bims-cediti Biomed News
on Cell death in innate immunity, inflammation, and tissue repair
Issue of 2026–02–08
twelve papers selected by
Kateryna Shkarina, Universität Bonn



  1. Cell Metab. 2026 Feb 03. pii: S1550-4131(25)00550-9. [Epub ahead of print]38(2): 260-262
      In a recent issue of Cell, Wang et al. identify "mitoxyperilysis," a previously unknown lytic cell death pathway where combined innate immune and metabolic stress triggers prolonged mitochondria-plasma membrane contact, causing local oxidative damage and membrane rupture. This mTORC2-regulated process identifies a therapeutic axis for inflammatory diseases and cancer.
    DOI:  https://doi.org/10.1016/j.cmet.2025.12.019
  2. bioRxiv. 2026 Jan 25. pii: 2026.01.23.701331. [Epub ahead of print]
      Innate immune recognition of double-stranded RNA (dsRNA) by germline-encoded receptors initiates antiviral defenses, including type I interferon (IFN) production. The inflammasome-forming sensor NLRP1 binds and is activated by dsRNA in a mitogen-activated protein kinase (MAPK) p38-dependent manner. How dsRNA initiates these events to induce NLRP1 inflammasome activation is unclear. Here we demonstrate that both exogenous and cellular dsRNA triggers NLRP1 inflammasome activation downstream of RIG-I/MDA5-MAVS and/or TLR3-TRIF signaling but is independent of type I IFN. In immortalized and primary human keratinocytes, we find that NLRP1 inflammasome activation by dsRNA, including during viral infection, requires the MAPK kinase kinase TAK1. Mechanistically, TAK1-dependent phosphorylation of the NLRP1 N-terminal disordered region is necessary and sufficient for inflammasome activation. Collectively, we reveal TAK1 as a novel activator of the NLRP1 inflammasome, functioning as a critical signaling hub linking NLRP1 to inflammatory responses in the context of viral infection and autoimmunity.
    DOI:  https://doi.org/10.64898/2026.01.23.701331
  3. bioRxiv. 2026 Jan 20. pii: 2026.01.16.699988. [Epub ahead of print]
      The NOD-, LRR-, and pyrin domain-containing protein 3 (NLRP3) inflammasome is a multiprotein signaling complex that triggers pyroptotic cell death and interleukin (IL)-1 family cytokine release during infection and cell injury. Its assembly is driven by the adaptor protein, apoptosis-associated speck-like protein containing a CARD (ASC), whose filamentation forms a supramolecular speck upon NLRP3 activation to amplify inflammasome signaling. While the NLRP3 inflammasome is well appreciated as a sensor of environmental danger and damage, little is known about how homeostatic environmental factors like dietary metabolites regulate its activity. Here, we find that environmental availability of the branched-chain amino acids (BCAAs), leucine, isoleucine, and valine, controls NLRP3 inflammasome assembly. While ASC is typically viewed as a constitutively expressed, unregulated inflammasome component, we find that Toll-like receptor 4 (TLR4) activation triggers localization of ASC mRNA to the perinuclear space. Moreover, our data demonstrate that ASC undergoes TLR4-driven translational bursting from polyribosomes during inflammasome priming. This translational engagement is dependent on BCAA availability and mechanistic target of rapamycin (mTOR) activity, which regulate the kinetics of inflammasome assembly. In contrast, the translation of NLRP3 and caspase-1 is largely insensitive to these inputs. Furthermore, we find that BCAAs regulate NLRP3 inflammasome activation in both mouse and human macrophages, in the context of bacterial infection, and during lipopolysaccharide (LPS)-induced sepsis in vivo . Altogether, this work unveils a novel inflammasome priming event governed by the amino acid environment. These findings further highlight how the activity of proteins maintained in equilibrium like ASC can be dynamically regulated through rapid changes in mRNA translation.
    DOI:  https://doi.org/10.64898/2026.01.16.699988
  4. Cell Chem Biol. 2026 Feb 04. pii: S2451-9456(26)00023-1. [Epub ahead of print]
      Bacteria-infected macrophages undergo pyroptosis to release inflammatory cytokines, which contributes to host defense. It has been known that activated macrophages involve metabolic reprogramming. However, the metabolic changes and the role of metabolites in pyroptotic macrophages are not fully understood. Here, we revealed that aerobic glycolysis product, lactate, could promote NLRP3 inflammasome activation induced pyroptosis. We found that endogenous lactate facilitates ASC recruitment to NLRP3 cores on the organelle membrane, thus inducing NLRP3 inflammasome complex formation. Mechanistically, we identified NLRP3 as a target protein modified by lactate, which is lactylated by AARS2. We confirmed lactylated sites on NLRP3 by LC-MS/MS analysis and verified that lactylation at K24 and K565 of NLRP3 facilitates inflammasome activation in macrophage. In vivo, inhibition of lactate production alleviates inflammatory responses in polymicrobial sepsis. Overall, our results indicate the role of lactate in regulating macrophage pyroptosis and the crosstalk between metabolism and innate immunity.
    Keywords:  NLRP3 inflammasome; lactylation; pyroptosis
    DOI:  https://doi.org/10.1016/j.chembiol.2026.01.003
  5. Res Sq. 2026 Jan 12. pii: rs.3.rs-8349343. [Epub ahead of print]
      Senescent cells influence their surroundings through the senescence-associated secretory phenotype (SASP), an assortment of secreted molecules and macromolecular complexes. Among SASP's intracellular drivers are cytoplasmic chromatin fragments (CCFs), nuclear-derived DNA that activates the pro-inflammatory cGAS/STING pathway. While autophagy contributes to CCFs degradation, the full repertoire of CCF fates and signaling functions remains unclear. Here, we show that senescent cells release CCF components, ɣH2AX and double-stranded DNA (dsDNA), into the extracellular space via an ESCRT-independent multivesicular body pathway. Secreted CCF components localize to extracellular particles exhibiting an unusual "popcorn"-like morphology, distinct from canonical small extracellular vesicles. Notably, inhibition of autophagy enhances secretion of CCF components and particles, suggesting an inverse relationship between intracellular clearance and extracellular release. A fraction of CCF-containing extracellular particles activates cGAS-STING signaling in non-senescent proliferating cells and is enriched in the circulation of aged mice, pointing to a previously unrecognized mode of extracellular signaling by senescent cells.
    DOI:  https://doi.org/10.21203/rs.3.rs-8349343/v1
  6. Cell Death Differ. 2026 Feb 03.
      The pro-inflammatory programmed cell death pathway, necroptosis, relies on phosphorylation of the terminal effector, MLKL, by RIPK3. RIPK3-deficient mice or those harboring the kinase-inactivating mutation, RIPK3K51A, are ostensibly normal in the absence of challenge, indicating that RIPK3 and its kinase activity are dispensable for development. However, another kinase-inactivating mutation, RIPK3D161N, results in embryonic lethality in mice due to widespread apoptosis. As a result, the RIPK3D161N mutation is thought to confer a toxic gain-of-function. Here, to further explore the impacts of RIPK3 inactivation, we compared the stability and cellular interactions of RIPK3D161N and RIPK3K51A to a third previously-uncharacterized kinase-dead variant, RIPK3D143N. We show that RIPK3K51A was unstable and did not associate with RIPK1, RIPK3D161N was unstable but interacted with RIPK1, whereas RIPK3D143N was stable and bound RIPK1 in a manner comparable to wild-type RIPK3. Thus, all three variants scaffold differently, suggesting that the assembly of cell death machinery by RIPK3 is finely tuned, not just by its kinase activity, but also by the conformation of its kinase domain. Physiologically, Ripk3D143N/D143N mice exhibited a partially penetrant lethality in utero. However, once born, Ripk3D143N/D143N mice were fertile and phenotypically indistinguishable from wild-type mice in the absence of challenge. Full blockade of necroptotic signaling was shown in cells from Ripk3D143N/D143N mice, with the RIPK3D143N mutation also protecting Casp8-/- mice from lethal necroptosis during embryogenesis and preventing necroptotic ileitis in mice that lacked intestinal epithelial caspase-8 expression. Our studies support the idea that RIPK3 is a nexus between apoptotic and necroptotic signaling, and highlight the importance of considering kinase domain conformation in RIPK3 inhibitor development.
    DOI:  https://doi.org/10.1038/s41418-026-01677-x
  7. Biochem Soc Trans. 2026 Feb 25. pii: BST20250100. [Epub ahead of print]54(2):
      Poxviruses are double-stranded DNA viruses that infect a wide range of animals. Their large genomes encode for over 200 proteins and many of these help establish infection by inhibiting cell death or interfering with host antiviral signalling pathways. This includes the poxviral B cell lymphoma-2 (Bcl-2) proteins, which are found in most of the Chordopoxvirinae (vertebrate-infecting poxviruses), with individual viruses possessing multiple Bcl-2 proteins. These proteins are so named for the fact that they adopt an alpha helical bundle with structural similarity to cellular anti-apoptotic Bcl-2 proteins, despite lacking obvious primary amino acid sequence identity with these proteins. Not surprisingly, initial studies found that some poxviral Bcl-2 proteins inhibit apoptosis; however, it was soon clear that these proteins have additional functions. This brief review highlights some of these other activities that have either been more recently identified or for which additional mechanistic insight has been acquired. This includes the role of poxviral Bcl-2 proteins in modulating nucleotide-binding domain, leucine-rich repeat and pyrin domain-containing protein (NLRP) inflammasome activation and inhibiting antiviral signalling regulated by the interferon regulatory factor 3 and 7 (IRF3/7) transcription factors. Finally, we discuss how poxviral Bcl-2 proteins interfere with cellular antiviral TRIM family E3 ubiquitin-ligases to promote virus replication.
    Keywords:  Bcl-2 proteins; TRIM proteins; host-pathogen interactions; inflammasome; interferon regulatory factors; poxviruses
    DOI:  https://doi.org/10.1042/BST20250100
  8. Immunol Lett. 2026 Jan 28. pii: S0165-2478(26)00018-0. [Epub ahead of print] 107145
      Innate immunity has long been viewed as a defense system that evolved to detect and eliminate invading microbes. However, its functions extend beyond pathogen control to the continuous surveillance of cellular integrity. Cellular homeostasis relies on repair mechanisms that preserve genome stability, proteostasis, lipid balance, and organelle quality. When these systems fail, endogenous molecules such as nucleic acids, lipids, protein aggregates, and metabolites become mislocalized or modified and act as damage-associated molecular patterns (DAMPs). These signals mark sites of failed repair and activate innate sensors, sustaining inflammation even in the absence of infection. In this minireview, we outline the major classes of DAMPs and show how their accumulation reflects defects in specific repair pathways. We propose that innate immunity and cellular repair are fundamentally interconnected. When repair is intact, inflammation is transient and resolves. When repair fails, inflammation becomes chronic and drives disease.
    Keywords:  Cellular repair pathways; DAMPs; Homeostasis; Inflammation; Innate immunity
    DOI:  https://doi.org/10.1016/j.imlet.2026.107145
  9. bioRxiv. 2026 Jan 22. pii: 2026.01.19.699752. [Epub ahead of print]
      Myelin is an insulating, multi-layered membrane that supports axonal integrity and neural communication. Different stressors impair myelinating oligodendrocytes, leading to demyelination, inflammation, and neurodegeneration. The intracellular processes underlying oligodendrocyte degeneration and death are unclear. Here, using optically targeted DNA damage that causes single-cell demyelination, we reveal that injured mature oligodendrocytes lose mitochondria within days and persist without them for weeks to months before cell death. This differs from other oligodendrocyte lineage cells, which exhibit acute mitochondrial changes followed by rapid cell death. Conditional deletion of the mitochondrial-related gene, Fis1 , in mature oligodendrocytes, similarly causes acute loss of mitochondria and prolonged cell death. The unique cell death is characterized by nuclear changes, intracellular stress, and markers of disease-associated oligodendrocytes. Thus, mitochondrial loss may be an early marker of oligodendrocyte pathology, and mitochondrial quality control is required for oligodendrocyte and myelin homeostasis.
    DOI:  https://doi.org/10.64898/2026.01.19.699752
  10. Immunity. 2026 Feb 02. pii: S1074-7613(26)00036-1. [Epub ahead of print]
      Genome-wide association studies strongly implicate neuroinflammation in late-onset Alzheimer's disease (LOAD). Genetic risk loci for LOAD are enriched for genes expressed in microglia, but the relationship among microglial LOAD risk genes has been unclear. We found that the N-terminal SH2 domain of INPP5D, an important LOAD risk gene, directly interacted with the cell death regulator RIPK1 at p-Y383 to suppress RIPK1 kinase activation. Microglial INPP5D deficiency cell-autonomously promoted RIPK1-mediated transcriptional induction of diverse LOAD risk genes, proinflammatory cytokines, complements, and ROS mediators, as well as proinflammatory signaling mediators such as Toll-like receptors (TLRs), MyD88, Nlrp3, gasdermin D, and Zbp1. RIPK1-regulated microglial transcriptomic signatures were found in microglial subtypes implicated in human Alzheimer's disease (AD) pathogenesis. Furthermore, microglial INPP5D deficiency promoted aging-dependent RIPK1-mediated development of neuronal TDP-43 pathology, neuronal loss, and motor dysfunction in a non-cell-autonomous manner. Our data suggest that INPP5D functions as an intracellular rheostat in regulating RIPK1-mediated neuroinflammation for promoting aging-related neurodegenerative diseases, including LOAD and AD-amyotrophic lateral sclerosis comorbidity.
    Keywords:  ALS; INPP5D; LOAD; RIPK1; TDP-43 pathology; aging; amyotrophic lateral sclerosis; late-onset Alzheimer's disease; microglia; neuroinflammation; neuronal loss; pro-inflammatory mediators
    DOI:  https://doi.org/10.1016/j.immuni.2026.01.014
  11. bioRxiv. 2026 Jan 21. pii: 2026.01.20.700660. [Epub ahead of print]
      Developmental cell death is classically attributed to apoptosis, yet in mammalian retina, large numbers of developing astrocytes die non-apoptotically during a defined developmental window. Astrocyte death is important for patterning a cellular template that guides angiogenesis, but the underlying mechanism remains unknown. Here we show that healthy developing astrocytes initiate their own elimination by recruiting microglia via regulated exposure of the membrane lipid phosphatidylserine. Experimentally increasing phosphatidylserine exposure in astrocytes, but not neurons, accelerates their removal by microglia without changing how many astrocytes ultimately survive. This acceleration causes profound vascular defects resembling pathological features of retinopathy of prematurity. Genetic disruption of MFGE8, a phosphatidylserine-binding protein, suppresses microglia-mediated astrocyte killing and prevents vascular pathology despite continued phosphatidylserine exposure. This mechanism extends beyond the retina, because phosphatidylserine also initiates astrocyte death in developing cerebral cortex. Together, these findings identify phosphatidylserine exposure as a developmental signal that times microglia-mediated astrocyte elimination, with essential consequences for neurovascular development.
    DOI:  https://doi.org/10.64898/2026.01.20.700660
  12. Nature. 2026 Feb 04.
      Bacteria use diverse mechanisms to protect themselves against phages1-6. Many antiphage systems form large oligomeric complexes, but how oligomerization is regulated during phage infection remains mostly unknown7-12. Here we demonstrate that the bacterial immunity protein ring-activated zinc-finger RNase (RAZR) assembles into an active, 24-meric ring around the circumference of large ring structures formed by two unrelated phage proteins: a putative recombinase and a portal protein. Each multi-layered, megadalton-scale complex enables RAZR to cleave RNA nonspecifically to inhibit translation and restrict phage propagation. The recognition of unrelated phage proteins that form rings with similar diameters indicates that these proteins not only bind to RAZR but also enforce a geometry crucial to activation. The lack of large ring structures in the host probably prevents auto-immunity and RAZR activation before infection. The infection-triggered oligomerization of RAZR mirrors pathogen-induced oligomerization in eukaryotic innate immune complexes13, underscoring a common principle of immunity across biology.
    DOI:  https://doi.org/10.1038/s41586-025-10060-8