bims-cagime Biomed News
on Cancer, aging and metabolism
Issue of 2026–09–06
34 papers selected by
Kıvanç Görgülü, Technical University of Munich



  1. Cancer Discov. 2026 Sep 01. OF1-OF25
      Cancer cachexia is a devastating wasting syndrome with no approved therapies. In this study, we identify the tumor-derived glycoprotein ADAMTSL4 as a circulating factor associated with body weight loss in preclinical cachexia models and patients with colorectal and lung cancers. In mice, Adamtsl4 overexpression converted non-cachexia-inducing tumors into cachexia-inducing tumors, whereas its deletion in cachexia-inducing tumors spared fat and muscle, blunted muscle atrophy signatures, and reduced cachexia severity. ADAMTSL4 engages the latency-associated peptide (LAP) of TGFβ1, promoting local activation of TGFβ1 at muscle cell membranes. Genetic blockade of proTGFβ1 or pharmacologic inhibition of TGFβ signaling reduced ADAMTSL4-dependent wasting in adipocytes and muscle cells. Suppression of tumor-derived ADAMTSL4 attenuated skeletal muscle fibrosis in mice. Together, the association between increased circulating ADAMTSL4 levels and TGFβ-driven muscle atrophy and fibrosis gene signatures in patients with cachectic cancer identifies ADAMTSL4 as an upstream regulator of TGFβ1 and a potential therapeutic target in cancer cachexia.
    SIGNIFICANCE: Cancer cachexia lacks effective therapies and remains a major cause of cancer-related morbidity and mortality. We identify tumor-derived ADAMTSL4 as an upstream regulator of latent TGFβ activation via LAP engagement that promotes multiorgan wasting and fibrosis-related remodeling. Targeting ADAMTSL4 may provide a selective therapeutic strategy without systemic TGFβ pathway blockade.
    DOI:  https://doi.org/10.1158/2159-8290.CD-26-0045
  2. Nat Genet. 2026 Sep 02.
      Tumor progression is driven by dynamic interactions between cancer cells and their surrounding microenvironment. Here we integrate high-resolution spatial transcriptomics and evolving lineage-tracing technologies to elucidate how tumor expansion, plasticity and metastasis co-evolve with microenvironmental remodeling in a Kras;Trp53-driven mouse model of lung adenocarcinoma. We find that subclonal expansion contributes to a hypoxic, immunosuppressive and fibrotic microenvironment that is associated with the emergence of prometastatic cancer cell states. We use tumor phylogeography to delineate intercellular interactions that are rewired in the expanding tumor niche and use co-culture systems to dissect how intercellular interactions and hypoxia influence cancer cell state. Furthermore, we find that metastases arise from spatially confined primary tumor subclones and remodel the distant metastatic niche into a fibrotic, collagen-rich microenvironment. Together, we present a comprehensive dataset integrating spatial assays and lineage tracing to elucidate how sequential changes in cancer cell state and microenvironmental structures cooperate to promote tumor progression.
    DOI:  https://doi.org/10.1038/s41588-026-02739-z
  3. Autophagy. 2026 Aug 30.
      Ferroptosis is an iron-dependent form of regulated cell death driven by lipid peroxidation; however, how selective autophagy regulates ferroptotic sensitivity remains incompletely understood. Here, we identify RAB8A as a selective autophagic substrate and negative regulator of ferroptosis. Quantitative proteomic analyses reveal that ferroptotic stress induces ATG5- and ATG7-dependent degradation of RAB8A. Mechanistically, ferroptotic stimuli induce RNF126-dependent polyubiquitination of RAB8A and subsequent SQSTM1-mediated autophagic degradation. Functionally, loss of RAB8A sensitizes cancer cells to ferroptosis, whereas expression of the degradation-resistant active mutant RAB8AQ67L suppresses ferroptotic cell death. RAB8A interacts with TFRC and facilitates stress-induced redistribution of TFRC from the plasma membrane toward endolysosomal compartments. RAB8A deficiency impairs TFRC clearance, enhances transferrin-dependent iron uptake, and increases intracellular Fe2+ accumulation and lipid peroxidation. In fibrosarcoma and pancreatic cancer xenograft models, RAB8A depletion enhances the antitumor efficacy of ferroptosis-inducing therapy. Clinically, RAB8A is upregulated and associated with poor prognosis and ferroptosis resistance in pancreatic cancer. Collectively, these findings establish an autophagy-RAB8A-TFRC axis that regulates ferroptotic sensitivity.
    Keywords:  Iron metabolism; SQSTM1; lysosomal degradation; membrane trafficking; selective autophagy
    DOI:  https://doi.org/10.1080/15548627.2026.2726089
  4. Adv Sci (Weinh). 2026 Sep 01. e77360
      Biomolecular phase separation has emerged as a key organizing principle in macroautophagy (hereafter autophagy). In mammalian cells, phase-separated condensates not only serve as substrates for selective degradation, but also act as dynamic platforms for cargo recognition, signaling integration, and autophagosome assembly. The material state of these condensates is an important determinant of autophagic fate. Condensates exist along a continuum ranging from liquid-like droplets to gel-like and solid assemblies, and their progressive maturation can alter accessibility to autophagic machinery. Scaffold proteins and selective autophagy receptors further organize these assemblies into degradation-competent mesoscale reaction fields that couple cargo recognition with phagophore formation. Dysregulation of this phase separation-autophagy axis is increasingly implicated in neurodegeneration, cancer, aging, and stress-associated degenerative disease. Here, we propose a multiscale framework in which molecular accessibility, mesoscale organization, and condensate state transitions collectively shape autophagic outcome, providing a conceptual basis for predictive models and therapeutic strategies aimed at restoring condensate degradability.
    Keywords:  autophagy; condensate; disease; phase separation; receptor
    DOI:  https://doi.org/10.1002/advs.77360
  5. Cancer Res. 2026 Sep 04.
      Chemotherapy remains a cornerstone treatment for pancreatic ductal adenocarcinoma (PDAC), yet it paradoxically promotes metastatic recurrence. Elucidation of the underlying mechanisms mediating chemotherapy-induced metastasis could help identify improved combination treatment strategies. Here, we used a dormancy-tracking system to show that chemotherapy awakens dormant disseminated tumor cells (DTCs) in the liver by inducing hepatocyte senescence and subsequent neutrophil extracellular trap (NET) formation. In human and mouse cohorts, adjuvant and neoadjuvant chemotherapy triggered hepatocyte senescence, leading to TGF-β secretion and SMAD-dependent NETosis. NET-derived DNA engaged the transmembrane receptor CCDC25 on dormant DTCs, activating PI3K-AKT signaling and reprogramming DTCs toward a lipid-laden, proliferative phenotype. Genetic or pharmacologic disruption of NET formation, TGF-β signaling, or CCDC25 function effectively suppressed DTC reactivation and hepatic metastasis without compromising chemotherapy efficacy. Clinically, elevated serum NET-DNA levels correlated with hepatocyte senescence, DTC proliferation, and poor survival in PDAC and other solid tumors. Taken together, these findings unveil a senescence-NET-CCDC25 axis that links chemotherapy-induced tissue damage to metastatic relapse, providing a mechanistic basis for adjuvant and neoadjuvant strategies targeting NETosis and CCDC25 to prevent recurrence in PDAC.
    DOI:  https://doi.org/10.1158/0008-5472.CAN-26-0151
  6. Cell. 2026 Sep 03. pii: S0092-8674(26)00869-X. [Epub ahead of print]189(18): 5482-5484
      Iron abundance alone does not determine ferroptosis sensitivity. In this issue of Cell, Sharma and colleagues identify polyamines as endogenous metabolic buffers that reduce the chemical accessibility of labile iron, revealing an unexpected function for one of the cell's most abundant metabolite classes while raising new questions about the organization of intracellular iron metabolism.
    DOI:  https://doi.org/10.1016/j.cell.2026.07.037
  7. Trends Neurosci. 2026 Sep 01. pii: S0166-2236(26)00162-1. [Epub ahead of print]
      Cancer-associated cachexia (CAC) is a progressive, multiorgan wasting syndrome that critically limits treatment response and survival. In CAC, the nervous system senses, amplifies, and coordinates responses to a broad range of tumor-induced perturbations, including both direct tumor-derived factors and the resulting systemic disturbances in inflammation, metabolism, and immunity. By dysregulating central neural circuits and remodeling peripheral innervation, tumor-hijacked neural coordination drives both anorexia and multiorgan wasting, forming a self-reinforcing cachexia loop. Additionally, treatment-associated neurotoxicity further augments dysfunction across the central and peripheral nervous systems. In this review, we synthesize evidence from patient studies and animal models to examine how tumors co-opt the nervous system to systemically organize cachexia, thereby providing a pathophysiological framework for studying early disease detection, biomarker development, and mechanism-based intervention for CAC.
    Keywords:  brain–body interactions; cancer neuroscience; interorgan communication; neuroendocrine axis; systemic disease
    DOI:  https://doi.org/10.1016/j.tins.2026.08.002
  8. Nature. 2026 Sep 02.
      
    Keywords:  Cancer; Drug discovery; Medical research
    DOI:  https://doi.org/10.1038/d41586-026-02745-5
  9. Nat Cell Biol. 2026 Sep 02.
      Interactions between epithelial cells and fibroblasts influence disease progression and treatment response in pancreatic ductal adenocarcinoma (PDAC). While the diversity of fibroblasts in PDAC is increasingly recognized, it remains unclear how these cells differ from fibroblasts found in pancreatic inflammation. Chronic pancreatitis is a stroma-rich inflammatory disease and a risk factor for PDAC, making it a useful setting to study how epithelial cells and fibroblasts change during disease. Here we compare fibroblast diversity and epithelial-stromal interactions in pancreatitis and PDAC using human samples, mouse models and mouse pancreatitis-derived epithelial organoids. We also developed pancreatitis and PDAC organoid co-cultures containing pancreatic stellate cells, fibroblasts and mesothelial cells. Combining in vitro and in vivo models better reflected human disease than mouse models alone. Overall, our findings reveal distinct epithelial and fibroblast features in pancreatitis and PDAC and provide models to identify disease-specific markers and therapeutic vulnerabilities.
    DOI:  https://doi.org/10.1038/s41556-026-02057-w
  10. J Vis Exp. 2026 Sep 03.
      Autophagy plays a complex role in pancreatic ductal adenocarcinoma (PDAC), contributing to tumor progression, stress adaptation, and therapy resistance. Accurate assessment of autophagosomal dynamics is therefore essential for studies of cancer biology. Among the available methods, immunoblotting of microtubule-associated protein light chain 3 (LC3) is widely used to monitor autophagosomal dynamics by distinguishing between the cytosolic (LC3-I) and lipidated, autophagosome-associated (LC3-II) forms. However, the low molecular weight of LC3 and the minimal difference in electrophoretic mobility between these isoforms present technical challenges that require careful optimization. Presented here is a reproducible protocol for the semi-quantitative analysis of LC3-II levels by Western blot in KPC-derived murine pancreatic cancer cells. The method incorporates optimized conditions for cell lysis, electrophoresis, protein transfer, and antibody-based detection to ensure reliable separation and detection of LC3 isoforms. In addition, a standardized workflow for densitometric analysis of LC3-II bands using Fiji (ImageJ) is provided. The sensitivity of the method is demonstrated through the detection of increased LC3-II levels under conditions of autophagy induction (gemcitabine treatment) and impaired autophagic flux (VMP1 knockdown). Critical technical parameters that influence data interpretation, including lysis buffer composition and antibody specificity, are also examined, together with common experimental pitfalls. Although LC3 immunoblotting alone is insufficient to fully define autophagic flux, when combined with complementary assays it provides a robust and accessible approach for monitoring autophagic activity. The protocol can be adapted to other experimental contexts, facilitating mechanistic studies of autophagy in cancer models.
    DOI:  https://doi.org/10.3791/71604
  11. Cell Mol Gastroenterol Hepatol. 2026 Sep 04. pii: S2352-345X(26)00150-5. [Epub ahead of print] 101872
       BACKGROUND AND AIMS: The tumor microenvironment drives many malignant features of pancreatic ductal adenocarcinoma (PDAC). The fibroblasts within pancreatic tumors promote tissue remodeling, immune suppression, and resistance to therapy. However, the interactions between stromal populations and pancreatic cancer cells are less understood in the liver, the most frequent site of PDAC metastasis.
    METHODS: To address this, we employ single cell transcriptomics to compare primary pancreatic vs. liver PDAC lesions. Using a ligand-receptor interaction tool, we assess upregulated pathways in liver PDAC.
    RESULTS: Here, we identify the expression of hepatocyte growth factor (HGF) in fibroblasts and its receptor MET in cancer cells are both markedly increased in the PDAC liver niche. Using functional assays, we validate that mitogenic MET signaling is activated in PDAC cells by liver-derived fibroblasts. Importantly, the inhibition of MET signaling leads to reduced tumor growth in immune competent mouse models.
    CONCLUSIONS: Collectively, our data demonstrates that liver stromal-epithelial crosstalk networks engage in signaling pathways distinct from primary pancreatic tumors, highlighting opportunities to develop new treatments for metastatic disease.
    Keywords:  Desmoplasia; HGF; MET; NRF2; Redox metabolism; Single cell transcriptomics
    DOI:  https://doi.org/10.1016/j.jcmgh.2026.101872
  12. Sci Adv. 2026 Sep 04. 12(36): eaeg3201
      The human Unc51-like kinase 1 (ULK1) autophagy-initiating complex consists of ULK1, FIP200, and the Hop/Rev7/Mad2 (HORMA) domain heterodimer ATG13:ATG101. Phosphatidylinositol 3-phosphate (PI3P) is essential to recruit ULK1 complex (ULK1C) to membranes for ULK1, but ULK1C subunits do not contain PI3P-binding domains. Here, we show that the ATG13:ATG101 dimer forms a complex with the PI3P-binding protein WD40 interacting with phosphoinositide protein 3 (WIPI3), as well as WIPI2. Bound to WIPI2 and WIPI3, ATG13:ATG101 inserts its Trp-Phe (WF) finger into the membrane. Molecular dynamics simulations show that WIPIs and the WF finger cooperatively stabilize the complex on membranes. Biochemical reconstitution and cell-based assays show that WIPI3:ATG13 engagement promotes ATG16L1 phosphorylation, autophagy, and mitophagy. A kinase domain (KD)-proximal Pro-Val-Pro (PVP) motif in the ULK1 intrinsically disordered region docks onto the ATG13:ATG101 HORMA dimer brings the ULK1 KD close to the membrane. The PVP motif is essential for in vitro ULK1 phosphorylation of ATG16L1 and important for autophagy and mitophagy. These data establish a stepwise pathway for recruitment of the ULK1 KD to the vicinity of the membrane surface.
    DOI:  https://doi.org/10.1126/sciadv.aeg3201
  13. Cancer Metastasis Rev. 2026 Sep 02. pii: 65. [Epub ahead of print]45(3):
      The seed and soil hypothesis has long explained organotropic metastasis through biochemical compatibility between tumor cells and distant tissues. However, accumulating evidence points to the role of mechanobiology in this process. This review proposes a framework in which cellular mechanical memory, the persistent adaptation to physical cues, functions as a mechanical compass that influences metastatic destination. We analyze how cancer cells, conditioned by the physical properties of the primary tumor (such as stiffness and viscosity), are epigenetically programmed to colonize distant organs with compatible mechanical signatures. We examine stiffness matching in bone metastasis, where cells conditioned by fibrotic tumors preferentially home to rigid skeletal niches, mediated by pathways including YAP/TAZ and RUNX2. We then address the paradox of soft tissue metastasis (brain, liver), proposing that a dual mechanical memory enables adaptation to compliant, viscoelastic environments. The role of dynamic forces, including fluid shear stress and cyclic strain, is examined in the context of lung colonization. By synthesizing these findings, we establish a comparative framework in which multidimensional mechanical memory, spanning static stiffness, viscoelasticity, and dynamic forces, contributes to organotropism as a complementary determinant alongside biochemical signaling. This framework generates testable predictions: that pharmacological disruption of specific mechanosensors or epigenetic erasure of stiffness memory should alter organ-specific metastatic patterns in preclinical models. Such a mechanobiological and biomechanical perspective may open therapeutic opportunities aimed at disrupting these physical memories to reduce metastatic dissemination.
    Keywords:  Cancer; Mechanical memory; Mechanobiology; Metastasis; Organotropism; Stiffness matching
    DOI:  https://doi.org/10.1007/s10555-026-10375-6
  14. Nat Commun. 2026 07 30. pii: 9256. [Epub ahead of print]17(1):
      In solid tumors, hypoxia is a key driver of metastasis by promoting cellular plasticity and chromosomal instability (CIN). Despite this, the mechanisms by which malignant cells concurrently co-opt these elements of hypoxic adaptation to promote metastasis remains unclear. Here we report that hypoxia promotes metastasis by suppressing the JmjC-containing histone lysine demethylase KDM8. Kdm8 targeting in a Kras;Trp53-driven mouse model of pancreatic ductal adenocarcinoma induces a profound loss of the epithelial morphology and widespread metastatic disease. Mechanistically, Kdm8 suppression in normoxia recapitulates major aspects of the global epigenetic changes, transcriptomic rewiring, and mitotic spindle defects induced by hypoxia. Of note, disruption of Kdm8's demethylase function phenocopies the effects of Kdm8 loss, whereas expression of hypermorphic Kdm8 variants that are resistant to hypoxic suppression reduces metastasis beyond the levels achieved by the wildtype counterpart. Through the suppression of Kdm8 demethylase activity, hypoxia unleashes a potent metastatic program by simultaneously advancing cellular plasticity and CIN.
    DOI:  https://doi.org/10.1038/s41467-026-76143-w
  15. Langmuir. 2026 Aug 25. 42(33): 23980-23991
      Cellular organization is achieved through compartmentalization into membrane-bound organelles and biomolecular condensates, formed by liquid-liquid phase separation of biopolymers. These condensates behave as liquid droplets with interfacial tensions in the μN/m-mN/m range, and interact with lipid membranes by wetting and deforming them. Using the Helfrich Hamiltonian, triangulated interfaces and membranes, and energy minimization, we analyze the wetting-to-wrapping transition of single condensates at initially planar membranes. For a given membrane stiffness, when the ratio of condensate-cytosol interfacial tension to the membrane tension exceeds a critical value, with increasing adhesion strength, the condensates undergo multiple transitions between nonwrapped, shallow-wrapped, deep-wrapped, and complete-wetting states. The deep-wrapped state is characterized by a neck-stabilized morphology that suppresses complete wrapping; a transition to a complete-wetting state occurs at sufficiently high adhesion strength. At high ratios of the membrane tension over the condensate-cytosol interfacial tension, the deep-wrapped state vanishes at a triple point, and the condensates transition directly from shallow-wrapped to complete-wetting with increasing adhesion strength. Furthermore, we quantify membrane-mediated interactions between two partial-wrapped condensates. High membrane tension induces repulsion by reducing the adhered area at short separations, whereas low membrane tension promotes attraction via cooperative wrapping. Upon contact, the condensates fuse into a nearly spherical droplet, reflecting the dominance of interfacial tension over membrane bending. Overall, our results provide a quantitative framework for understanding condensate organization at biological membranes and guiding the design of biomolecular condensates for drug-delivery applications.
    DOI:  https://doi.org/10.1021/acs.langmuir.6c02295
  16. Mol Biol Cell. 2026 Sep 02. mbcE26050231
      Cell volume in a proliferating cell population generally varies over a limited range (∼2-4-fold). Within such populations, organelle content increases with cell volume maintaining a relatively constant organelle density (amount per cell volume). However, cells of different types can differ greatly in cell volume as well as in organelle composition. In such cases, it is often unclear to what degree, if any, the differences in organelle composition are due to the difference in cell volume. In principle, this issue could be resolved by examining situations where a proliferating population of cells of the same cell type exhibit much greater volume variation. Here we characterize how organelle content scales with cell volume in the polymorphic fungus, A. pullulans, whose proliferating cells span a ∼100-fold volume range. We find that mitochondria and ER content increases in proportion to cell volume, while this is not the case for vacuoles and peroxisomes. Thus, organelle composition is affected by cell volume in this system. [Media: see text] [Media: see text] [Media: see text] [Media: see text].
    DOI:  https://doi.org/10.1091/mbc.E26-05-0231
  17. Apoptosis. 2026 Sep 03. pii: 223. [Epub ahead of print]31(9):
      Copper is an essential trace element required for mitochondrial respiration, redox regulation, iron metabolism, and cellular signalling, but excessive or mislocalised copper can be cytotoxic. Cuproptosis is a recently identified form of regulated cell death in which copper binds to lipoylated mitochondrial proteins, promotes their aggregation, destabilises iron-sulfur cluster proteins, and induces mitochondrial proteotoxic stress. Copper therefore has context-dependent roles in cancer. Physiological copper supports tumour metabolism, angiogenesis, extracellular-matrix remodelling, and selected oncogenic signalling pathways, whereas therapeutic copper depletion can inhibit copper-dependent tumour processes. Conversely, copper ionophores and related approaches may increase intracellular copper sufficiently to induce cuproptosis in metabolically susceptible cancer cells. This review describes systemic and intracellular copper homeostasis, including intestinal absorption, intracellular trafficking, mitochondrial copper distribution, storage, and export. Particular attention is given to CTR1/SLC31A1, the functionally distinct copper-transporting ATPases ATP7A and ATP7B, metallothioneins, copper chaperones, and cytochrome c oxidase assembly factors. We also examine how cancer cells reprogramme copper handling to support proliferation, angiogenesis, metastasis, and immune evasion. Finally, we discuss the molecular basis of cuproptosis, including the roles of FDX1, FDXR, LIAS, DLAT, mitochondrial respiration, protein lipoylation, and iron-sulfur cluster destabilisation. Current evidence indicates that cuproptosis susceptibility varies among tumour types and depends on copper handling, mitochondrial metabolic state, and the integrity of the protein-lipoylation machinery. Defining these determinants will be necessary for the development of tumour-selective copper-targeted therapies.
    Keywords:  Cancer treatment; Copper; Copper homeostasis; Cuproptosis; Mitochondrial dysfunction
    DOI:  https://doi.org/10.1007/s10495-026-02432-w
  18. Front Cell Dev Biol. 2026 ;14 1876023
       Background: Pancreatic ductal adenocarcinoma (PDAC) is one of the deadliest malignancies, characterized by early metastasis, profound therapy resistance, and the highest prevalence of perineural invasion (PNI) among solid tumors. PNI fosters neuropathic pain and recurrence, ultimately correlating with poor survival. Sensory neurons promote PNI via neuropeptidergic signaling, including substance P (SP), while Schwann cells undergo injury-like reprogramming (GFAP+/p75NTRhigh), facilitating tumor invasion through chemoattractant secretion. Although the activation of neurokinin-1 receptor (NK-1R) via SP is implicated in tumor invasion and pain signaling, its role in coordinating bidirectional crosstalk within the PDAC neural niche remains elusive. In this study, we investigated the SP/NK-1R axis as a mediator of bidirectional crosstalk between tumor cells, sensory neurons, and Schwann cells in pancreatic cancer.
    Methods: To elucidate the role of the SP/NK-1R axis in perineural invasion, we employed a series of complementary in vitro approaches. First, NK-1R expression was assessed by immunofluorescence in both primary PDAC tissue slices and PDAC tumor cell lines. To model the tumor-neural niche, MiaPaCa-2 cells were exposed to conditioned medium derived from iPSC-derived sensory neurons and primary human Schwann cells. Furthermore, to investigate the functional consequences of this signaling axis, we established a co-culture system composed of MiaPaCa-2 cells and Schwann cells, in which the number of invaded MiaPaCa-2 cells was quantified. Axon-guided tumor invasion was further examined using the OrganoPlate® Graft platform, where MiaPaCa-2 spheroids were co-cultured with sensory neurons. Moreover, NK-1R was pharmacologically inhibited using the FDA-approved antagonist aprepitant, and its effect on MiaPaCa-2 cell invasion was evaluated in both co-culture settings. Finally, the potential for therapeutic synergy was explored by combining aprepitant with the chemotherapeutic agent paclitaxel to assess potential synergy on cytotoxicity.
    Results: Immunofluorescence analysis of MiaPaCa-2, patient-derived tumor cells and primary PDAC tissue slices, revealed high NK-1R protein expression, establishing NK-1R as a putative clinically relevant target in PDAC. To model the bidirectional crosstalk within the PDAC niche, we examined NK-1R regulation under co-culture conditions. Conditioned media from sensory neurons and primary human Schwann cells significantly upregulated NK-1R expression in the MiaPaCa-2 cells. Reciprocally, exposure of both sensory neurons or Schwann cells to MiaPaCa-2 cells conditioned medium induced NK-1R upregulation, confirming bidirectional signaling. Consistent with this, supernatant from MiaPaCa-2/sensory neuron or MiaPaCa-2/Schwann cells co-cultures demonstrated a substantial increase in SP levels, indicating active neuropeptidergic communication within the tumor-neural niche. To assess the functional consequences of this crosstalk on tumor invasiveness, we employed our co-culture invasion models. Schwann cells significantly increased the number of invaded MiaPaCa-2 cells in co-culture. Furthermore, using the OrganoPlate® Graft platform, co-culture of MiaPaCa-2 spheroids and iPSC-derived sensory neurons demonstrated pronounced axon-guided tumor, validating the human 3D PNI model. Finally, to evaluate the therapeutic potential of NK-1R inhibition, we treated co-cultures with the FDA-approved NK-1R antagonist aprepitant. Pharmacological NK-1R blockade significantly reduced MiaPaCa-2 cell invasion in both sensory neuron and Schwann cell co-cultures. Moreover, combining aprepitant with paclitaxel synergistically enhanced cytotoxicity, revealing a dual role for NK-1R in driving both invasion and chemoresistance.
    Conclusion: Collectively, our findings confirm and extend previous work by implicating SP/NK-1R axis as a potential driver of perineural invasion in PDAC. By leveraging a human 3D microfluidic co-culture PNI model, we provide evidence that NK-1R signaling contributes to sustaining bidirectional tumor-neural crosstalk and promoting invasive progression. Critically, pharmacological inhibition of NK-1R using the FDA-approved antagonist aprepitant not only suppressed perineural invasion but also synergistically enhanced paclitaxel-induced cytotoxicity, highlighting dual vulnerability in both neural invasion and chemoresistance. Together, these findings position SP/NK-1R as a target, offering a novel and translationally relevant strategy to simultaneously disrupt tumor-nerve interactions and improve chemotherapy response in PDAC.
    Keywords:  aprepitant; neurokinin-1 receptor; pancreatic cancer; perineural invasion; schwann cells; sensory neurons; substance P; tumor-neural niche
    DOI:  https://doi.org/10.3389/fcell.2026.1876023
  19. Cancer Lett. 2026 Aug 29. pii: S0304-3835(26)00568-9. [Epub ahead of print] 218804
      KRASG12D-selective and pan-RAS inhibitors have shown promise in pancreatic ductal adenocarcinoma (PDAC), yet adaptive resistance is anticipated to limit durability of response. Exportin 1 (XPO1), a nuclear export protein frequently overexpressed in PDAC, represents a potential vulnerability in KRAS-mutant cancers. We evaluated whether pharmacologic inhibition of XPO1 enhances therapeutic efficacy and durability of KRAS pathway inhibition. KRASG12D inhibitor- and pan-RAS inhibitor-resistant PDAC cellular models were generated and assessed for sensitivity to the second-generation XPO1 inhibitor Eltanexor. Antiproliferative synergistic effects of Eltanexor combined with MRTX1133, Zoldonrasib (RMC9805), or Daraxonrasib (RMC6236) were evaluated in PDAC 2D cultures, 3D spheroids, patient-derived organoids, and tumor-fibroblast co-culture models. Eltanexor sensitized KRAS inhibitor-resistant PDAC cells and synergistically enhanced growth suppression across multiple KRASG12D-mutant models. Combination treatment reduced clonogenic survival, disrupted 3D spheroid integrity, and significantly inhibited viability of patient-derived organoids. The in vivo efficacy of the combination was tested in PDAC cell-derived xenograft/allograft and patient-derived xenograft models. Combining sub-therapeutic doses of Eltanexor with allele-specific inhibitors or pan-RASi resulted in significant tumor regression, prevention of metastatic spread and prolonged survival in vivo. Notably, Eltanexor maintenance therapy suppressed tumor regrowth following RAS inhibitor withdrawal and preserved responsiveness upon re-challenge. Mechanistically, molecular and phosphokinome profiling showed that the combination broadened suppression of MAPK- and mTOR-associated signaling and reduced activity of multiple oncogenic kinases. In conclusion, XPO1 inhibitor Eltanexor enhances the efficacy and durability of KRAS and pan-RAS inhibition in PDAC models. These findings provide a preclinical rationale for clinically evaluating Eltanexor in combination with RAS-targeted therapies to delay or overcome adaptive resistance in KRAS-mutant PDAC.
    Keywords:  Eltanexor; KRAS inhibitors; MRTX1133; RMC6236; XPO1 inhibitor; combination therapy; pancreatic ductal adenocarcinoma
    DOI:  https://doi.org/10.1016/j.canlet.2026.218804
  20. Proc Natl Acad Sci U S A. 2026 Sep 08. 123(36): e2614664123
      Oncogenic KRAS mutations exhibit a striking tissue-restricted tropism, occurring with high frequency in pancreatic, colorectal, and lung adenocarcinomas while remaining rare in other lineages. The molecular basis for why these specific tissues are uniquely permissive to KRAS transformation, and how this context shapes therapeutic vulnerabilities, remains poorly defined. Here, we utilized CRISPR-mediated genome engineering to generate endogenous, conditional KRAS-mutant isogenic cell line models across three primary permissive lineages (lung, colon, and pancreas) and the nonpermissive breast lineage. Integrated genome-wide CRISPR fitness screens and comparative transcriptome analyses revealed that KRAS-driven synthetic lethal (SL) dependencies are profoundly shaped by their tissue of origin. Strikingly, we observed minimal overlap in SL hits across lineages, with only three genes shared among the permissive lines, suggesting that the KRAS oncogene operates through divergent, context-specific genetic networks. Mechanistically, we show that KRAS activation induces a universal MYC-driven metabolic signature, but the specific machinery required to sustain this state is lineage-restricted. We identified a dependency on the diphthamide synthesis pathway to maintain translational fidelity amid a KRAS-induced hypertranslational state. These findings demonstrate that even when driven by the same oncogene, tumors exhibit distinct regulatory landscapes and unique genetic vulnerabilities. Our results provide a framework for developing lineage-aware therapeutic strategies, moving beyond universal KRAS inhibition toward targeted interventions tailored to a tumor's specific tissue context.
    Keywords:  KRAS; cancer; synthetic lethality; tissue specificity
    DOI:  https://doi.org/10.1073/pnas.2614664123
  21. ACS Chem Biol. 2026 Aug 26.
      Mitochondria serve as central hubs of cellular bioenergetics and signaling, yet the dynamic role of their lipid composition in cellular adaptation remains underappreciated. Unlike most organelles, mitochondria possess a unique dual-bilayer membrane architecture shaped by lipid transport and de novo synthesis. The mitochondrial lipidome, dominated by phosphatidylcholine, phosphatidylethanolamine, and the signature phospholipid cardiolipin, influences cristae organization, oxidative phosphorylation capacity, and metabolite transport, collectively determining whether mitochondria undergo stabilization, remodeling, or degradation. In this review, we explore how mitochondrial lipid dynamics sustain organelle-wide homeostasis while coordinating cellular adaptation across multiple temporal scales and how failure of lipid homeostasis drives rare monogenic disorders and complex pathologies. We propose that environmental shifts transiently disrupt the balance between phospholipid biosynthesis and utilization, generating changes in mitochondrial lipid homeostasis that promote cellular adaptation through complementary biophysical and biochemical signaling mechanisms. Specifically, membrane lipid remodeling rapidly alters membrane biophysical properties to regulate membrane protein activity, whereas bioactive phospholipid intermediates and side-products support long-term adaptive reprogramming. Mitochondrial lipids therefore function not merely as passive structural components but as active regulatory nodes that drive cellular plasticity, positioning lipid dynamics at the nexus of metabolic adaptation and human disease.
    DOI:  https://doi.org/10.1021/acschembio.6c00615
  22. Nat Cancer. 2026 Aug 31.
      Exogenous L-glutamine has preclinical antitumor activity although formal clinical translation has not been attempted. We conducted a single-arm phase 1 trial to assess the safety and preliminary efficacy of clinical-grade, US Food and Drug Administration-approved L-glutamine therapy with gemcitabine and nab-paclitaxel (GA) in participants with treatment-naive, advanced pancreatic cancer (n = 16). The primary endpoint was to determine the recommended phase 2 dose (RP2D) by adaptive Bayesian design across standard doses of GA and a dose range of 0.1-0.3 g kg-1 twice-daily oral L-glutamine. Secondary endpoints included safety and preliminary efficacy of the study combination. The primary endpoint was met with the RP2D reached at maximum doses of L-glutamine and GA. The grade ≥3 treatment-related adverse event rate was 66.7%, primarily from GA. Addition of L-glutamine to GA induced tumor shrinkage in 94% of subjects with a best overall response rate (ORR) of 44% (12.5% complete response). Median progression-free survival and overall survival (OS) were 8.5 months (95% confidence interval (CI) 6-not reached (NR)) and 22 months (95% CI 11-NR), respectively. L-Glutamine induced distinct metagenomic and metabolomic signatures on exploratory analyses in glutamine-treated subjects as a single agent, while the combination of L-glutamine and GA nearly doubled the ORR and tripled the OS compared to historical GA alone (ClinicalTrials.gov registration: NCT04634539 ).
    DOI:  https://doi.org/10.1038/s43018-026-01225-z
  23. Sci Adv. 2026 Sep 04. 12(36): eaed6844
      Altered metabolism enables adaptive advantages for cancer cells, driving the need for improved methods for noninvasive long-term monitoring of cellular metabolism. Here, we present a fast live-cell NADH imaging method that provides a real-time measurement of the fractional level of unbound NADH and show that it is a robust indicator of a cell's metabolic status. The method, two-photon fluorescence polarization ratiometric microscopy (FPRM), is easy and inexpensive to implement and more than an order of magnitude faster than fluorescence lifetime imaging microscopy (FLIM), a common means of assessing bound and unbound NADH levels. We show that FPRM returns instrument-independent ratiometric parameters that correlate with the expected metabolic changes arising from pharmaceutical and environmental perturbations. By correlating FPRM-returned parameters with cell morphology and migration in two- and three-dimensional collagen matrices, we demonstrate the technique's versatility in typical bioengineered platforms used in cancer metabolism research.
    DOI:  https://doi.org/10.1126/sciadv.aed6844
  24. Science. 2026 Sep 03. 393(6815): eaec6116
      Chemotherapy-induced peripheral neuropathy (CIPN) is a disabling, often irreversible toxicity that affects millions of patients, limits life-saving cancer therapy, and lacks proven treatment. In this work, we show that as little as two doses of psilocybin before chemotherapy durably prevented the onset of CIPN across platinum- and taxane-based models, including repeated chemotherapy cycles, without impairing antitumor efficacy. Peripherally, psilocybin maintained tactile sensitivity and intraepidermal nerve fiber endings through axonal mitochondrial trafficking and distribution preservation, through the TrkB-Akt-PAK5-MAP2-KIF5B pathway and remobilization of syntaphilin-anchored mitochondria. Centrally, it normalized medial prefrontal cortical synaptic activity and cortical alpha and beta electroencephalography power. This stabilization of peripheral axonal energy balance establishes psilocybin as a first-in-class prophylactic agent for CIPN while also preserving central neural function. Given psilocybin's established safety, these discoveries support clinical evaluation as a strategy to prevent CIPN.
    DOI:  https://doi.org/10.1126/science.aec6116
  25. Cell Chem Biol. 2026 Aug 31. pii: S2451-9456(26)00292-8. [Epub ahead of print]
      Reactive cysteines serve important functions in proteins, and characterizing their engagement by different electrophiles facilitates biological discovery and covalent drug development. Here, we show that the common lysis buffer components phenylmethylsulfonyl fluoride (PMSF) and orthovanadate generate a lysis-derived oxidant that engages cysteines during cell lysis. This oxidant sulfonylates N-acetyl-D-glucosamine kinase (NAGK) C217, producing a mobility shift on SDS-PAGE. C217 lies within the ATP-binding pocket, and a C217S mutant exhibits reduced ATP affinity and enzymatic activity. Competitive iodoacetamide-alkyne activity-based protein profiling (IAA-ABPP) chemoproteomics further showed that the PMSF/orthovanadate oxidant defines a cysteine-engagement profile that partially differs from that of pervanadate. These findings reveal an unrecognized source of chemical reactivity during protein extraction that expands the toolkit for cysteine-engagement profiling and underscores how sample preparation chemistry shapes chemoproteomic measurements.
    Keywords:  N-acetyl-D-glucosamine kinase; NAGK; PMSF; cysteine oxidation; cysteine reactivity; orthovanadate; phenylmethylsulfonyl fluoride
    DOI:  https://doi.org/10.1016/j.chembiol.2026.08.005
  26. STAR Protoc. 2026 Sep 02. pii: S2666-1667(26)00467-3. [Epub ahead of print]7(3): 104814
      Budding yeast is a model organism to study evolutionarily conserved biological processes, including plasma membrane (PM) repair. Here, we present a protocol to induce localized PM and cell wall damage during live-cell imaging. We describe steps for revival from frozen stock, liquid culture, inducing laser damage, and live-cell imaging. We then detail procedures for fluorescence-signal quantification and statistical analysis. This protocol enables the study of localized PM and cell wall repair mechanisms in budding yeast.
    Keywords:  Cell Biology; Cell Membrane; Microbiology; Microscopy; Single Cell
    DOI:  https://doi.org/10.1016/j.xpro.2026.104814
  27. Nat Methods. 2026 Sep;23(9): 1724-1733
      A transparent evaluation and proof of reproducibility, generalization and replicability of algorithms are the bedrock of method development in computational biology. Many benchmarking efforts have been developed for problems ranging from structural biology to translational biomedicine. Rigor is relatively controllable for tasks such as the prediction of patient outcomes or the outcomes of biological assays, but the problem is exacerbated when the aim is to benchmark foundation models. The parameters constituting them are supposed to capture the patterns underlying the data; therefore, the models are parameterized embodiments of the phenomena that gave rise to the data. How can we test the limitations of these models? Here, we discuss the epistemological value of foundation models; whether they can be refuted, verified or evaluated primarily on the basis of utility; what principles should guide their benchmarking; and what role the scientific community should play in that benchmarking process.
    DOI:  https://doi.org/10.1038/s41592-026-03182-y
  28. Methods Mol Biol. 2026 ;3063 205-225
      The Lipid Data Analyzer (LDA) is a platform-independent software tool for the automated identification and quantification of lipid species and other metabolites in both untargeted and targeted mass spectrometry (MS) data. LDA mirrors the decision-making process of trained MS experts, enabling automated, high-throughput analyses across any instrumental setup through customizable, rule-based logic. These decision rule sets represent chemical and structural logic, yielding annotation results of high reliability. Furthermore, decision rules can be easily extended to accommodate new lipid classes, adduct forms, or fragmentation mechanisms. This makes LDA particularly effective for identifying novel lipid species or structural isomers that are often missed by traditional approaches, and enables users without a bioinformatics background to easily adapt to evolving analytical protocols. Moreover, LDA supports the identification of double bond positions and other modifications, such as oxidations. Here, we present a step-by-step guide and practical tips for efficient operation of LDA, and provide an introductory discussion of common pitfalls in lipidomics data analysis.
    Keywords:  Chromatography; LDA; Lipid identification; Lipidomics; Mass spectrometry; Metabolomics; Oxidized lipids; Untargeted; double bond localization
    DOI:  https://doi.org/10.1007/978-1-0716-5452-1_12
  29. Trends Cell Biol. 2026 Sep 04. pii: S0962-8924(26)00168-6. [Epub ahead of print]
      The field of horizontal mitochondrial transfer (HMT), also referred to as intercellular mitochondrial transfer, has recently gained momentum due to an increasing number of publications that go well beyond diseases such as cancer. From co-culture experiments to in vivo evidence in mouse cancer models, noncancerous diseases, and normal tissue and organ homeostasis and development, it is becoming increasingly clear that HMT is a fundamental physiological phenomenon broadly relevant to complex organisms. Recent methodological advances, epitomized by ultra-high-resolution microscopy and spatial and single-cell multiomics technologies, allow for research that strongly supports HMT as an emerging area of cell biology.
    DOI:  https://doi.org/10.1016/j.tcb.2026.08.012
  30. Methods Mol Biol. 2026 ;3063 227-242
      The epilipidome, a subset of the natural lipidome arising from enzymatic and non-enzymatic lipid modifications, remains largely unexplored. Within this emerging class, oxidized complex lipids have raised considerable interest due to their diverse biological functions, including the modulation of inflammation, cell fate decisions, and the execution of programmed cell death. However, the discovery and annotation of these typically low-abundant yet structurally diverse lipid species present significant analytical challenges, often necessitating advanced bioinformatics tools. Here, we present a computational pipeline powered by LPPtiger2 software, designed for the comprehensive discovery, detection, and annotation of complex oxidized lipids within the context of a defined lipidome. The LPPtiger2 hybrid workflow offers a robust solution for high-quality epilipid profiling by integrating a predictive algorithm with a semi-targeted experimental protocol. Using a knowledge-based in silico epilipidome prediction algorithm, it generates a highly customized, sample-specific search space prior to data acquisition. This approach transforms the conventional untargeted lipidomics pipeline into a semi-targeted workflow that selectively focuses on predicted epilipid precursors. Such specificity enhances LPPtiger2-supported annotation of modified epilipids through improved sensitivity, superior MS/MS spectral quality, and a tailored lipid search space.
    Keywords:  Epilipidomics; Lipid annotations; Lipidomics; Oxidized lipids; Software
    DOI:  https://doi.org/10.1007/978-1-0716-5452-1_13
  31. Aging Dis. 2026 Aug 25.
      Cellular senescence is an irreversible growth arrest state and a hallmark of organismal aging. While induction of cellular senescence in healthy organs is undesirable, senescence of specific cell types can be beneficial in certain pathological milieus. For instance, the senescence of activated myofibroblasts helps to limit excessive collagen deposition and preserving tissue homeostasis. Senescent cells express signature gene products, including cell cycle regulators and senescence-associated secretory phenotype (SASP), which includes proinflammatory cytokines, growth factors, and protease inhibitors. Among the senescence regulators, the tumor suppressor p53 plays a pivotal role in suppression of fibrogenesis by dual action: through transcriptional repression of matrix protein genes, and through activation of the cellular senescence pathway in matrix-producing myofibroblasts. Because p53 activation suppresses collagen synthesis, it offers a promising treatment for most fibrotic diseases. However, sustained activation of p53 stress-response in healthy cells may accelerate cellular senescence and aging by promoting the release of SASP. Therefore, the magnitude and timing of p53 activation are critical factors that determine whether its effects are beneficial or detrimental in a given pathological milieu. Here, we discuss the fascinating dual trajectory of p53: its role in driving cellular senescence that contributes to aging, and its capacity to limit the progression of fibrogenesis, a major driver of age-related morbidity and mortality worldwide.
    DOI:  https://doi.org/10.14336/AD.2026.0543
  32. Proc Natl Acad Sci U S A. 2026 Sep 08. 123(36): e2617638123
      Aster proteins (Aster-A, -B, and -C) are crucial for transporting cholesterol from the plasma membrane (PM) to the endoplasmic reticulum (ER). Asters are expressed in a cell type-specific manner across tissues. Their global disruption leads to varied physiological outcomes given the diverse roles of cholesterol throughout the body. We previously identified sterol analogs, such AI-3d, that inhibit all three Aster proteins. However, their utility is limited by toxicity and off-target effects. Here, we report the development of nonsteroidal Aster inhibitors that are active in cells and in vivo, using binding-guided design to generate compounds with isoform-selective affinities. We found that YKJ-124 is a low-toxicity, Aster-A-preferring inhibitor that elevates PM-accessible cholesterol in primary T cells and potentiates store-operated Ca2+ entry in Th17 cells, phenocopying Aster-A deficiency. YKJ-300 and YKJ-305 selectively target Aster-C; cocrystal structures and point mutation studies reveal a Ser477-dependent hydrogen bond (Gly in Aster-A/B) that underlies this specificity. We also explored the in vivo consequences of pharmacologic Aster-C inhibition. YKJ-305 treatment of mice blunted fasting-induced hepatic cholesterol transport and cholesterol ester formation, accompanied by compensatory activation of the SREBP2 pathway. Last, we also identify broader-spectrum inhibitors (YKJ-86) and dual Aster-A/C inhibitors (YKJ-262) that drive PM cholesterol accumulation in fibroblasts and human intestinal enteroids. Together, these chemical probes enable isoform-resolved manipulation of Aster-dependent cholesterol trafficking and provide a foundation for developing Aster-targeted therapies for cholesterol dysregulation.
    Keywords:  cholesterol; lipid transport; small molecule inhibitors
    DOI:  https://doi.org/10.1073/pnas.2617638123
  33. Sci Adv. 2026 Sep 04. 12(36): eaef8132
      Mitohormesis, whereby transient mitochondrial stress induces adaptive signaling, promotes organismal resilience and longevity in invertebrates, but how this operates in mammals and the underlying metabolic signals involved remain unclear. Using a mouse model of mitohormesis, we show that transient mitochondrial superoxide stress during embryogenesis reprograms the adult heart to enhance mitochondrial biogenesis and antioxidant capacity. These adaptations confer protection against mitochondrial and oxidative injury in models of doxorubicin-induced cardiotoxicity, preserving mitochondrial content and preventing cardiac dysfunction and remodeling. Using a cell model of superoxide-mediated mitohormesis, we find that inhibition of mitochondrial aconitase promotes citrate export to the cytosol, where its conversion to acetyl-coenzyme A drives histone acetylation and mitohormetic protection from oxidative stress. Preventing mitochondrial citrate export abolishes these adaptations, while Aco2 silencing or citrate supplementation recapitulates the response. Together, our findings identify mitochondrial citrate as a redox-sensitive second messenger linking mitochondrial superoxide stress to durable epigenetic and mitohormetic remodeling.
    DOI:  https://doi.org/10.1126/sciadv.aef8132