeling of neutrophil recruitment genes, including Ccl ligands, during resolution of inflammation. These findings highlight the ability of specific metabolites to control cellular communication during tissue repair, with glutamine specifically to suppress neutrophil recruitment to advance inflammation resolution.
    Keywords:  CP: immunology; CP: metabolism; glutamine; immunology; inflammation; macrophages; metabolism; neutrophils; resolution; skin; tissue repair; wound healing
    DOI:  https://doi.org/10.1016/j.celrep.2026.117001
  9. J Leukoc Biol. 2026 Feb 09. pii: qiag008. [Epub ahead of print]118(2):
      Neutrophils are key first responders to both infectious and noninfectious stress, playing a pivotal role in maintaining homeostasis through tightly regulated activation states and the release of inflammatory mediators. The Nod-like receptor family pyrin domain containing 3 (NLRP3) inflammasome is a key regulator of inflammation and has been extensively studied in monocytes and macrophages. However, recent research has shifted focus to the NLRP3 inflammasome in neutrophils and has highlighted its role in neutrophil activation and the production of inflammatory mediators. For example, neutrophils express a functional NLRP3 inflammasome with activation dynamics similar to those observed in monocytes. Canonical inflammasome activation is triggered by stimuli such as lipopolysaccharide and adenosine triphosphate via P2X7 receptor signaling, leading to interleukin-1β release. However, neutrophils also exhibit distinct characteristics, including the involvement of proteases other than caspase-1, differential regulation by kinases such as Bruton's tyrosine kinase, and the release of neutrophil extracellular traps and neutrophil proteases upon NLRP3. Moreover, apoptosis-associated speck-like protein containing a CARD (ASC)0-independent Nod-like receptor family pyrin domain containing 3 functions have been described. A picture emerges in which the interplay between NLRP3 activation and unique neutrophil functions is critical in various pathological contexts, yet the mechanisms and downstream effects remain underexplored. With a particular emphasis on the human system, this review aims to summarize current knowledge of NLRP3 inflammasome function in neutrophils. Given the essential need to consider the role of neutrophils in NLRP3-targeting approaches, it also seeks to highlight critical open questions that warrant further research.
    Keywords:  NLRP3; inflammasome; neutrophils
    DOI:  https://doi.org/10.1093/jleuko/qiag008
  10. Curr Opin Immunol. 2026 Feb 13. pii: S0952-7915(26)00017-8. [Epub ahead of print]99 102740
      Regulated cell death, including apoptosis, necroptosis, and pyroptosis, as well as cell death arising from disrupted cellular homeostasis, such as ferroptosis and dysregulated autophagy, is implicated in cancer, autoimmunity, and transplantation biology. Graft-versus-host disease (GVHD), a major cause of morbidity and mortality after allogeneic hematopoietic cell transplantation, is driven by donor T-cell recognition of host alloantigens and effector response, leading to extensive tissue injury. Apoptotic pathways have been well studied in GVHD, and targeting apoptosis has shown therapeutic benefit. Emerging forms of cell death are now recognized to regulate immune and non-immune cells, providing new mechanistic insights into GVHD. Manipulating these pathways offers opportunities to alleviate GVHD through eliminating pathogenic alloreactive T cells or enhancing the survival of protective cell populations, such as regulatory T cells, innate lymphoid cells, and intestinal epithelial cells. We summarize recent advances on how diverse cell death pathways shape GVHD pathogenesis and their therapeutic implications.
    DOI:  https://doi.org/10.1016/j.coi.2026.102740
  11. ACS Chem Biol. 2026 Feb 18.
      The Bcl-2 family of proteins governs mitochondrial outer membrane (MOM) permeabilization, a critical step in apoptosis that is dysfunctional in many cancers. Although cellular studies have long implicated direct interactions between the pore-forming apoptotic Bax protein and its opponent, the antiapoptotic Bcl-2 protein in apoptosis regulation, the underlying basic principles behind this control remained unresolved. To provide in-depth insight, we carried out a systematic biophysical study in which we utilized neutron reflectometry (NR) and ATR-FTIR to elucidate the molecular communication between those proteins in and around the mitochondrial membrane environment. The spatial and temporal changes across model MOM surfaces were resolved during the interaction of Bax with Bcl-2. The NR-derived membrane surface Bax distributions suggested that Bcl-2 mediated Bax sequestration through both Bcl-2/Bax heterodimerization and Bax/Bax oligomerization. Kinetic analysis revealed a two-step process: rapid formation of Bcl-2/Bax heterodimers, followed by slower Bax oligomerization on these complexes. Importantly, this sequestration mechanism was also observed in the presence of cardiolipin, a lipid known to promote the formation of an apoptotic pore by Bax in the absence of Bcl-2. These findings suggest a fundamental mechanism by which cancer cells may evade apoptosis by exploiting Bcl-2's ability to neutralize Bax through structural entrapment, even if excess Bax is present, either in response to treatment or natural death signals.
    DOI:  https://doi.org/10.1021/acschembio.5c00913
  12. J Allergy Clin Immunol. 2026 Feb 17. pii: S0091-6749(26)00087-4. [Epub ahead of print]
       BACKGROUND: Type 1 mediated chronic inflammatory skin diseases (ISD) affect skin, hair, nails and mucosa and dramatically impact patient's quality of life. The two most prominent examples are lichen planus (LP) and cutaneous lupus erythematosus (CLE). Various cell death pathways are activated in both diseases, including apoptosis and necroptosis. RIPK1 is a key regulator of programmed cell death and thus represents a potential new target for the treatment of these diseases.
    OBJECTIVE: To determine the impact of RIPK1 on cell death and inflammation in LP and CLE.
    METHODS: RNA-sequencing of ISD (n=179). Assessing cell death, hypothermia and inflammatory markers affected by Eclitasertib, a novel RIPK1 inhibitor, in human cells, murine TNF-α induced systemic inflammatory response syndrome (SIRS) model, reconstructed human epidermis and ex vivo skin biopsy culture.
    RESULTS: Markers of apoptosis (Caspase 8) and necroptosis (RIPK3, MLKL) are upregulated in LP and CLE. Eclitasertib restored body temperature when orally administered 15 minutes after TNF-α injection in murine SIRS model. Further, RIPK1 inhibition prevented keratinocyte cell death, normalized epidermal architecture and decreased the release of IL-1α, IL-1β, TNF-α, and CCL20 in reconstructed human epidermis upon stimulation with LP/CLE T cell supernatant. Ex vivo culture of LP and CLE biopsies with Eclitasertib reduced expression of disease specific genes and downregulated pathways associated to inflammation.
    CONCLUSION: Inhibition of RIPK1 targets two major pathogenic events in LP and CLE: epidermal cell death and type 1 mediated skin inflammation.
    Keywords:  Eclitasertib; Lichen planus; RIPK1; cell death; cutaneous lupus erythematosus; necroptosis; targeted therapy
    DOI:  https://doi.org/10.1016/j.jaci.2026.02.006
  13. EMBO Mol Med. 2026 Feb 17.
      NLRP3 inflammasome, the archetypical molecular driver of inflammation, plays crucial roles in host defense and maintaining cellular homeostasis. Demethylation of histone 3 lysine 9 trimethylation (H3K9me3, the repressive mark for euchromatic genes) is essential for activating gene transcription. However, whether H3K9 demethylation is required for the induction of proinflammatory cytokines remains largely unknown. Here, we show that histone demethylase lysine-specific demethylase 4B (KDM4B) mediates H3K9me3 demethylation at the Nlrp3 promoter to induce NLRP3 expression, thereby selectively enhancing NLRP3 inflammasome activation without affecting NF-κB activation. Concordantly, both Kdm4b deficiency and the selective KDM4 inhibitor ML324 inhibit NLRP3 inflammasome activation and ameliorate NLRP3-dependent inflammatory diseases in vivo. Furthermore, high glucose level upregulates KDM4B, promoting NLRP3 inflammasome activation and IL-1β secretion, thus aggravating aberrant inflammation during viral infections. Our findings reveal the role of H3K9me3 demethylation in initiating inflammation, identify KDM4B as an epigenetic accelerator of NLRP3, and propose that modulating H3K9me3 could represent a targeted anti-inflammatory strategy.
    Keywords:  Epigenetic Modification; H3K9me3; KDM4B; NLRP3; NLRP3 Inflammasome
    DOI:  https://doi.org/10.1038/s44321-026-00373-0
  14. Dev Cell. 2026 Feb 17. pii: S1534-5807(26)00037-7. [Epub ahead of print]
      Ferroptosis is a lipid peroxide-dependent form of cell death that occurs in degenerative conditions and may be leveraged for cancer therapy. Although numerous regulators are known to control its cell-autonomous execution, ferroptosis also has a collective property that involves propagation between cells, and this regulation has remained more obscure. Different modes of ferroptosis induction involving inhibition of the anti-ferroptotic enzyme GPX4 or depletion of glutathione can impact the collective death response differently, but the mechanisms underlying "single-cell" versus "propagative" ferroptosis are not well understood. Here, we discover significant lysosome rupture occurring during propagative ferroptosis and identify glutathione depletion as sufficient to convert GPX4 inhibition from an individual-cell response to a collective response. We find that induction of single-cell ferroptosis involves heterogeneous death profiles, with necrosis and apoptosis occurring in parallel within cell populations. These findings identify factors that control propagation and underscore lysosomes as critical to the execution of ferroptosis.
    Keywords:  GPX4; TFEB; apoptosis; cathepsin; ferroptosis; iron; lipid peroxidation; lysosome; necrosis; propagation
    DOI:  https://doi.org/10.1016/j.devcel.2026.01.014
  15. Cell. 2026 Feb 19. pii: S0092-8674(26)00056-5. [Epub ahead of print]
      Ferroptosis is a tumor-suppressive mechanism with therapeutic potential. While canonical ferroptosis is usually triggered by inducers, such as erastin and RSL-3, or by glutathione peroxidase (GPX)4 loss, how ferroptosis occurs naturally in vivo without these triggers has been unclear. Building on evidence that p53 can mediate ferroptosis as a natural tumor-suppressive pathway, we describe a noncanonical, in vivo ferroptosis driven by reactive oxygen species (ROS)-induced phosphatidic acid (PA) peroxidation that proceeds without inducers. We identify GPX1 as a key regulator of this ROS-induced ferroptosis by modulating PA peroxidation. GPX1's effects depend on OSBPL8, an endoplasmic reticulum (ER)-membrane-associated oxysterol-binding protein. ROS-driven lipid peroxidation accumulates at the ER before plasma membrane rupture and cell death; GPX1 is recruited to the ER via OSBPL8 and directly reduces oxidized PA. OSBPL8 and GPX1 are overexpressed in cancers; knockdown of either promotes ROS-induced ferroptosis and suppresses tumor growth. Our data link the GPX1-OSBPL8 axis to in vivo ferroptosis and tumor suppression.
    Keywords:  GPX1; GPX4; OSBPL8; ROS; cancer; ferroptosis; lipid peroxidation; p53; phosphatidic acid; phosphatidylethanolamine; tumor suppression
    DOI:  https://doi.org/10.1016/j.cell.2026.01.009